Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092732,145,1670GT39.1% 32.1 / 10.3 46intergenic (+40/+25)yegJ/pphCDUF2314 domain‑containing protein/protein‑serine/threonine phosphatase PphC
Reads supporting (aligned to +/- strand):  ref base G (15/13);  new base T (6/12);  total (21/25)
Fisher's exact test for biased strand distribution p-value = 2.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.13e-01
Rejected as consensus: Frequency below/above cutoff threshold.

CGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAA‑TTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGC  >  NZ_CP009273/2144920‑2145407
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                 
cGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAAAATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAA‑TTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAAttgtt                                                                                                                                                                                                                                                 <  1:935850/250‑1 (MQ=255)
 ggCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAA‑TTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAAttgttg                                                                                                                                                                                                                                                <  2:394923/250‑1 (MQ=255)
       tttATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAA‑TTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTCTTCa                                                                                                                                                                                                                                          <  2:375147/250‑1 (MQ=255)
           ttGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAA‑TTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTCTTCAA‑CCg                                                                                                                                                                                                                                     <  2:283619/250‑1 (MQ=255)
                                       tttaaaaaaCGTAGAATATGGCCAGAGGTGAAAAATAAAAAAAAAAGATATTACAGACGGGATGTATACGCGCGGGAAAAAAA‑TTTACGGGGGTTATCCTTTTGTTCTTTTTTTGGTCCCC‑TACCAAAAAAAAGAAGCGGAGGATCAAAAAAAAAAATTAGTTCGCTAATCAGCTTTTATATTTATTTTTAAAACGGGG‑GGTTGAATTGTTGTCTAAAA‑CCGCCATGAGAAACTCACTCTGCCCACAgc                                                                                                                                                                                                          <  2:340849/243‑1 (MQ=255)
                                                ataaaaaTATGGCGGGGAGAGAAAAAAAAAAAAAAAAGATTTTTCAGACTGGATGTACCCGGGCGGGAAAAAAT‑TTTAGGGCGTTTATACCATTAATCCTTTATGGTCCACT‑TACCAAAAAAAAGAAGCCGAGGAGCAAAGAAAAAAATTAGTTCGATAATCAGCCTTTATTTTTTTTTTTAAACCGGGC‑GTTTAAATTTTTGTCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCa                                                                                                                                                                                                <  2:84468/245‑1 (MQ=255)
                                                 gaaaaaTAGGGCCAGGAGGGAAAAATAAAAAAAAAAGATATTTAAGACTGAATGTATCCGCGGGGGAAAAAAA‑TTGACGGGGTTTATACCATTAATCTTTTATGGGTCCCC‑TACCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTAGTTCGCTAATCAGCCGTTATATTTATTTTTAAAACGGGC‑GGTTGAATTGTTGTCTTAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCaa                                                                                                                                                                                               <  1:904516/246‑1 (MQ=255)
                                                   agaagagggaaaGGAGTGAAAAAAAAAAAAAGAGGATATTGAAAACGGGATGTATCGGCGCGGGAATAAAA‑TTTAGGGCGTTTATCCGTTTGATCTTTTAGGGACCACC‑TACCAAAAAGAAAAACCCGACGAGAAAAGAAAAAAATGATTCCGCTAAACGCCCTTTATATTTTTTTTTAAAACGGGC‑GTTTAAATTGTTGTCTACAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg                                                                                                                                                                                             <  2:855431/239‑1 (MQ=255)
                                                                 aGTGAAAAATAAAGAAAGAAGATATTACAGACTGTATGTATACGCGGGGGGATAAAA‑TTGACGGGGGTTATACCATTGATCTTTTATTGGTCCCC‑TACCCAAAAAAAGAACCCGACGAGCAAAGAGAAAAATTAGTTCGCTAACCAGCCGTTATATTTATTGTTAAAACTGGC‑GGTTAAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATcc                                                                                                                                                                               <  1:903497/250‑1 (MQ=255)
                                                                                     gaTTTTTCAGATGGGATGTATACGCGGGGGAAAAAAA‑TTTACGGCGTTTATCCCATTGATCTTTTATGGGTCACC‑TACCAAAAAGAAAAGGCCGACGAGCAAAGAGAAAAATTAGTCCGTTAATCAGCCGTTATATTTTTTGTTAAAACGGGC‑GTTTGATTTTTTGTCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCgg                                                                                                                                                           <  1:12734/250‑1 (MQ=255)
                                                                                           gcgaaCTTGATGTAGCCGCGAGGGTATAAAA‑TGTGCTGCTATTATCTCTTTGAGCCTTTTTTGGTCCCT‑TACCAAAAAAAAAAAGACGACTGAAAAAGGGAAAATTTGTTTCGTTACTCCCCTGTTATTTTTATTGTATAACCTGGC‑GGTAAAGTTTTTCTCTTGAT‑CCGCCATGAGAAACTCACTCTGCCCACGGCGCCAGTGCCATCGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTgg                                                                                                                                                      <  2:363897/245‑1 (MQ=255)
                                                                                                         atccgggggggAAAAAATTTTACGGCGTTTATACATTTGATCTTTTATTGTTCCCC‑TACCAAAAAGAAGAAGCCGACGAGCAAAGAAAAAAATTAGTCCGCTAATCAGCCGTTATTTTTATTGTTAAAACGGGC‑GGTTGATTTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCtt                                                                                                                                         <  1:634386/242‑1 (MQ=255)
                                                                                                                gggaaaaaaa‑TTTAGGGCGTTTTTCCCTTTGATCTTTTATTGCCCCCC‑TACCAAAAAAAAAAACCCGACGAGTTAAAAGAAAATTTTGTTCTCAAACCACCCTTTATTTTTTTTGTTAAACCGGGC‑GTTTGATTTTTTGTCTTCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTc                                                                                                                                <  1:559855/244‑1 (MQ=255)
                                                                                                                   aaTAAAT‑TTTGCGGGGTTTATTCCTTTGATCTTTTTTTGCTCCCT‑TACCAAAAAAAAGAGGCCGACGAGCAAAGAAAAAAATTGTTTCGCAAATCAGCCGTTATTTTTATTTTTTAACCGGGC‑GGTTAATTTGTTGTCTTAAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAgg                                                                                                                             <  1:955888/249‑1 (MQ=255)
                                                                                                                        aa‑TTAACGGCTGTTATACATTTGACCTTTTATTGGCCCCC‑TACCAAAAAAAATAGCCCGACAAGTAAAAAGAAAAATTATTTCGCTAACCGGCCTTTTTATTTTTTTTAAAAACGGGG‑GTTTAATTTGTTGTCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaata                                                                                                                        <  2:767396/250‑1 (MQ=255)
                                                                                                                                ggcggTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTTTTCAA‑CCGCCCTGAGAAAATCACTCTGCCCCCAGCGCCAGTGCCAACGGTTTTTTATCATCCGTACGCCCGTTTTCCGCCGGGGTGGGCAAAAAATGCTTTTACAAATCAGGGAATAAAACGAg                                                                                                                 >  1:657452/1‑250 (MQ=255)
                                                                                                                                  ggtttATACATTTGATCCTTATTTGGCCACC‑TAACAAAAAAAAGAAGCCGACGAGAAAAGAGAAAAATTAGTTCGCTAATCAGCCTTTATTTTTATTTTTAAAACGGGC‑GGTTAATTTGTTTTCTTAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAgtt                                                                                                               <  2:86610/247‑1 (MQ=255)
                                                                                                                                     ttATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTTGATTTTTGTTTTCCA‑CCCCCCTTAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCTCGTTTATCCCCGGGCTGGACAACAAATGCTTTAACAATTTAGTGAATAAATCGAgttttt                                                                                                            >  2:583645/1‑250 (MQ=255)
                                                                                                                                      tataCCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTTTTGTCTTCAA‑CCGCCCTGAGAAACTCAATCTCCCCACACGGCCCCTGCCAACGCTTTCTTATTATCCGTACGCCCGTTTTACCCCGGGCTGGACCAAAACTGCTTTAATAATTTAGGGTATAAATCGAGTTGTTc                                                                                                           >  1:804918/1‑250 (MQ=255)
                                                                                                                                           taTTGATCTGTTATTGGTCACT‑ACTCCAAAAGAAGAAGCAGAAGAGCTAAGACAAAATTTATTCCGCAAAGCGGCTGTTATATTTATTG‑TTAAAATGGCGGGTAGAATTTTTGTCTTCAG‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCg                                                                                                      <  1:202254/249‑1 (MQ=255)
                                                                                                                                                gtCCTTTTTTGGTCCCCTTACCAAAAAAAAGAACCCACCGAGCAAAGAAAAAAATTATTTCCTTAATCGCCCTTTTTATTTTTTTTTAAACCGGGC‑GGTTGATTTTTTTTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTtg                                                                                                   <  1:415086/248‑1 (MQ=255)
                                                                                                                                                    tttATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTTTTTTCTTCCA‑CCGCCATGAGAAAATCACTCTGCCCACAACGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACCAAAACTGCTTTAACAATTCAGGTAATAAATCAAGGTGTTCCTGCGTTGCTgccg                                                                                             >  2:895129/1‑250 (MQ=255)
                                                                                                                                                       aTTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTTTCTTTAA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTTCCGCGGTGCTgccgccc                                                                                          >  1:588052/1‑249 (MQ=255)
                                                                                                                                                             cACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTTAATTTTTGTCTTCAA‑CCGCCCTTATAAAATCACTCTGCCCCCACCGCCCGTGCCAACGTTTTTTCATCCTCCCTACGCCCGTTTACCTCCTGGCTTGGCAAAAACTGCTTTTACACTTTAGGTTATAAATAGAGTTGTTCCTGCAGTGCTGACTCCCGTcccc                                                                                    >  2:937421/1‑248 (MQ=255)
                                                                                                                                                              aCC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGGGCCAACGGTTTATCATCATCCGTACGCCCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGGTGTTCCTGCGTTTCTGCCGCCAGTCCAtt                                                                                   >  1:735313/1‑250 (MQ=255)
                                                                                                                                                               cc‑TACCAAAAAAAAAAAGCCGACTATTAAAAAGAAAATTTATTTAGCTAACCGTCCTTTATTTTTAGTGTTAAAACGGGG‑GTTTGAATTTTTGTTTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTg                                                                                  <  1:735348/250‑1 (MQ=255)
                                                                                                                                                                       aaaaGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCt                                                                                                                                                                        >  1:788747/1‑157 (MQ=255)
                                                                                                                                                                             agaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTTTTGTCTTTAA‑ACGCCATGAGAAAATCCCTCTGCCCACAACGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTTCCGCCGGGCGGGGCAAAAAATGCTTTTACAATTTTGGTAGTAAATCGAGTTGTTTCTGCGTTGCTGCCGCCAGTCCATTGAAAAACgggggg                                                                      >  2:213469/1‑247 (MQ=255)
                                                                                                                                                                               aagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTTTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTATCATCATCCGTAAGCCCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAAAAATTTAGGTAATAAATAGAGTTGTTTCTGCGTTGCTGCCGCCAGTCCATTGAAAAACggggga                                                                      >  1:893438/1‑245 (MQ=255)
                                                                                                                                                                                agcaggcgagaaaaGAGAAAAATTGTTTCTATAATCAGCCTTTATTTTTTTTGTTTAAGCTGGC‑GGTTGATTTGTTGTCTCCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaaga                                                                  <  1:87349/238‑1 (MQ=255)
                                                                                                                                                                                agCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTCTTTAA‑CCGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaag                                                                   >  1:682699/1‑249 (MQ=255)
                                                                                                                                                                                  ccGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGGATTGTTTTCTTCTA‑CCGCCATTAGAAAACCACTCTTCCCACAGCGCCCGCGCCCACGCTTTATCATCATCCGTACGCTCGGTTACCGCCCGGCCGGGCAAAAAATTCTTTAAACATTCAGGTAATAAATCGAGTTGTTTCCGCGTTGCTGTCGCCAGTCCATTTAAAAACGGGGGaaaaaa                                                                 >  2:21720/1‑249 (MQ=255)
                                                                                                                                                                                   cgacgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGGTGAATTGTTGTTTTCAA‑CCGCCCTGAGAAAATCACTCTGCCCCCAGAGCCAGTGCCAACGTTTTATCCTACTCCGTACGCTCGTTTACCGCCGGGGTGGAAAAAAAATGCTTTAACAATTCCGGTAATAAATCGAGGTGTTCCTTCGTTGCTGCCCCCAGTCCATTTAAAAAAGGGGGgaaaaaag                                                               >  2:992614/1‑250 (MQ=255)
                                                                                                                                                                                     acgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTAGAGTGTTGTGTTTAA‑ACGACATGTGAGAAGCATTTCGCCCCCAGCGCCAGTGTCCACGCTTTTGCAGTTTCCCCACGGACCGATAACACCCGGCAGGAGCAAAACTGGTTTCACAAATTCGGTTATAAACACGGTTGTTACCGCGGTTGGGCCCCCCGTCCATTGGATAACGGGGTAAAGAAAGGc                                                             >  2:690346/1‑250 (MQ=255)
                                                                                                                                                                                                gaaaatTTAGTTCGCTATTCAGCTGTTATATTTATTTTTAAAGCGGGC‑GTTTTATTTTTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGgaga                                                  <  1:210034/248‑1 (MQ=255)
                                                                                                                                                                                                gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGGATTGTTTTCTTCAA‑CCGCCATGAGAAAATCACTCTGCCCCCAGCGCCAGGGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgaggag                                                   >  2:133503/1‑249 (MQ=255)
                                                                                                                                                                                                         gTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGGATTGTTGTCTTCAA‑ACCCCATGAGAAAATCACCCTGCCCACAGCGCCAGTGCCAACGGTTTTTCATCATCCGTAAGCCCGTTTACCGCCGGGCGGGGAAAAAACAGCTTTAACAATTCAGGGAATAAATTCAGGTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGGGAAGAAAGGCAAATGAGGGGGATTATTCac                                         >  2:334578/1‑249 (MQ=255)
                                                                                                                                                                                                             gCTAATCCGCCTTTTTTTTTTTTTTTTAAACTGGC‑TGTTAAATTTTTTTCTTCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCata                                     <  1:278736/250‑1 (MQ=255)
                                                                                                                                                                                                               taagcaccttttATATTTTTTTTTAAAACGGGG‑GGTTAATTTGTTGTCTCAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCatat                                    <  1:640217/239‑1 (MQ=255)
                                                                                                                                                                                                                aatcgccttttATTTTTTTTGTAT‑AACGGGG‑GGTTGAATTTTTTTTCTCAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGCAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATAttt                                  <  2:869684/241‑1 (MQ=255)
                                                                                                                                                                                                                   caccctttATTTTTTTTTTTAAAACGGGC‑GTTTAATTTGTTTTCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAAc                               <  1:783096/244‑1 (MQ=255)
                                                                                                                                                                                                                        gTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTCTTCAA‑ACGCCCTGAGAAAAACACTCTGGCCACAGCGCCAGGGCCAACGGTTTATTATCATCCGTACGCTCGTTTACCGCCGGGGTGGACAAAAACTGCTTTAACAATTCAGGGAAAAAAACGAGGTGTTCCTGCGTTGCTGCCGCCCGTCCCTTGAAAAAAGGGGTGAAAAAAGGCACAAGAGGAGAATTATCCAGCATATTTAACGcc                            >  2:109150/1‑248 (MQ=255)
                                                                                                                                                                                                                            ttttttttttttAACCGGGC‑GTTTGATTTTTTGTCTACAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCg                       <  1:819623/247‑1 (MQ=255)
                                                                                                                                                                                                                                   tGTTTAAACTGGC‑GGTTGAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATaa               >  1:634395/1‑249 (MQ=255)
                                                                                                                                                                                                                                           cTGGC‑GGTTGAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATACGt        >  2:717165/1‑249 (MQ=255)
                                                                                                                                                                                                                                               c‑GGTTGAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATCCCATCCGTAAAtg   >  2:239019/1‑250 (MQ=255)
                                                                                                                                                                                                                                                 gtgtGAATTTTTTTTCTCAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAtg   <  1:250916/247‑1 (MQ=255)
                                                                                                                                                                                                                                                 ggTTGAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAtgc  >  1:945266/1‑250 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                 
CGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAA‑TTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAATTGTTGTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGC  >  NZ_CP009273/2144920‑2145407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑