| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,738,854 | 0 | C | T | 36.7% | 78.8 / 13.3 | 49 | R231C (CGC→TGC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| Reads supporting (aligned to +/- strand): ref base C (4/27); new base T (18/0); total (22/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.33e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACAAGTTTCCGCCTGGCTGATTACCATTGCTGAACTGCCGATGATGGTTTCTGATTTACTGCAACCGTTGGTCGATTCACCGC > NZ_CP009273/3738615‑3739100 | ccctTTCCATTCCGTTTATTATTTGCGGCTTTCCCAGCGGATTATCCATCAGTAGGCTTTTTATGGCGGGCTTTGCCCCGGGCAGGATGATGGGCGCAACGCGGATGCTTACCGGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCt < 2:390901/250‑1 (MQ=255) cccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTTGCCCCGGccg > 1:853650/1‑249 (MQ=255) tCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTTCTTCCGGCCGG‑TTTTcccc > 1:634834/1‑250 (MQ=255) cGTTTATTATCTGCGGCGTTTCCTGGGGATTATCCATCAGTAAGCTTTTTGTGGCGGGCGTTGCCTGTTGCAGGATAAGGGGCGAAACGCTGATGCTTCCCTGGTGGTGGCAGGCAGGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTAc < 2:881995/250‑1 (MQ=255) gTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTAGGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGTTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTAcc < 1:141751/250‑1 (MQ=255) attatCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGaa < 1:378149/249‑1 (MQ=255) tatCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGGATGATGATGGGGGCAACGCTGATGCTTACCTTGGGGGGGCCGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAACAAAGATGCAGGAAAACTGGGACTCTTTTGTCTCCGGCATCTGGGCGCTGTTTTTTCCCGTCATCCTTATTGGC‑GGGGTTTTCTTCTGCCTG‑TTTTTCCCtcctctccac > 2:384397/1‑241 (MQ=255) cGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGGTTTTCTCCCGCCCGTTTTTCCCCCCCCAAAGCCGGGGc > 1:196815/1‑250 (MQ=255) aGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTTTCCCCGCCCGT‑TTTTCCCCCACCAAGGCCGGGGCGG‑tggtgcgt > 1:14809/1‑243 (MQ=255) cTGTTTATGGCGGGCATTGCCCCTGGCATGATGAGGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCca < 1:539996/250‑1 (MQ=255) tATGGCGGGCATTGCCCGTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCATTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGt < 1:728204/249‑1 (MQ=255) gCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTAttt < 1:863509/250‑1 (MQ=255) ttGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTTTCCCCACCTAAGCCCGGGCCG‑CTGCTG‑CTTTCTTTTCGCCGTTTGTCTCCCCAGTTATTTTACGTg > 1:430356/1‑249 (MQ=255) cccTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGGTTTGCTCCGGCCCG‑TTTTCCCCTACCCAAGCCCGGGCCG‑GTGCTG‑CTTTCTTTTCGCTGTTTGTTGCCCCAGTTATTTTACGTGAAAt > 1:29625/1‑249 (MQ=255) cTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGAc < 1:966596/250‑1 (MQ=255) gggtgtgatgatgGGCGAAACGCTGATGCTTACCGGGTGGGGGCGGCCCGGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCA‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGAcc < 2:793148/245‑1 (MQ=255) gCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCTTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑tt < 1:143995/250‑1 (MQ=255) atgatgatgGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCg < 1:441611/250‑1 (MQ=255) gatgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTTGCTCCGGCCTG‑TTTTCCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTTCCGTGAAATGACC‑TTCGcc > 1:868771/1‑250 (MQ=255) gatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGGTTTGCTCCCGCCTG‑TTTTTCCCTTCCCCAGCCGGGGGCG‑GTGGTGCCTTTTTTTGGGCTGTTTTTCCCCACA‑TTATTTTCCCTGAAATTACC‑CTCTccccc > 2:300772/1‑247 (MQ=255) atgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGGTTTGCTCCCTCCTG‑TTTTCCCCTACCGCAGCCGGGGGCGCTTGTTC‑CTTT‑TTTGCGCTTTTTTTTGCCCCAGTTATTTACCGTGAAACTACC‑tttccccccc > 2:562698/1‑242 (MQ=255) tgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACt < 1:365969/250‑1 (MQ=255) gcgcAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTg < 1:53657/250‑1 (MQ=255) gCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑CTGCTG‑CTTTCTATgcgc > 1:929404/1‑194 (MQ=255) aTGCTTCCCGGGTGGGGGGAGACAAGCCCCGTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCa < 2:166726/250‑1 (MQ=255) gCTTCCCGGGTGGGGGCAGGCCATTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCGCACTTTGGCATGTACTCAtt < 1:28364/250‑1 (MQ=255) cTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGGTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGGCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTTGCATGTACTCATTg > 1:60107/1‑250 (MQ=255) aCCGGGGGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTgg < 1:698318/248‑1 (MQ=255) cTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGGTTTTCTCCGGCCTG‑TTTTTCCCCACCCCAACCGGGGCGG‑GTGCTG‑CTTTTTTTTCGGCGTTTTTCGCCCCCATTATTTTTCGTGGAATGACCTTTCCCCCCACTTTGCCTTGtctccttttcgcg > 2:799127/1‑238 (MQ=255) cTGGTGGGGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGcgcg < 1:654923/250‑1 (MQ=255) gtggtggCAGGCCGGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCgcgg < 1:716892/248‑1 (MQ=255) gtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTTGCTCCCGCCCG‑TTTTCCCCCACCCAAACCCGGGGCG‑GTGCTG‑GTTTTTTTTCGCTGTTTTTTTCCCCACGTTTTTTTCGTGGAATGACC‑TTTTCCCCCCCTTTGCCTGTTCTCTTTTGTGCGGCGag > 2:262990/1‑248 (MQ=255) aGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTTGCTCCCGCCCG‑TTTACCCCCTCCGCAACCCGGGCCG‑GTGCTG‑CTTTCTTTTCGCTGTTTTTTGCCACAGGTATTTTCCGTGAAATGACC‑TTCGCCCCACTTTTGCATGTTCTCATTTGCGCGGGGCAAACCCCCTccg > 1:455854/1‑248 (MQ=255) aGTCCCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAg < 1:173482/250‑1 (MQ=255) gCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTTGCTCCGGCCCG‑TTTACCCCCACCGAAACCCGGGGCG‑TTGCTG‑CTTTTTTTGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAAAGACC‑TTCGCCCCACTTTGGGATGTACTCATTGGCGCGGCGAAAAACACCTCCGTGGt > 1:732295/1‑250 (MQ=255) gCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTTGCTCCCCCCTT‑GTTTCCCCTCCCCAACCCCGGGCCG‑TTGCTG‑CTTTCTTTTCGCTGTTTTTTGCCACCCTTATTTTCCGTGTAATGTCC‑TTCGCCCCCCCTTTGCATGTACTCATTTGCGCGGCGAAAAACACCTCACTggg > 2:717100/1‑249 (MQ=255) ttAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGGTTTGCTCCGGCCTG‑TTTTTCCCTACCCAAGACGGGGGCG‑GTGCTG‑CTTTTTATGCGCTGTTTTTTGCCCCCGTTATTTTCCGTGGAATGAAC‑TTCGCCACACTTTGGCGTGTACCTCTTTGCGCGGGGGAAACCCCCTccgcgggttt > 2:480398/1‑241 (MQ=255) ccccGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAACGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCtgg < 1:717346/250‑1 (MQ=255) gCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTTGCTCCCGCCTT‑TTTTCCCCCCCCCAAACCGGGGGCG‑GTGCTG‑CTTTCTTTTCGCTGTTTTTTGCCCCCATTATTTTTCCTGGAATGAAC‑TTCGCCCCCCTTTTGCCTGTACTCCTTTGCGCGGCGGAAACCACCCCCGTGGGTTTTTTTTttgtggg > 2:523235/1‑249 (MQ=255) aGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTTGCTCCGGCCTG‑TTTTCCCCCACCGAAGCCCGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCCCACTTTTGCATGTACTCATTTGCGCGGCGGAAACCACCTCCGTGGTTATGTTTCTGGTGGcccc > 1:397686/1‑248 (MQ=255) aGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTc < 1:864016/250‑1 (MQ=255) aaaaaGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTTGCTCCGGCCTG‑TTTTCCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTTTGCGCTGTTTTTCGCCACAGTTATTTTCCGTGAAATGACC‑TTCGCCCCACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCCGTGGGTATGTTTCTGGTGGCCTCgg > 1:942460/1‑249 (MQ=255) aGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACaa < 1:951136/250‑1 (MQ=255) cAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACAAGTTTCCGcc < 1:262990/249‑1 (MQ=255) aaaTCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACAAGTTTCCGCCTGGCt < 1:983163/250‑1 (MQ=255) ccGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACAAGTTTCCGCCTGGCTGATTACCATTGCTGAACTGcc < 2:982280/250‑1 (MQ=255) ggCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACAAGTTTCCGCCTGGCTGATTACCATTGCTGAACTGCCGATGATGGt < 2:68224/249‑1 (MQ=255) cgcTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACAAGTTTCCGCCTGGCTGATTACCATTGCTGAACTGCCGATGATGGTTTc < 1:227316/250‑1 (MQ=255) tttCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACAAGTTTCCGCCTGGCTGATTACCATTGCTGAACTGCCGATGATGGTTTCTGATTTACTGCAACCGTTGGTCGATTCACcgc > 2:803900/1‑250 (MQ=255) | CCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCG‑TTGCTG‑CTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACC‑TTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAGTGGTTATGTTTCTGGTGGCCTCGGCACAAGTTTCCGCCTGGCTGATTACCATTGCTGAACTGCCGATGATGGTTTCTGATTTACTGCAACCGTTGGTCGATTCACCGC > NZ_CP009273/3738615‑3739100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |