Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 4,245,997 | 0 | G | C | 33.3% | 128.2 / 20.2 | 63 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase PlsB |
Reads supporting (aligned to +/- strand): ref base G (11/31); new base C (21/0); total (32/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.28e-09 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
AGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGGCGCGCAACGTCAGCAAATCTGCT > NZ_CP009273/4245748‑4246245 | aGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑g < 1:48939/250‑1 (MQ=255) ccttGACGAGCAGGAAACCGGGGGCCCACGGCGGCCAGACGTTGAGGGGCAAAGTGCATCCGCGCAGGGCGCCCCATTTTCTGGGCGAAAGTTTAATCCTTGCCGTGTTCATCCACCATGCGGCGCAGCGAAGCTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTGCGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑Ggcg < 2:563478/247‑1 (MQ=255) cccTGCCGAGCAGGCAAGCGGGGGCCTAGGGCAGCCAGACGTGAACGGGCAAAGTGCATACGCGCCGCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTGCGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑Ggcg < 2:71786/249‑1 (MQ=255) ccTGACGAGCAGGCAAACGGGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑Ggcgc < 2:782291/250‑1 (MQ=255) cAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CCGCGGCGGGGGTAACTCCCCTTTTT‑TACGCCCC‑Cgccccgcgccca > 2:225024/1‑239 (MQ=255) aaCGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTCAATTCGCCCTTTT‑TTCGCCCC‑CGCGCGCGCCCcaaaaaccc > 2:936084/1‑244 (MQ=255) gCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑TAAGCCCC‑CGCGCGCGACCAAAAATC‑ACCGacacc > 1:959562/1‑249 (MQ=255) gCCTACAGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACt < 1:452442/250‑1 (MQ=255) cAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCAt < 1:415115/250‑1 (MQ=255) cAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTGACATCTCCTTTTT‑TCTCCCCC‑CCCGGCCGACCCCACATC‑ACCCACCCCGGCCCCaccctc > 2:54351/1‑245 (MQ=255) gTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCACCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTAACTTCGCCTTTTT‑CACGCCCC‑CGCGCGCGACCCAACATC‑ACCCACACACGCACCACCCGCA‑CAta > 1:261706/1‑249 (MQ=255) ttGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTACCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATcc < 1:81146/250‑1 (MQ=255) gggCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTTACTTCGCCTTTTT‑TACGCCCC‑CGCGCGCGACCAAACATC‑ACCCACACTGGCACCATCTGCA‑CATCCAGAtt > 1:306508/1‑250 (MQ=255) cAAAGTGCATACGCCCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTgg < 1:861760/250‑1 (MQ=255) aaaGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTCACTTCGCCTTTTT‑TCCGCCCC‑CGCGCGCGGCCCAACATC‑ACCGACACTTGCACCATCTGCA‑CATCCAGAATTtgg > 1:575640/1‑250 (MQ=255) aGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGtt < 1:282011/250‑1 (MQ=255) tGCACACGCCCCACCCGCCCCATTTTCGGAGCTATTGTTTTATCCGGGCCGTGTTCTCCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCAAAAACCTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGc < 2:438168/250‑1 (MQ=255) cATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑TACGCCCC‑GGCGCGCGGCCCAACATC‑CCCGACACCGGCACCCTCTGCA‑CATCCAGAATTTGGTTGCTa > 1:808725/1‑250 (MQ=255) cgcCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTGCCCATTGCCTTTTT‑CCAGCCCC‑CGCCCCCGACCCACAATCAACCACCACGGCCACCCTCTGAC‑CAACCGGA‑TTGGGGTGCTAccggg > 2:66766/1‑245 (MQ=255) cccgcgcCAGTTTCGGCGCGATAATTTTACCCGCGCCGTGTCCACCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATc < 2:448704/248‑1 (MQ=255) gcgcgcCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCGCAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTCACCTCGCCCTTTT‑CACGCCCC‑CGCGCGCGGCCAAACAAC‑ACCCCCCCCGGGCCCATCCTCACCACCAAGATTTGGGTTGCTCGGGTGCaaacg > 2:300384/1‑248 (MQ=255) tcgcCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGCTTCTCTTCTCCTTTTT‑TTCCCCCC‑GCCGCGCGCCCACACAAC‑CCCCACACCGGGCCCACCCGCC‑CCTCCCCCATTGGGTTGCTACGCTGCCAACCgag > 2:601199/2‑250 (MQ=255) gcCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCAATTCGCCCTTTT‑TACGCCCC‑CGCGCCCGACCCAACATC‑CCCCACACCGGCCCCCTCCTCC‑CATCCCGCATTGGGTTGCTCCGGTGCAAATCgagg > 2:291461/1‑248 (MQ=255) aGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTCACTTTGCCTTTTT‑TACGCCCT‑CGCGCGCGACCAAAAACC‑CCCGACACAGGGCCCATCTTCT‑CACCCCAATTTTGGTTGCTTCCGTGCACATAGAGATAGt > 2:696866/1‑250 (MQ=255) tttCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCTCCTTTTT‑TACGCCCC‑CGCGCGCGACCAAACACC‑ACCGACACCGGCCCCCTCTTCC‑CATCCCGATTTTGGTTGCTACGGTGCAAATCGAGGTAGTCg > 1:165930/1‑250 (MQ=255) gCGATATTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAACCGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACa < 1:519418/250‑1 (MQ=255) aTAGTTTTACCCGTCCCTGGTTCACCCGCCATACGGCGCAGCGAAACTGACGGCGAAAAACGCACAAAACTGTCGCGCCCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCt < 2:398299/250‑1 (MQ=255) tAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCtt < 1:494260/250‑1 (MQ=255) gTTTTACCCGGCCCGTGTTCACCCGCCATACGGCGCAGCAAAACTGACGGCGAGAAACGCACAAACCTGTCGCGCCCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCCCTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTa < 2:330643/249‑1 (MQ=255) ccggcccgtgTTCTCCCGCCATACGGCGCAGCAAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGActc < 2:41790/245‑1 (MQ=255) gccgtgTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTCCCTTCGCCTTTTT‑CACGCCCC‑CGCCCGCGGCCAAACATC‑ACCGACCCCGGCCCCCCCTGCA‑CACCCCGCTTTGGGGTTGTACCGGGCAAAACGGTATAAGCGGGGGACAACCTAATATACacttct > 2:24514/1‑250 (MQ=255) gtgttccccccGCCATAGGGCGCAGCAAAACTGACGGGGAGAACCGCACAAAGCTGCCGCGACCGGGCCACAGTACAGCGAAAAATTGCTGTCCGCCGTTAAGCATGCG‑CAGCGGCGGGTTCCCTCCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACGCTTCttt < 2:162065/241‑1 (MQ=255) aTCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCgt < 1:396050/249‑1 (MQ=255) tCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCgtgt < 1:13801/250‑1 (MQ=255) tCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTCACTTCGCCTTTTT‑TACGCCCC‑CGCGCGCGGCCAAAAATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGGTGCTACGGGGCAAATCGAGATAGGCGTGGAACAGCTTAATAGACTCTTCTTTCGGCgtg > 1:366772/1‑249 (MQ=255) gCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTCACTTCGCCTTTTT‑TACGCCCC‑CGCGCGCGCCCAAAAAAC‑ACCCACACCTGGACCCTCTCCC‑CAACCCGGGTTGGGGTGGTTCGGGGCGAAAAGAGATAGTAGTGGAACAGGTTAATATACTCTTCtttttgcggggaa > 2:230224/1‑239 (MQ=255) cGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTg < 1:510343/249‑1 (MQ=255) gCGAAACTGACGGCGAAAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACAcg < 2:250073/250‑1 (MQ=255) cggACGGGGAGAAACGCACAAAACTTTCGCGCCCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGccc < 2:445929/248‑1 (MQ=255) aCGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCGCAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCccg < 1:300384/248‑1 (MQ=255) cGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCAACTCTCCTTTTT‑TACGCCCC‑CGCGCGCCACCCAAAAAC‑ACCGACACTGCCACCCCCTGCC‑CAACCACATTTGGGGTTTTACGGTGCACAAAGAGATAGTTGTGGAACAACGTATTAAACTCCTTTTTCTGCGTGTAATAGGGGAACACAcacgcgcccccg > 2:689108/1‑242 (MQ=255) ggCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTGCCTTTGCCTTTTT‑TACCCCCC‑CGCGCGCGACCCAACACC‑AACCACCCTGGCACCACCTGCC‑CATCCCGATTTGGGGTGGTACCGGGCTAATCCAAATAGTCGGGGACAAGCTTTATAAAACATTCTTTTTGCGCGTACTAGGTGGCCACACCAGGGccgccgc > 2:862855/1‑249 (MQ=255) aaaaCTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGGTCACTTCGCCTTTTT‑TACGCCCC‑CGCGCGCGACCAAACATC‑ACCGACACTGGCACCCTCTGCA‑CATACAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGGACAGCTTAATAAACTCTTCTTTCTGCGGGTAATAGGGGAACACACGCGGCCCGCCGTGAATGAACACATAg > 1:234038/1‑250 (MQ=255) aaaCTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑TACGCCCC‑CGCGCGCGACCCAACATC‑ACCGACACTGGCACCATCTGCC‑CATCCAGATTTTGGGTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAAAACATAgc > 1:256325/1‑250 (MQ=255) cggTCGCGACCGCCCAACAGTACAGCAAAAAATTTCTGTACGCGGTAAAGCATCCG‑CGGCGGCGTGTCCACTTCGCCTTTTC‑CACGCCCG‑GCCGCGCGACAAAACACC‑ACCGACACGGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTAGGGTGAAAAGCGAGATATTGGGGGAACAGCTTAATAGCCTCTTCTTTCGGGGTGTAATAGGTGACCACACGCGGCCCGCCGTGAATGAACACATAGcgcg < 2:814490/248‑1 (MQ=255) tCGCGCCCGAGCCACAGTACAGCAAAAAATTTCTTTACGCCTTAAAGCATCCG‑CAGCGGCGGTTTCCCTCCGCTTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑CCCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCgg < 1:458857/248‑1 (MQ=255) ccgcgCCCGAGCCACAGTACAGCAAAAAATTTCTGTCCGCCGTAAAGCATACG‑CGGCGGC‑GGTTCCCCTCCCCTTTTTCCCCGCCCC‑GGCGCGCGACAAAACATC‑CCCGACACTGGCACCATCTGCA‑CACCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCgg < 1:397429/247‑1 (MQ=255) gccggcgCCACAGTACAGCAAATATTTTCTGCCCGCCGTGAAGCAACCG‑CAGCGGGGTTTTCAC‑TCCCCTTTTT‑CCCCCCCCGGGCGCGCGACAAAACCCC‑CCCGACACGGGCACCTTCTGCA‑CATCCAGTTTGGGGTTGCTACGGTGAAAAGCGGGATAGTCGGGAAACAGTTTAATAGACTCTTCTTTCGGGGTGAAATAGGTGAACACCCGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAg < 2:566085/244‑1 (MQ=255) aaaaaTTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑CGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGGTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAAACTCTTCTTTCGGCGTGTAATAGGTGAACACAAGCGGCCCCCCGTGAAAGAACAACAAACGCGGCAGGAGCGGGCCGTCGATTTTCcgcg > 1:228648/1‑250 (MQ=255) aaaaaTTTCTGCCCCCCTTTAACCA‑ACGCCGGGGGCGGTTTCAC‑TCCCCTTTTT‑CCCCCCCCGGGCGCGCGACAAACCACC‑CCAGACACTGGCCCCATCTGCA‑CATCCAGATTTGGTTTGCTCCGGTGAAAATCGAGATAGTCGGGAAACAGCTTAATAGACTCTTCTTCCGGCGTGTAAGAGTTGACCACCCGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCg < 2:903078/250‑1 (MQ=255) aTTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑TACGCCCC‑CGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCCCCGGGAATGAACACATAGCGCGGCAGTAGCGGGCCGTCGATTTCCAGCGGctc > 1:290441/1‑250 (MQ=255) tccG‑CAGCGGCGGGTTCCCTCCGCCTTTTT‑CCCCCCCC‑GGCGCGCGACCAAACATC‑CCCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCAtg < 1:936084/248‑1 (MQ=255) cG‑CAGCGGGGGTTTCACTTCCCTTTTTC‑CACGCCCC‑GGCGCGCGACAAAACATC‑CCCGACACGGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACCCGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCAtgtg < 1:317256/250‑1 (MQ=255) aggggcggTTTCCCTCCGCCTTTTT‑CCCCCCCG‑GGCGCGCGACAAAACACC‑CCCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGAAAATCGAGATAGTCGTGAAACAGCTTAATAGCCTCTTCTTTCGGCGTGTAATAGGTAAACACCCGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCa < 1:773540/247‑1 (MQ=255) gcggGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGaca > 1:363310/1‑250 (MQ=255) gTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTgg > 1:848401/1‑250 (MQ=255) tCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGgc > 1:44470/1‑250 (MQ=255) cccTTCCCCTTTTC‑CCCGCCCC‑GGCGCGCACCAAAACCAC‑CCCGCCGCGGGCACCTTCTGCT‑CAGCCAGATTTGGGTTGCGAGGGTGCAAACGGAGATAGTCGGGGAACAGCTTAATAGACTCTTCTTTCGGGGTGTAAGGGGTGACCACCCGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGgcg < 2:614530/248‑1 (MQ=255) gCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGGCGCGCAAc > 2:484717/1‑250 (MQ=255) cTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGGCGCGCAACGt > 1:606052/1‑250 (MQ=255) tt‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGGCGCGCAACGTCAg > 1:750590/1‑249 (MQ=255) t‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCAtg > 1:960076/1‑221 (MQ=255) ccc‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGGCGCGCAACGTCAGCAAATCTg > 1:395/1‑250 (MQ=255) c‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGGCGCGCAACGTCAGCAAATCTGCt > 1:82971/1‑250 (MQ=255) | AGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACG‑CAGCGGCGGGTTCACTTCGCCTTTTT‑CACGCCCC‑GGCGCGCGACCAAACATC‑ACCGACACTGGCACCATCTGCA‑CATCCAGATTTGGGTTGCTACGGTGCAAATCGAGATAGTCGTGGAACAGCTTAATAGACTCTTCTTTCGGCGTGTAATAGGTGAACACACGCGGCCCGCCGTGAATGAACACATAGCGCGGCAGTAGCGTGCCGTCGATTTCCAGCGGCTCTAACGGGTCAGGCAAGTCATGTGCCAGACACTGGGCGCGCAACGTCAGCAAATCTGCT > NZ_CP009273/4245748‑4246245 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |