| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,555,035 | 0 | T | C | 32.6% | 82.6 / 10.8 | 46 | E51G (GAA→GGA) | ddpB | ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (26/5); new base C (0/15); total (26/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.03e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCAGATGATCCAGCCAGCGATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTT > NZ_CP009273/1554787‑1555281 | ccAGATGATCCAGCCAGCGATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTc < 2:34578/250‑1 (MQ=255) gatgatCCAGCCAGCGATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAc < 1:877876/250‑1 (MQ=255) gatCCAGCCAGCGATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAA‑Ga > 1:182243/1‑249 (MQ=255) gtCCAGCCAGCGATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑t < 2:621099/248‑1 (MQ=255) agccagcGATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGGCCCGGCCCCGTTGCTGGCGCATATTTTCCAccaaaacat > 2:508129/1‑242 (MQ=255) ccagcGATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCg < 1:718712/250‑1 (MQ=255) gATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGgc > 1:265186/1‑250 (MQ=255) ttCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGTcgcg > 1:177103/1‑250 (MQ=255) tCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTTCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCgg > 1:904620/1‑250 (MQ=255) gCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGt < 1:337189/249‑1 (MQ=255) agagagTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCCTCGCTGGCGGGGTCACCCGcccg > 1:409433/1‑247 (MQ=255) agagTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGGCCAGTCCCAGTTGCCGGCGAATATTTTTCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTa‑a > 1:450974/1‑250 (MQ=255) aaTCGGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCCGTTGCTGGCGCATATTTTCCAC‑GG‑AAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAAGGAt > 1:318504/1‑249 (MQ=255) aaTCAGTAGTGCCAGCAACAGGGCACCAAAAGCCATCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCCATACCAATTTATGGCGAAAATTTTTCACGGA‑TA‑CATCGCCGCCGCCGGCACCCCCCCGTACACCCCCCCGGacccccgtagt > 2:844425/1‑239 (MQ=255) aaTCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCCTCGCTGGCGCGGTCACCCGCCCGTA‑ACCGCGCCGGATCACCAGGGATc > 1:115349/1‑250 (MQ=255) tGCCACCAGCAGGGCACAAAAAGCCGGCTCAGGCGCCGCCGGAAAAAATATCCCCAACCCTCCCACCCCCGGCCGCCCGGTCCGAATGTAGGTC‑CCCGGGCACCCAGAAAACAGT‑CCGCTGACGTGGGGGTAAAACTGACCATC‑CAGGGGCGGTCCCGGTCCCAGTTGCGGGCAAATTTTTCCCAC‑GA‑TAGCATCGCGGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCgag < 2:184967/250‑1 (MQ=255) agcagcagGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCCGTCCCAGTTGCTGGGGGAAATTTTTCCC‑GA‑TAGCATCTCTGGCGCGGTCACCCGCCAGCA‑ACCCCCCCGGATCCCCAGGGATCAGATGCgcggta > 2:674181/1‑244 (MQ=255) cagaggcgCACAAAAGGCCACCCCCCGCGTCGCCGGGAAAAATATCCGCACCTCTCCCAGCCCCGGCCGCCCGTTAAGAATGGATTTC‑CCCAGTTCCCCATGAAACGGG‑TCGCTGACGTGGCGATAAACCTGTACATA‑CAGTGGCGGGCCCAGTCCCAGTTGCGGGCAAATTTTTCCCAC‑GA‑TAGCACCGCGGGCGGGGCCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGataata < 2:340697/243‑1 (MQ=255) aaGCCAGCTCCAGCGTCGCCGGAAAAAATATACGCAACTCTCCCAGCACCGGACGCCGGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCGGGTCCAGCCCCAGTTGCGGGCAAATATTTCCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACAAGGGATCAGATGCGAGATAATAAACGTAATCACGCa < 1:806999/250‑1 (MQ=255) ccaccccccgcgcCGCCGGAAAAAATACACCCACCCCCCCCACCCCCGGCCGCCGGTTACGAA‑GGGTGTT‑CCCCAGCCCCCATGGAACCGGTTCGCTGCCGTGGGGGAAAACCTGTACATA‑CAGTGGCTGTCCCAGCCCCGGTTGCTGGCGAATATTTCCCAC‑GA‑TACCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GAc < 2:308318/241‑1 (MQ=255) cTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGGCCAGTCCCAGGTGCTGGCGAATATTTTCCAC‑GA‑AAGCATCGCTGGCGCGGGCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGAGCAGATGCGAGGTAATAAAAGTAATCACGCA‑GAcgccc > 2:499921/1‑250 (MQ=255) cggcgcCGCAGGAAAAAATATACGCAACTCCTCCACCCCCGGACGCCGGGTAAGAATGGATCTC‑CCCAGCCCACCAAGAAACGGG‑TCGCTGACGAAGGGGTAAAACGTTAAAGA‑GAGTGGCGGGTCCAGTCCCGGTGGCTGGAAAATATTTCCCAG‑TA‑TAGCTGCGCTGGGGCGGCCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GAcgcccgcc < 2:312707/248‑1 (MQ=255) gTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGccacca > 1:166758/1‑250 (MQ=255) gTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGGCCAGGCCCAGTTGCTGGCGAATATTTTTCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCAACAGGGAGCAGATGCGCGGTAATAAAAGGAATCACGCA‑GAAGCCCGccacca > 2:126268/1‑250 (MQ=255) ccGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAg > 1:638495/1‑250 (MQ=255) agaaaaaaaTATACGCACCTCCACCAGCCCGGGACGCCATAAACGATGGGATGTA‑CCCAGGTCACCATGAAACAGG‑TCGCGGACGGGGCGAAAAAACTGTACATC‑CGGTGGCTGCCCCGCCCCGTGTTGGAGGCAAATTTTCCCCAC‑GA‑TAGCATCGCGGGCGGGGTCCCCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGc < 2:931605/246‑1 (MQ=255) tataCGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCACTCCCCGTTGCTGGCGAATATTTTTCAA‑GA‑AAGAAACGCCGGCCCGGCCCCCCCCCCGGA‑ACCCCGCCCGGTCACCACGGAGCAGGCACGCGATAATAAAAGTAATCACGTC‑GAAGCCCCCCCCCACGATGACCACcccc > 2:173793/1‑250 (MQ=255) tctTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGtt > 1:782991/1‑250 (MQ=255) ccaccaCCGG‑CCCCCGGTACAGAAGGATTTTCCCCAGGTCCCCAAAAACCGGG‑CCGCTGCCGT‑GGGGAAAAAATTGACAAACCGGGGGCTGGCCCACCCCCAGTTGCGGGCAAATTTTTCCCAC‑GA‑TAGCACCGCGGGCGCGTCCCCCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTgg < 2:166758/248‑1 (MQ=255) ccAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCCGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGGCCCCCGCCAGTA‑ACCGCGCCGGATCACCAGGGGTCAGATGCGAGATAATAAAAGTAATCACGCAGGACACCCCCCCCCCCAGCCACAAGCCCCcacacccgtggcg > 2:868389/1‑239 (MQ=255) aGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTTCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGTCGCGGACACCCGCCAGTA‑ACCGCGCCCGGACAACAGGGCACCAATGCGGGATCACAAACCTAATCACGCC‑GACTCCCCCCCCCACGCGCCCCAGCCCCCCGCCGCGCTGGCGt > 2:36246/1‑249 (MQ=255) gACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGCTGCTGGCGAATATTTTTCAC‑CA‑TAGCATCGCTGGCGCGGGCACCCCCCAGTA‑ACCGGGCCGGAACCACAGGGATCAGCTGCGAGATAATAAAAGAAATCACGCA‑GTCGGCCGCCACCAACAGAACCACCCACCTGCAAGCATGGCGTACAATAcc > 2:358399/1‑249 (MQ=255) cGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGGATATTTTTCAC‑GA‑TAGCATCGCTTGCGCGGGCACCCGCCCGGA‑ACCGCGCCGGAACACCAGGGGTCAGATGCGAGATAATAAACGGAATCACGCA‑GAAGCCCGCCCCCCCCAGCACCCGCCCCCAGCACCGTTGGCGTAAAAAACTCCCGAAGGGCa > 2:295459/1‑250 (MQ=255) aTGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTAtt > 1:87421/1‑250 (MQ=255) aTGTT‑CCCAGGACCCAAAGAAAGGGG‑TCGCTGAGGTGGCGGAAAAATTGTACATA‑CAGGGGCGGGTCCAGCCCGTTTTGCGGGCAAATATTTCCCAC‑GA‑TAGCATCGCTGGCGCGGTCCCCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTAtt < 1:91624/250‑1 (MQ=255) cccAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGACACAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGGA‑ACCGCGCCGGATCACCAGGGATCAGATGGGAGATAAAAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGGTGGCGGAAAATACTCCAGAAGGCACCGTTATTTACTc > 1:560763/1‑250 (MQ=255) aCCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCCGTTGCTGGCGAATATTTTCCAC‑GA‑AAGCATCGCTGGCGCGGGCACCCGCCCGTA‑ACCGCGCCGGATCACCAGGGGTCAGATGCGAGGTAATAAACGTAATCACGCA‑GACGCCCGCCCCCCCGAGCACCAACCCCCACCAGCGCTTGCGTAAAAAACTCCCAAAAGGCACGCTATTTACCCATGGgatt > 2:583774/1‑250 (MQ=255) aaaCAGG‑GCGCTGAGTGGGAGGAAAACCTGTAAATA‑CAGTGGCGGTCCCAGCCCCGGTTGCGGGGGAAT‑TTTCGCAA‑GAGTAGCGTCGCTGGCGGGTGCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGtattgatatt < 2:876222/250‑1 (MQ=255) aGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCCGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCCTCGCTGGCGCGGGCACCCGCCCGTA‑ACCGCGCCCGATCCCCAGGGGTCAGATGCGGGATAATAAACGGAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCCGCCGCGTTGGGGGACAATACTCCAGACGGGCACGGTATTTACTCATTGgattggtattgga > 2:394776/1‑247 (MQ=255) gCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCGGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGGCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAAAGGAATCACGCA‑GACGCCCGCCACCACAGGCAACAACCCCCCGCAGCGGTGGGGGAAAATAACCCAGACGGGCACGGTATTTAATCATGGGATTGGTATTGAAGACCTg > 2:849597/1‑250 (MQ=255) cata‑caGTGCTTGGCCCATCCCCTGTTGCGGGCAAATTTTTCCCAC‑AA‑TAGCACCGCGGGCGCGGCCCCCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAAcaca < 1:408029/249‑1 (MQ=255) ata‑cgGGGGCTGGCCCAGCCCCAGTTGCGGGCAAATATTTCCCAC‑GA‑TAGCATCGCGGGCGCGGCCCCCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACaaa < 1:160254/250‑1 (MQ=255) gcccAGCCCCAGTTGCTGGCAAATATTTCCCAC‑GA‑TAGCATCGCGGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACctc < 1:394776/248‑1 (MQ=255) ccccATTTGCTGGAAAATTTTTCCCAG‑GA‑TGGCTCCGCGGGCGGGGACACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGAGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGtt < 1:540891/249‑1 (MQ=255) ggggAATTTTTCCCAC‑AA‑TAGCAGCGCGGGCGGGGCCCCCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGtt < 1:416428/247‑1 (MQ=255) caaaTTTTTCCCAC‑GA‑TAGCATCGCTGGCGCGGTCCCCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTgg < 1:499921/248‑1 (MQ=255) ttttCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGttt > 2:48806/1‑250 (MQ=255) | CCAGATGATCCAGCCAGCGATTTCGCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTT‑CCCAGGTCACCATGAAACAGG‑TCGCTGACGTAGCGGTAAAACTGTACATA‑CAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAC‑GA‑TAGCATCGCTGGCGCGGTCACCCGCCAGTA‑ACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCA‑GACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTT > NZ_CP009273/1554787‑1555281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |