mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| MC JC | 2,278,396 | (TTATCGCCT)2→1 | coding (542‑550/1761 nt) | yejM → | LPS biosynthesis‑modulating metalloenzyme YejM |
| RA | 4,323,070 | G→A | P10L (CCA→CTA) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 235892 | 270719–269666 | 33775–34828 | 85 [0] | [47] 48 | yafV–[BW25113_RS01325] | yafV,ivy,fadE,lpcA,yafJ,dpaA,yafQ,dinJ,yafL,rayT,BW25113_RS01160,lafU,dinB,yafN,yafO,yafP,BW25113_RS01190,prfH,pepD,gpt,frsA,crl,phoE,proB,proA,BW25113_RS01235,ykfI,yafW,ykfH,ykfG,yafX,ykfF,BW25113_RS01265,BW25113_RS25425,BW25113_RS25430,BW25113_RS25435,yafZ,ykfA,perR,BW25113_RS01295,BW25113_RS01300,BW25113_RS01305,ykfC,[BW25113_RS01325] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 20563 | NA (NA) | 88 (0.960) | 78/496 | 0.3 | 96.7% | intergenic (‑55/+252) | BW25113_RS00100/rpsT | IS1‑like element IS1A family transposase/30S ribosomal protein S20 |
| ? | NZ_CP009273 | = 1767035 | 3 (0.030) | coding (267/1266 nt) | ydiN | MFS transporter | |||||
| * | ? | NZ_CP009273 | = 235891 | 0 (0.000) | 85 (0.930) | 76/496 | 0.4 | 100% | intergenic (+26/+15) | BW25113_RS25420/yafV | ISAs1 family transposase/2‑oxoglutaramate amidase |
| ? | NZ_CP009273 | 269666 = | NA (NA) | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase | |||||
| * | ? | NZ_CP009273 | 360104 = | 41 (0.450) | 60 (0.650) | 49/496 | 2.1 | 53.8% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 62 (0.680) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 19 (0.210) | 78 (0.910) | 73/464 | 0.3 | 84.9% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 10 (0.120) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 19 (0.210) | 72 (0.840) | 63/464 | 0.7 | 83.8% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 10 (0.120) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 1767027 = | 7 (0.080) | 86 (0.940) | 74/496 | 0.4 | 92.5% | coding (259/1266 nt) | ydiN | MFS transporter |
| ? | NZ_CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑209) | BW25113_RS17830/BW25113_RS25760 | IS1‑like element IS1A family transposase/protein YrhD | |||||