| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,257,298 | 0 | T | G | 32.4% | 148.3 / 11.4 | 69 | T12P (ACC→CCC) | prs | ribose‑phosphate diphosphokinase |
| Reads supporting (aligned to +/- strand): ref base T (7/39); new base G (22/0); total (30/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.89e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATAGCCAAAGTAGGGGATAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAGCCATTGAGCCAT > NZ_CP009273/1257049‑1257545 | cATAGCCAAAGTAGGGGATAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGt > 1:606477/1‑250 (MQ=255) aaaGTAGGGGATAACAGCGGTGAGACGACCTGCGGAAGCACGACGCAGTGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTa < 2:765201/250‑1 (MQ=255) aaGTAGGGGATAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGGGTTAc > 1:247050/1‑250 (MQ=255) gTAGGGGATAACAGCGGTGATACGACCTGCGGAAGCACCACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCa < 2:159620/250‑1 (MQ=255) ggTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCata < 2:897100/250‑1 (MQ=255) tGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATc < 2:850557/250‑1 (MQ=255) gCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTTGCGATA‑CCTTGTGCTTGTTCCTGGGGGGCGTCACCGAC‑AAACAGCTTCctattatgcccggggg > 2:726451/1‑238 (MQ=255) cGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGagaag < 2:645927/250‑1 (MQ=255) ggAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGagaaga < 1:560130/250‑1 (MQ=255) ggAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGGTACCAGC‑AAAAAACTTCATATCAGGCACGagaag > 1:608857/1‑249 (MQ=255) gAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGGTGGCAAAA‑CGTTTTGCTAGATCCGGGGTGGGGCTACCAGCAAAAAAGCTTTA‑ATCAGGCCCGagaaaa > 2:722564/1‑247 (MQ=255) gAAGCACGACGCAGGGCATCAACCATAACGACGAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAgaagaa < 2:910266/250‑1 (MQ=255) acgacgCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCa < 2:385894/250‑1 (MQ=255) acgacgCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCa < 1:93024/250‑1 (MQ=255) acgCAGGCCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCCATACCGTTG‑GCTAGTTTCGGGGCGGCCGGAGCAGG‑CAAAAGCCTTATATCAGGAACCAGAAGAACCTccgc > 2:185299/1‑246 (MQ=255) cAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATg < 1:280595/250‑1 (MQ=255) ggCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAAAA‑CGTTGTGCTAGTTCCCGGGGGGCGGTACCAGC‑AAAAAGATTCATATCAGGGGCGAGAAGAAACTCAGGCATGCgg > 1:522746/1‑249 (MQ=255) gCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTc < 2:55931/250‑1 (MQ=255) tCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCAt < 2:450144/250‑1 (MQ=255) aaCCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATtg < 1:497791/250‑1 (MQ=255) cATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACGGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATtggtg < 1:737633/250‑1 (MQ=255) aTAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGGGGTACCAGC‑AAAAAGCTTCATATCAGGCACGAGGAGAAACTCAGGCATGCGTCCATtggtgg > 1:504489/1‑250 (MQ=255) aTAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTccccttgtgg > 1:542255/1‑242 (MQ=255) aaCGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGGGTTACCCGC‑AAAAAACTTCATATCAGGGCCGAGAAGAACCTCCGGCATGCGTCCATtggtggg > 2:840499/1‑248 (MQ=255) gACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGGAATA‑CGTTGTGGTTGTTCCGGGGGGGGGGTTCCCGC‑AAAAAGACTCATATCAGGGACGAGAAGGAACTCAGGCATGCGGCCACtgtggggaag > 2:484790/1‑241 (MQ=255) aCTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGaa < 1:768059/250‑1 (MQ=255) cAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTTCGGGGGGGGGGTACCAGC‑AAAAAGCTTCATATCAGGGACGAGAAAAACCTCAGGGATGCGGCCATTTGTGGAAAGAATTTGCCGaaa > 1:487442/1‑249 (MQ=255) ttGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACtgt > 1:856085/1‑250 (MQ=255) tGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGCGGTACCAGC‑AAAAAGCTTCATATCAAGCACGAGAAGAACCTCAAGCAAGCGTCCATTGGTGGAAAGAAACTGCCGAAAACtgtg > 1:451343/1‑250 (MQ=255) tagtagGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGGGTTACCAGC‑AAAAAGCTTTATATCAAGCACGAGAAGAAACCCAGGCATGCGTCCCTTGGTGGAAAGAAACTGCCGAAAAATGTGCGGGcc > 1:191173/1‑250 (MQ=255) tagtagGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGGTCCGGGGGGGCGGTTCCCGC‑AAAAAACTTCATATCAGGCACGAGAAGAAACTCAGGCATGCGGCCATTGGGGGGAAGAATCTGCCGAAAAATGTGCGGGcc > 1:238114/1‑250 (MQ=255) tagGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGCGTTTCCAGC‑AAAAAGATTCATATCAGGCACGAGAAGAACCTCCGGCATGAGTCCATTGGTGGGAAGAATACGCCGAAAACTGTGGGGGCCggg > 2:343046/1‑250 (MQ=255) ggggCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCa < 1:36275/250‑1 (MQ=255) aaGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCCATA‑CGTTGTGCTAGTTCCCGGGGGGGGGTTCCCGC‑AAAAAACTTCATTTCAGGCACAGGAAGAAACTCCGGCATGCGTCCATTGGTGGGAAGAATCTGCCGGAAAATGTGCGGGCCGGGCATGATccc > 2:454295/1‑249 (MQ=255) gACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTcc < 2:370298/249‑1 (MQ=255) gatgatGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGc < 1:768562/248‑1 (MQ=255) tgatgaAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGgtg < 2:947585/250‑1 (MQ=255) aaaaTATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAAAA‑CGTTGTGCTAGTTCCGGGGGGGGGTTACCAGC‑AAAAAACTTCATATCAGGCACGAGGAGAAACTCAGGCATGCGTCCATTGGTGGAAAAAATCTGCCGAAAACTGTGCGGGCCCGGCCTTATCCTTTCCCGGCGGTGGAtt > 2:934595/1‑249 (MQ=255) caccacCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAgcg < 2:924250/250‑1 (MQ=255) caccacCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAgcg < 2:98269/250‑1 (MQ=255) gcgTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGGGGTACCAGC‑AAAAAACTTCCTATCAGGGACCAGAAAAACCTCAGGCAGGCGTCCATTGGTGGAAAGAAACTGCCGAAAACTCTGCGGGCCAGGCCAGTACCTTTCCAAGGGGGGGTTTATAAAGCGCGAGGc > 2:915187/1‑249 (MQ=255) gtgcATTTTCATTAATTGGTCCGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCAGTTGGCAATA‑CGTTGTGCTAGTTCCTGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAGCCTCAGGCAGGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGTCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCa < 2:252351/245‑1 (MQ=255) aCATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTTGCAATA‑AGTTGTGCTAGTTCCGGGGGGGGGGTACCAGC‑AAAAAACTTCCAATCAAGCACGAGAAAAAACTCCGGCATGCGTCCCTTGGTGGGAAGAATATGCCGAAAACTGTGCGGGCCAGGCATGGTACTTTCCCGGCGGGGTATTAACAAGCGAGATGCAACg > 2:866238/1‑249 (MQ=255) cATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTc < 1:683440/250‑1 (MQ=255) cATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTc < 1:484790/250‑1 (MQ=255) aTTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGGTGTGCTAGTTCCGGGGGGGGGGTTACAGC‑AAAAAACTTCATATCAGGCACGAGAAGAAACTCAGGCATGGGGCCATTTGTGGAAAGAATCTGCCGAAAACTTTGGGGGGCGGGCATGAACCTTTCCAGGCGGTGTAGTAAAGAACGCCATgacacggct > 2:704407/1‑242 (MQ=255) ttCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTgg < 1:954561/249‑1 (MQ=255) tttGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTg < 2:854879/250‑1 (MQ=255) cTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGGGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAAACTCAGGCATGCGTCCATTGGGGGGAAGAATCTGCCGAAAAATGTGCGGGCCCGGCATGATCCTTTTCCGGCGGGGGGTTTAAAAGCGCGGTGGAACCTCTGGGACAAAGGGAAGTTGt > 2:158337/1‑249 (MQ=255) gACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGATTGCAATA‑CGTTGTGCTAGTTTCGGGGGGGCGGTAACAGC‑AAAAAGCTTCATATCAGGGACGAGAAGAAACTCAGGCATGCGTCCATTGGCGGAAAGAATCTGCCCAAAACATTGCGGGCCAGGCAGGAACCTTTCCCGGCGGGGTCATAAAGAGCGACGGACAACGCCTGGTACAACGTGGCGtgtttcc > 2:836017/1‑244 (MQ=255) gACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGGTGTGCTAGTTCCGGGGGGGCGTTACCCGC‑AAAAAACTTCATATCCGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGGAAGAAACTGCCGAAAACTGTGCGGGCCCGGCATGATCCTTTCCAGGCGGGGGATTAAAAAGCGCGATGCAACGACTGGAACAAGGGGGAGTTGTCCCCGCAAATCCGCTTGGCCCGc > 2:43688/1‑250 (MQ=255) ccTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGGAAGAAACTGCCGAAAACTGTGCGGGGCAGGCATGATCCTTTCCAGGCGGTGTATTAAAAAGCGCGATGCAACGTCTGGAAAAAGGGGACGTTGTCACCGAAACTCAGCTTGCCCGGCt > 1:502026/1‑249 (MQ=255) ccTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCtt < 1:402106/250‑1 (MQ=255) cAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTaaa < 1:320692/249‑1 (MQ=255) cgTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGc < 2:895975/250‑1 (MQ=255) cGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCtgtg < 2:207135/250‑1 (MQ=255) gAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGc < 1:669230/250‑1 (MQ=255) gtgtACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATgggg < 1:343046/250‑1 (MQ=255) gtgtACAGGCGGTTGGCAAAA‑CGTTGTGCTAGTTCCGGGGGGGCGGTACCAGC‑AAAAAGATTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGGGGGAAGAATCTGCCGAAAAATGTGCGGGCCAGGCCTGATCCTTTTCCGGCGGGGGATTTAAAAGGGCGATGCAACGTCTGGGAAAAGGTGACGGTGTCACCGGAACACAGCTTGCCCGGCCTAAAGAACGGGCCtgtggcaagggg > 2:453266/1‑242 (MQ=255) gtACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGaa < 2:214622/250‑1 (MQ=255) cGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAg < 1:810164/250‑1 (MQ=255) gTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAgcg > 2:858380/1‑250 (MQ=255) gCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCt < 2:869480/249‑1 (MQ=255) tgCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGGACGGGAAGAACCTCAGGCATGCTTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGGCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAg < 2:330644/250‑1 (MQ=255) tCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAGCCAtt > 2:949280/1‑248 (MQ=255) cGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGGGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAGCCATTGAGc > 2:452396/1‑250 (MQ=255) ggggTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAGCCATTGAGcc < 1:359572/250‑1 (MQ=255) gggTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAGCCATTGAGCCa > 2:723274/1‑250 (MQ=255) gggTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAGCCATTGAGCCa < 1:158337/250‑1 (MQ=255) ggTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAGCCATTGAGCCAt < 2:297322/250‑1 (MQ=255) | CATAGCCAAAGTAGGGGATAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATA‑CGTTGTGCTAGTTCCGGGGTGGCGTTACCAGC‑AAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCGATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCACAAAGCCATTGAGCCAT > NZ_CP009273/1257049‑1257545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |