| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,407,992 | 0 | A | T | 35.2% | 132.3 / 28.4 | 71 | Y2* (TAT→TAA) *65K (TAA→AAA) | rcbA ralR | double‑strand break reduction protein RcbA type I toxin‑antitoxin system endodeoxyribonuclease toxin RalR |
| Reads supporting (aligned to +/- strand): ref base A (3/43); new base T (25/0); total (28/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.29e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCATTACACCGCCAGGCT > NZ_CP009273/1407744‑1408237 | aaaTTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTta < 1:139282/249‑1 (MQ=255) tGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTatat > 2:451620/1‑250 (MQ=255) aCGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑ACATTTtttatct > 2:298236/1‑246 (MQ=255) aCGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATg < 1:151986/249‑1 (MQ=255) aCGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATg < 1:199258/249‑1 (MQ=255) ttGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCat < 2:758833/250‑1 (MQ=255) tGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTTAATAT‑ACACCACCatt > 2:660577/1‑250 (MQ=255) ttattaATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTTCATTA‑AAACCTCCcttttt > 2:568353/1‑250 (MQ=255) attaATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTTAATAT‑AAACCTCCcttatttt > 1:786511/1‑248 (MQ=255) ttaATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑T‑ATTTTTTTCTATA‑ATACCTCCcctattatt > 1:497412/1‑250 (MQ=255) ataatCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTc < 1:560238/249‑1 (MQ=255) aatCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCT‑GAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGG‑T‑ATTTTTTATATTA‑AAAACCCCATTAtttttttcttt > 2:125222/1‑245 (MQ=255) gCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATTAATTA‑ACACCTCCCTTATTTTTTTCATGGGtt > 1:433744/1‑250 (MQ=255) tGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGCTTCTCGCAAATAAAATTTATCAGATTTACTTTCTGCACTCTGGAAACGACTGATTCTTTTTTACCTGAGATCATTTTTTCGCATTCTGATTTCGTTAGTATAGATTTTGAATAGCTTGTCCTGTTCGTAGGTGTGCCACCTTCCTTTTCAATAGTGGAGGT‑A‑AATTTTTATATAAGAAACCTCCTTTCTTAtttttttctgtttag > 2:633839/1‑238 (MQ=255) aaGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTATATTA‑ACACCTCCCTTTTTTTTTTCCGTGGGTTGtttt > 1:726189/1‑249 (MQ=255) gTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCTCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTTCCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACGCCTCCATTATTATTTCCAGTGGTTCGTTTAtt < 2:209578/250‑1 (MQ=255) ttAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTcc < 1:183418/249‑1 (MQ=255) aaTACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTATATTA‑ACACCTCCCTTATTTTTTTCTGTGGTTCGTTTATTTCATCtttttt > 1:487132/1‑247 (MQ=255) aaTACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGa < 1:12579/250‑1 (MQ=255) aaTACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGa < 2:830929/250‑1 (MQ=255) aTACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTAAATGA‑AAACCTCCCTTATTATTTTCAGTGGGTTGTTTTTTTTATCttttttg > 1:400672/1‑246 (MQ=255) cAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGcttctt < 1:794327/250‑1 (MQ=255) aTTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTTAATTA‑ACAACCCCCTTTTTATTTTCATTGGTTTGTTTTTTTCATCTTTTTAGTGGTTCtttt > 1:635486/1‑250 (MQ=255) cGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTATATTA‑AAACCTCCATTATTATTTTCAGTGGGTCGTTTTTTTTATCTTTTTAGTGCttttttttttct > 1:268234/1‑246 (MQ=255) cTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAACAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTccacc < 2:316387/250‑1 (MQ=255) aaGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTACATGT‑ACACCTCCCTTTTTATTTTCACTGGTTCGTTTTTTTCCTCTTTTTACTGCTTTTTTTTTTCTtcctccct > 1:499886/1‑247 (MQ=255) aaGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGATTGCTTCTTTTTCACTTCCACCAT‑a < 2:543182/250‑1 (MQ=255) cAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑AATTTTTTATTGA‑AAAACTTCCTTATTTTTTTTAGTGGTTTTTTTTTTTTCTTTTTTTAGTGTTTCTTTTTTTCTTTTACCCT‑ACCCCGTTctg > 1:293878/1‑248 (MQ=255) aaTTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGc < 1:673505/250‑1 (MQ=255) tATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTTTATGA‑ACACCCCCCTTTTTTTTTTCCGTGGGTTGTTTTTTTCCTCTTTTGAGTGGTTTTTTTTTTCTTTCCCCCT‑TACCCGTTTGGGGTTTGCCTcc > 1:69244/1‑250 (MQ=255) tCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGt < 1:460592/250‑1 (MQ=255) aGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTTCATTA‑ACACCTCCCTTATTTTTTTTATTGGTTTGTTTTTTTTATCTTTTTCGTGTTTTTTTTTTTCTTTCTCCAT‑AACCCGTTCGGGGTTTGCATCCGttt > 1:110373/1‑249 (MQ=255) ttACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTATATTA‑ACACCCCCATTATTTTTTTCTGTGGTTTGTTTTTTTCATCTTTTTTGTGCTTTTTTTTTTCTTTCTCCAT‑AACCGGTTTGGGGGTCGCACCCGTTACACt > 1:213948/1‑250 (MQ=255) tCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTAAATGA‑AAACCTCCATTATTATTTTCATTGGTTCGTTTTTTTCCTCTTTTGTGTGCTTTTTTTTTTTTTCCCCCAT‑TACCGGTTCTGGGTTCTCATCCGTTTCACtttcctc > 2:7882/1‑245 (MQ=255) ctctctGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCgg < 1:636773/248‑1 (MQ=255) ctctctGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTa < 2:822854/250‑1 (MQ=255) ttttACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑T‑ATTTTTTACATTA‑AAAACTCCCTTTTTTTTTTCCTTGGGTCGGTTTTTTCTTCTTTTTTGGGGTTTTTTTTTTCTTTCACCCT‑CACCCGTTCGGGGTTTGCCTCCGTTTCACTTCTCTCCGTCATTATCTGCAATAGCTTTTAccc > 2:680310/1‑249 (MQ=255) ttttACCTGAGAGCAGTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATCTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCa < 2:425512/247‑1 (MQ=255) tACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGtt < 1:391900/249‑1 (MQ=255) agagCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGa < 1:635224/248‑1 (MQ=255) tttCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACca < 1:672258/249‑1 (MQ=255) tCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGTAA‑ATTTTTAAAATAA‑AACCCCCCTTTTTTTTTTCCATGGGTTGGTTT‑TTTCATATTTCGTGTGCTTTTTTTTTTCTTTCACCCTAAACCGGTT‑GGGGTTTGCATCCGTTTTACTTCCCCCCGTAATATCCTGTAATTGGTTTTAACGCTTCTGATTGGAC‑ACAACAAAAAgg > 1:348625/1‑249 (MQ=255) aTTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATg < 2:799324/250‑1 (MQ=255) ttAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTaa < 1:765047/250‑1 (MQ=255) aGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAAc < 1:568158/249‑1 (MQ=255) tttAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTACATGA‑AAACCCCCATTATTATTTTCAGTGGTTCGTTTATTTCATCTTTCGAGTGCTTCTTTTTTACTTCCACCAT‑AACCGGTTCGGGGTTCGCCTCCGTTACACTTCGCTCGGGAATATCCTGAAAAGGCTTTCACCGTTACTGA‑TGGACAACCACAAAAAAGACATGGTTTAACAtt > 1:177459/1‑250 (MQ=255) tAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTg < 1:568353/249‑1 (MQ=255) gATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTTTCTGT‑ACAACCCCCTTTTTTTTTTCCTTGGGGTTTTTTTTTCTGCTTTTCACTGCTTCTTTTTTTCTTTTCCCAT‑CACCCGATTGGGGTTTGCCTCCGTTATACTTTGCTCCCCTATATTCTGTAAAGGCCTTCTCCCTTTCATA‑TGTGGAACAACAAAAAAGAAATGGTTTATCaattttc > 2:256293/1‑244 (MQ=255) gATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTACATTA‑ACACCTCCCCTATTTTTTTCACTGGGTCGTTTTTTTTATCTTTTTAGTGGTTTTTTTTTTCTTTCCCCCT‑AAACCGTTTGGGGTTTGCCTCCGTTTCACCTTTCTCGGTAATATACTGACATAGCTTTTACCGCTACTGA‑TGGACAAACACAAAAAAGAAATGGGTTTAAAttttta > 1:732528/1‑246 (MQ=255) ttGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCatat < 2:123557/249‑1 (MQ=255) aaTATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTACATTT‑AAACCCCCCTTTTTTTTTTCCATGGGTCGTTTTTTTCCTCTTTTTCGTGCTTTTTTTTTTCTTTCCCCCT‑AAACCGTTCGGGGTTTGCCTCCCTTTCACTTCTCTCCGTAATATTCTTAAATTGGTTTCACCCTTTCTGA‑TGGGCAAACCCAAAAAGGAAATGGGTTAAAATTTTCCTAtctcc > 1:201505/1‑249 (MQ=255) tatCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATa < 1:803317/250‑1 (MQ=255) tatCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATa < 1:365895/250‑1 (MQ=255) tCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATaa < 1:236254/249‑1 (MQ=255) tCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATaa < 1:596448/249‑1 (MQ=255) gTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTTTAAATTA‑AAACCCCCCTTATTTTTTTCAGTGGGTTGTTTTTTTCATCTTTTTTGTGCTTTTTTTTTTCTTCCCCCCT‑AAACGGTTTGGGGGTCGCCTCCGTTACACTTCTCTCGGGAATATCCTGAAAAGGCCTTTACCCCTACTGA‑TGGGAAACCCCAAAAAAGACAAGGTTTTACATTGTTCTATCTCATAAttttt > 1:801160/1‑250 (MQ=255) gTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAAttt < 2:331025/248‑1 (MQ=255) tCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAAttttt < 1:874090/249‑1 (MQ=255) aGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCa < 2:439446/250‑1 (MQ=255) agtagGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACGCCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATaa < 1:446789/249‑1 (MQ=255) cACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCAGTAATATCCTGAAACGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCaa < 1:448915/250‑1 (MQ=255) ccttccttTTCAATAGGGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGt < 2:665106/250‑1 (MQ=255) ccttTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTg < 2:88179/248‑1 (MQ=255) ttCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGt < 2:151732/249‑1 (MQ=255) tCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTATATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTg < 2:386560/249‑1 (MQ=255) aaTAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCa < 2:515266/249‑1 (MQ=255) aaTAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCa < 2:210870/249‑1 (MQ=255) aTAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCAtt < 2:635486/250‑1 (MQ=255) tGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCATTacac < 2:206469/250‑1 (MQ=255) gT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGTCGGTGCATTACACCGc > 2:62993/1‑248 (MQ=255) gT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCATTACACCGc > 2:703078/1‑248 (MQ=255) aTTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCATTACACCGCCAGGc < 1:344940/250‑1 (MQ=255) ttttATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTGACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCATTACACCGCCAGGCt < 2:652987/250‑1 (MQ=255) | AAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACAATGCAATTCTCGAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTTCAATAGTGGCGGT‑A‑ATTTTATACATGA‑ACACCTCCATTATTATTTCCAGTGGTTCGTTTATTCCATCTTTCGAGTGCTTCTTTTTCACTTCCACCAT‑AACCGGTTCGGGATTCGCATCCGTTACACTTCGCTCGGTAATATCCTGAAATGGCTTTCACCGTTACTGA‑TGGACAACCACAAAATGGACATGGTTTAACATTGTCATATCTCATAATTTTTCTCATAAAAAATATTTCAAGTTGGCGGTGCATTACACCGCCAGGCT > NZ_CP009273/1407744‑1408237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |