| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,429,975 | 0 | G | A | 37.2% | 138.5 / 30.7 | 78 | intergenic (‑99/+42) | uspF/ompN | universal stress protein UspF/porin OmpN |
| Reads supporting (aligned to +/- strand): ref base G (44/5); new base A (0/29); total (44/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.32e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGCACCACCCG > NZ_CP009273/1429732‑1430222 | agGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAg < 1:706400/250‑1 (MQ=255)agGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAg > 1:324576/1‑250 (MQ=255)agGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAg < 1:85726/250‑1 (MQ=255) gTGAAGGTATTACCGTCAGGAAATGAACCTCTGCAGCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGcc < 2:518618/250‑1 (MQ=255) gAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCa > 2:147982/1‑249 (MQ=255) aaGGTATTACCGTCAGAAAATGAACCTCTGCATACTCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCAt < 2:297729/249‑1 (MQ=255) ggTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATaa > 2:644911/1‑249 (MQ=255) tATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAg > 2:424573/1‑250 (MQ=255) tACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCgg > 1:783686/1‑250 (MQ=255) gAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAAc > 1:395378/1‑236 (MQ=255) aCCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGaa > 1:101557/1‑250 (MQ=255) ccTCTGCATCAACAATCTTTCCCTTCTCATCAACGTGAAAAATCACGTGTGGATTTATTTCAGAAGCGAAAATATGAATAGGAAAAAAATTCGTTCTGTTCATAACCCCTCTTTTTTTATTACCCGAATAAGGTTAAACGCCAGATGACTTTTTTGGTATAATGAGGGTTTTCACTTTTTT‑AATTAAGAAAAAG‑GGAGAAAAAAAAAAA‑AAAAAACGCCCGCCATAACAGCGGGCAGGAGGATTTAGAAc < 2:591292/250‑1 (MQ=255) tcataaATTTTTCCCTCTTCCTCAACGTGACTAATCACGGTTTGAGTTAATTCTGAAGAGAAAATATCGATAGGAAAAAGAATCGTTCTTTACAAAAAACCTCTTGTTTTAGTATCCGCATAAAGGGAAACGCCAAATGACTCTTTTTGTGTAATGACGGAGTTCACATTTTC‑AATTTAGAAAAAA‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc < 2:730492/250‑1 (MQ=255) tttttGCCCTTTCCTCAACGGGGATAATCACGCTTTGAGTAAATTCTGAATCGAAAATATAGAAAGGAAAAAAAATCGTTCTGTTAAAAAACCCTCCTTTTTTATTACCCGAATAAAGTGTAACGCCAGATGACATTTTTTGTGAAATGACGGAGTTCACTTTTTT‑AATTTAGAACAAA‑GGAGAAAAAATAAGA‑AAAAAACGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCt < 2:375906/248‑1 (MQ=255) ttGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTa > 1:132909/1‑248 (MQ=255) cgCCTTTTCCGAAACGTGGCTAATCACGTGTTGAGTTAATTCTAAATCGAAATGATGGATAGAGAAAAGATTCGTTTTTTTCAAAAACCCTCGTTTTTTATTACCCAAATAAATTGAAACGCCAAATGACATTTTTTGTATAAGGACGGATTTCACATTTTA‑AATTTAGACAAAA‑GGAGAAAAAATAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTa < 2:351015/246‑1 (MQ=255) ctTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGCGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGAc > 2:214430/1‑249 (MQ=255) cAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatca > 1:10714/1‑250 (MQ=255) aCGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatcatc > 1:522109/1‑250 (MQ=255) ggCTACACACGTGTTGATTTAATTCTAAACAGAAAATATAGAGAGGAAAAAGAAGCGTTCGTTTAAAAAACCCTCTTTTTTAATTACCCAAAAAAAGTGTAACGCCAAAGAACTCTTTTTTTGAAAGGGGGGAATTCCAATTTTA‑AATTAAGA‑AAAA‑GGAGGAAAAAAAAACAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTa < 2:297386/250‑1 (MQ=255) tAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTa > 2:41859/1‑247 (MQ=255) aaTCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTa > 1:837748/1‑246 (MQ=255) gcggtgttttttAATTGTGAAGGGAAAATATGGAGAGGGACAAAAATCTTTGTGTACTAAAATCCACCTGTTTTAGTATCCACAAAAAATGAAGCACCAGAGGGCTGTTTTTGTGGAAGGACGAAGTACACATTTTT‑AATTTGGAAGAAA‑GGAGAAAGAAAAAAT‑AGAAAAGGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGcc < 1:503495/240‑1 (MQ=255) cgcgTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGCGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCa > 2:839713/1‑250 (MQ=255) ctttGTGTAAATTCAAAAACGAAAATATGGAAAGAGAAAAAAATCGTTTTGTTAAAAAACCCTCCTTTTTTAGTACCCGCAAAAAGTATAACGCCAGATGACTTTTTTTGTAAAAGGAGGGATTTCATATTTTA‑AATTAAGAAAAAA‑GGAAAAAAAAAAAAA‑AAAAAAACCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCAtt < 2:786741/248‑1 (MQ=255) tttGAGTTAATTCTAAAACGAAAATATCAAAAGGAAAAAAAATTTTTTTTTAAAAAAACCCTCTTGTTTTATTACCCGAAAAAAGTGAAACGCAAGATAACTTTTTTGGTGAAATGACGGATTTAATTTTTTA‑AATTAAAAAAAAA‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCAtt < 2:391227/248‑1 (MQ=255) gTTGAGTTAATTCTGAATCGGAAATATCGATAGGAAAAAGAATCTTTCTGTTAAAAAACCCCCCTTTTTTATTACCCGCAAAAAGTGAAACGCCAGATGACATTTTTTGTGAAATGAGGGATTTCACATTTTT‑AATTAAGAAAAAG‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTg < 1:139384/250‑1 (MQ=255) gAGTAAATTCTAAAGCGAAAATATCGAAAGGGACAAAAATCTTTCTGTTCAAAAAACCTCCTTTTTTATTATCCGAAAAAAGTGTACCGCCAGATGACTTTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAAAACAAA‑GGAGGAAAAATAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGc < 1:75823/249‑1 (MQ=255) cTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAg > 2:378121/1‑250 (MQ=255) cTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAg > 1:740059/1‑250 (MQ=255) aatagaaattatCGATAGGAACAATAATCTTTTTATTCAAAATCCCTCTTGTTTAATTACCAGTAAAAATTACACCGCCATAGCATATTTTTTGTTTAATGACGGTTTTCACTTTTTT‑ATTTAAGAAAAAG‑GAAGGAAAAAAAAAA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCt < 2:783686/240‑1 (MQ=255) aaccgaaaaTATGAATAGGGACAAAAATTTTTCTTTTAATAAACCCTCCTTTTTTAGTATCCGCAAAAAGTGTAACACCAGATGACTTTTTTTGTAAAAGGACGGAGTTCACTTTTTT‑AATTTAGAACAAA‑GGAGGAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTg < 2:35328/244‑1 (MQ=255) ggAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGCGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCAt > 1:865484/1‑250 (MQ=255) ggAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCAt > 2:716310/1‑250 (MQ=255) cGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATc > 1:452383/1‑249 (MQ=255) aTAGGGACAAGAATCTTTCTGTTAAAAAAACCTCCTTTTTTATTATCCGCAAAAAGTGTAACGCCAGATGACATTTTTTGTGAAATGACGGATTTCACATTTTT‑AATTTAGAAAAAA‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCaa < 1:53284/250‑1 (MQ=255) aaGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGa > 1:695172/1‑250 (MQ=255) tCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGt > 2:37431/1‑250 (MQ=255) cTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGATCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCCGACCTAAAGCGACAATGTCAACGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGt > 2:700485/1‑249 (MQ=255) ttaaaaaaaCCTCTTTTTTTATTATCCGAAAAAAGTATAACGCCAGATGACTTTTTTTGTGAAATGAGGGAGTTCACATTTTT‑AATTAAGAGAAAA‑GGAGAAAAAAAAAAA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTc < 2:102275/242‑1 (MQ=255) taaTAAACCCTCTTTTTTTAGTACCCAAATAAAGTGTACCCCAAAATAACATTTTTTTTGAAATGA‑GGAATTTCCATTTTTAAATTTAGAAAAAA‑GAGGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAAc < 1:565508/247‑1 (MQ=255) aTAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACg > 1:461789/1‑248 (MQ=255) cttttttAGTACCCGAAAAAAGTGAAACCCAAGATGACTTTTTTTGTGTAATGACGGATTTCACATTTTT‑AATTTAAAAAAAA‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACAt < 1:276119/246‑1 (MQ=255) tGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGt > 2:460949/1‑250 (MQ=255) tttagttcccaaaTAAAGTGAAACGCAAGATGACTTTTTTTGTGTAGTGACGGATTTCATATTTTT‑AATTAAGAAAAAA‑GGAGGAAAAAAAAGA‑AAAAAAACACCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGttt < 1:875361/237‑1 (MQ=255) tAGTATCCGCATAAAGTGTAACTCCAGATGACCTTTTTTGTTAAATGACGGAGTTCACTTTTTT‑AATTTAGATCAAA‑GGAGAAAAAAAAAGC‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGttttt < 1:44200/249‑1 (MQ=255) tAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTa > 1:223934/1‑250 (MQ=255) ccGCATAAAGTGTAACGCCAGCTGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGaaa > 2:473731/1‑250 (MQ=255) cacaaaaaGTGAAACCACAGATGACTTTTTTTGTGAAAAGACGGAGTTCACATTTTA‑AATTAAGAAAAAA‑GGAGAAAAAAAAAAA‑AAAAAAACCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGaaa < 2:647613/244‑1 (MQ=255) cGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGaaa > 1:542041/1‑249 (MQ=255) aaaaaGTGAAACGCCAGATGACATTTTTTGTGTAAGGAGGGAGTACACATTTTA‑AATTAAAAAAAAA‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGt < 1:732536/248‑1 (MQ=255) tAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGt > 1:201582/1‑249 (MQ=255) aaaGTGTAACGCCAAATGACTCTTTTTGTATAATGAGGGATTTCAATTTTTA‑AATTAAGAAAAAA‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTaa < 1:213341/250‑1 (MQ=255) aaGTGAAACCCAAGATAACTTTTTTTGTGAAATGACGGAGTTCAATTTTTT‑AATTTAAAACAAA‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAg < 1:266701/250‑1 (MQ=255) ccAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCaa > 2:198734/1‑249 (MQ=255) caagatgtctttttttGTGAAATGACGGAGTTAAAATTTTT‑AATTAAGAAAAAA‑GAAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAat < 1:419819/239‑1 (MQ=255) aGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAatat > 1:261705/1‑250 (MQ=255) aTGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCCAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTG‑AATAGTAAGTCGCGCCAATATCgg > 1:617271/1‑250 (MQ=255) tGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCgg > 2:17965/1‑250 (MQ=255) gACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGc > 2:676486/1‑250 (MQ=255) actttttttGTGAAATGACGGAGTTCACATTTTT‑AATTTAGAAAAAA‑GGAGAAAAAAAAAGC‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGc < 1:360250/245‑1 (MQ=255) cTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAt > 1:705346/1‑250 (MQ=255) tttGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAttt > 2:402254/1‑249 (MQ=255) aTGACGGAGTTCACATTTTT‑AATTAAAAACAAA‑GGAGAAAAAAAAAAA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGAt < 1:392332/249‑1 (MQ=255) aCGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCtt > 1:158688/1‑249 (MQ=255) aCGGAGTTCACATTTTA‑AATTTAGATAAAA‑GGAGGAAAAAAAAGC‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCttt < 1:228774/250‑1 (MQ=255) aCGGAGTCAAAATTTTA‑AATAAAGAAAAAA‑GGAGAAAAAAAAAAA‑AAAAAAACCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCttt < 2:324576/250‑1 (MQ=255) cGGAGTTCATATTTTT‑AATTAAGATAAAG‑GGAGAAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTa < 1:797/250‑1 (MQ=255) cGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTa > 2:733299/1‑250 (MQ=255) aagtcaacatttt‑AATATAAAACAAAGGGAGGAAAAAAAAGA‑AAAAAAGCCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTatc < 1:487422/241‑1 (MQ=255) tttt‑AATTTAGAAAAAA‑GGAGGAAAAAAAAGA‑AAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACAcc < 1:658998/249‑1 (MQ=255) tt‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCTGCGTATTTAACCAGATCTTTATCATCAACACCtac > 2:605843/1‑248 (MQ=255) tt‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGc > 2:741394/1‑250 (MQ=255) tt‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGc > 1:499679/1‑250 (MQ=255) aaTTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCg > 1:84600/1‑250 (MQ=255) gATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGt > 2:170860/1‑250 (MQ=255) a‑ggaggAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGcac > 1:761875/1‑250 (MQ=255) aggaAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGcaccac > 1:309305/1‑250 (MQ=255) gaaTAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGCACCACCCg > 1:31391/1‑248 (MQ=255) | AGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTT‑AATTTAGATCAAA‑GGAGGAAGAATAAGC‑AGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGCACCACCCG > NZ_CP009273/1429732‑1430222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |