New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1171385	111 (1.070)	3 (0.030)	3/468	18.3	2.8%	coding (503/1200 nt)	lolC	lipoprotein‑releasing ABC transporter permease subunit LolC
	?	NZ_CP009273	= 1171373	103 (1.040)					coding (491/1200 nt)	lolC	lipoprotein‑releasing ABC transporter permease subunit LolC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACAGCTAGGCGTTAATCGCGGTGATCAAATCCGCGTGATGGTACCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/1171298‑1171385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtaccatcACGCGGATTTGATCACCGCGATTAACGCCTAGCTGTGAGGCAAGTTGTTCGCCGAGGATGACATTATATTTCCCCGGCTCGAGGTCAGTTTGTTTCACATTGACCAGATACGGTGTAAGTGGATCTTTTTGCGCCGGGTCGATACCGAGCATCACCCCGACCGCCACGCTGCGCGCGCTTTGCAGTACCACATCACCGGTAGTAATAGGTGCGACGCGATTAACGCCGTCCAGTTTGACTGCC  <  NZ_CP009273/1171373‑1171131                                                                                                                                                                                                                                                                                                                                             CGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACAGCTAGGCGTTAATCGCGGTGATCAAATCCGCGTGATGGTACCATCACGCGGATTTGATCACCGCGATTAACGCCTAGCTGTGA                                                                                                                                                                                                               <  2:599397/126‑1                                        CACAGCTAGGCGTTAATCGCGGTGATCAAATCCGCGTGATGGTACCATCACGCGGATTTGATCACCGCGATTAACGCCTAGCTGTGAGGCAAGTTGTTCGCCGAGGATGACATTATATTTCCCCGG                                                                                                                                                                        <  1:599397/126‑1                                                               GATCAAATCCGCGTGATGGTACCATCACGCGGATTTGATCACCGCGATTAACGCCTAGCTGTGAGGCAAGTTGTTCGCCGAGGATGACATTATATTTCCCCGGCTCGAGGTCAGTTTGTTTCACATTGACCAGATACGGTGTAAGTGGATCTTTTTGCGCCGGGTCGATACCGAGCATCACCCCGACCGCCACGCTGCGCGCGCTTTGCAGTACCACATCACCGGTAGTACTAGGTGCGACGCGATTAAC                     >  2:686679/1‑250                                                                               TGGTACCATCACGCGGATTTGATCACCGCGATTAACGCCTAGCTGTGAGGCAAGTTGTTCGCCGAGGATGACATTATATTTCCCCGGCTCGAGGTCAGTTTGTTTCACATTGACCAGATACGGTGTAAGTGGATCTTTTTGCGCCGGGTCGATACCGAGCATCACCCCGACCGCCACGCTGCGCGCGCTTTGCAGTACCACATCACCGGTAGTAATAGGTGCGACGCGATTAACGCCGTCCAGTTTGACT     <  1:705556/250‑1                                                                                  TACCATCACGCGGATTTGATCACCGCGATTAACGCCTAGCTGTGAGGCAAGTTGTTCGCCGAGGATGACATTATATTTCCCCGGCTCGAGGTCAGTTTGTTTCACATTGACCAGATACGGTGTAAGTGGATCTTTTTGCGCCGGGTCGATACCGAGCATCACCCCGACCGCCACGCTGCGCGCGCTTTGCAGTACCACATCACCGGTAGTAATAGGTGCGACGCGATTAACGCCGTCCAGTTTGACTGCC  >  1:268633/1‑250                                                                                                                                                                                                                                                                                                                                             CGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACAGCTAGGCGTTAATCGCGGTGATCAAATCCGCGTGATGGTACCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/1171298‑1171385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtaccatcACGCGGATTTGATCACCGCGATTAACGCCTAGCTGTGAGGCAAGTTGTTCGCCGAGGATGACATTATATTTCCCCGGCTCGAGGTCAGTTTGTTTCACATTGACCAGATACGGTGTAAGTGGATCTTTTTGCGCCGGGTCGATACCGAGCATCACCCCGACCGCCACGCTGCGCGCGCTTTGCAGTACCACATCACCGGTAGTAATAGGTGCGACGCGATTAACGCCGTCCAGTTTGACTGCC  <  NZ_CP009273/1171373‑1171131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.