| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,354,816 | 0 | A | C | 37.2% | 90.2 / 10.2 | 51 | G26G (GGT→GGG) | rhmD | L‑rhamnonate dehydratase |
| Reads supporting (aligned to +/- strand): ref base A (21/11); new base C (0/19); total (21/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.18e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATATCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAG‑CCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCG > NZ_CP009273/2354571‑2355044 | atatCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTGCGACAATAAAACAG‑CCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCAcc‑gc < 2:1181034/250‑1 (MQ=255) cccTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAG‑CCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTct < 2:315005/249‑1 (MQ=255) ttAAGATGTTTTTCGACAATAAAACAG‑CCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAg < 1:764886/250‑1 (MQ=255) ttctacagaaaaaaaaCAGCCCCATTCCCCCGGCTTTCGAACCGGC‑AAACCCGTCTGGGCCGTTTCCTGCTCCGACTTCAACAACCAGCGTGCA‑AAGAACTTTAATGCAAAAT‑AGCGGGCGTGACTGCTCGTAATCGCGGTATTCCCTCACCGGGGGGGAAATATGCCCGTCTACCCAGTGATTCCCCCCCTGGT‑CGTG‑ATAATCCCC‑GCCGCCAGCGCTTTTTTCTGCTGT‑CGCACCGCCAGTAAAcc < 2:182538/237‑1 (MQ=255) cATTTCACCGGCTGTCGAAACGGCGAACCCGGTCT‑GGCCTTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCCCC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAAttttt < 1:1403767/250‑1 (MQ=255) aTTTCACCGGCTGTCGAAACGGCGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTg > 1:909713/1‑250 (MQ=255) cGGCTGTCGAAACGGCGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGCACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTCCTGT‑CGCACCGCCAGTAAAGCCGTCGCGCACCTGTTTGATTTTTGGCAGGGt > 2:1229951/1‑250 (MQ=255) ttcaaaaCGGCTACTCCGTTTG‑GGCCGTTTCCTGTTCCCATTTCAACCCCCACCGCGCC‑AAAATCTTTAATCCCAAAT‑TCCGGGCGTGCTTCCTCTTACCCGTGTTTTTTCCTCACGGGGGTGGCAATATTCCCTTCTTCCGATTAATTCCCCCCCTGGC‑CGTG‑ATATCCCCC‑GCCCCCAGCGCCTTTTTCTGTTGT‑CGCGCCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCatga < 2:1371514/246‑1 (MQ=255) gTCGAAACGGTGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCatga > 1:111464/1‑250 (MQ=255) cGAAACGGCGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCatgatg > 1:521623/1‑250 (MQ=255) ggggcacccGGTCT‑GGCCGTTGTGTCTGTCGCCTCAAACACCCACGGGGCC‑AGGTACGTTAATGCAAAAT‑GGCGGGCTTGCCTGCTCGTAGTCGGGGTTTTGCCTCATCGGGGTGACAAAATGATGGGCTATCCGGTGATTCCCCCCGTGGT‑CGTA‑ATATTCCCG‑GCCGCCAGCGCTTTTTTCTGCTTG‑CGCGCCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTcc < 2:1202850/243‑1 (MQ=255) gctcccGGTCT‑GCCCGTTTCCTGTTTCGCTTCCAACACCAATGGTCCA‑AAGAACTTAAATCCCAAAT‑GCCGGGCGTGCCTCCCCGTATCGGGGGTTTTTACTCATGGGGGTGGAAATATGTCCTTTTACCAGGTGATTCCCCCCCGGTT‑GGTA‑ATAACCCCC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCAtt < 2:580931/246‑1 (MQ=255) gAATCCCGTCG‑AGCCGTTTTCTGCCTCGCCTCAAACAACCAACGCGCC‑AAGAACGTAAATGCAAAAT‑GACTGGCGTGACTGCTCGTAATCGGTTTTTTCCCTCATCGGGGGGACAATATGCTCGTCTACCCAGTATTTCCCCCCCGGGT‑CGTA‑ATAATCCCC‑GCCCCCAGCGCTTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCAtt < 2:251562/250‑1 (MQ=255) aTCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCGGTTTCATTTTTGGTAGGGTTATGATGTTCTCCCTTGt > 2:601080/1‑250 (MQ=255) cGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTAt > 1:999822/1‑250 (MQ=255) gTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACGGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGAAATAGGATCGTCTATCCAGTGTTTCGCCCCTTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGa < 1:1170308/250‑1 (MQ=255) cGTTTTTCGCTGCGACTACAACGACCAACGCGCA‑AAGAACGTTAAGCCAAAAT‑GACGGGCGGGCCTGCTGTGAATCGCGTTATTTCCCCATCGGGGTGCAAAAATGATCGTCTACCCAGTGATTCCCCCCCTGGT‑GGGG‑ATAACCACC‑GCCGCCAGCGCTTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGt < 2:1059622/250‑1 (MQ=255) ttttCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGt > 1:566094/1‑248 (MQ=255) tttttcttccgccTTAAACAACCAAGTGGCA‑AAAAACTTTAACCCAAAAT‑GCCTGGCGGGCTGGCTGGTAACCGGGGTTTTTACCCTGCGGGGGGGAAATATGTCCGTCTTCCCAGTGATCCCCCCCCTGGT‑CGTA‑ATAATCCCC‑GCCGCCAGCGCTTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTaa < 2:601105/237‑1 (MQ=255) tGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCa > 1:957278/1‑249 (MQ=255) gCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCa > 1:990972/1‑248 (MQ=255) cTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGAGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAg > 2:1202536/1‑250 (MQ=255) cGACTAAAACAACAAACGTCCC‑AAAATCGTAAAGGCAAAAG‑GACTGGGGGGACTGCCAGAAAGGGCGGTTTTACCTCACGGGGGGGGAAAATTGTTCTTTTACCCAGTG‑TTCCCCCCCTGGG‑GGGG‑AAAAACCCCGGCCGCCAGCGCTTTTTTCTGCGGC‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAggg < 2:544747/249‑1 (MQ=255) actaaaacaacC‑ACGGGCCAAAGATTGTTAATGCAAAGT‑GACGGTCGGTCCTGCCCGTAATCGGGTTTTTTCCTCATGGGGGTGGAAATATGATCTTCTATCCAGTGATCCGCCCCCGGTT‑CGTA‑ATAATCCCC‑GCCGCCAGCTCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACt < 2:1154864/245‑1 (MQ=255) ttCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACttt > 1:266025/1‑250 (MQ=255) acacccaagtgacc‑AAGAACGTTAATGCAAAAG‑GACGGGCGTTCCTGCTCGAAATCGGGATATTTCCTCTTGGGGGTGGAAATATGTTCGTCTCTCCTGTGTTTCCCCCCGTGGT‑CGTG‑AAAATCCCC‑GCCGCCAGCTCTTTTTTCTGCTGT‑CGAACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCa < 2:209270/238‑1 (MQ=255) acaacCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAATTCAAAGGGACTTTTCCa > 2:1134613/1‑250 (MQ=255) caaccaacGTGCC‑AAGAACGTTAATGCCAAAT‑GACGGGCGTGACTGCTCTTAATCGCGGTATTTACTCAGCGGGGTGGCAATATGATCGTCTATCCAGTGTTTCGCCCCCGGGT‑CGTG‑ATAATCCCC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCAt < 1:1413372/250‑1 (MQ=255) aaccaacGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATc > 2:826940/1‑250 (MQ=255) cccaacGTCCA‑AAGAACGTAAAT‑CCAAATGGCCGGGGGTGACTGTTGTAAATCGGGTTTTTTACTCTGGGGGGTGCCAATATGATCTTCTCCCCAGTG‑TTCCCCCCCTGGTCCGTG‑ATAACCCCC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATcc < 2:909713/249‑1 (MQ=255) cgtaac‑AAGAACTTGAATGCAAAGT‑GACGGGCGTCACTGCTCGTAACCGGGTTTTTAACTATGCGGGGTGCAAATATGATCGTTTCCCCATTG‑TTCCCCCCCCTGT‑CCTGAAAAATCCCG‑CCCGCCAGCGCTTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACa < 2:1170322/245‑1 (MQ=255) gTGCC‑AAGAACGTTAATACCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCAGCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAg < 1:381644/250‑1 (MQ=255) aTGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGGATTTACTCATCGGGGAGGCAATATGATCGTCTATCCAGTGATACGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGACTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAACTTTTGGTGGGGTCATGATGGTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGCATTTTCCATTCCAAACGCCGTGAAATATCCCt > 2:1132037/1‑250 (MQ=255) acaaaaG‑GACGGGGGGGACGGCTCGAAGTCGCGGTATTTCCTAATCGGGGTGAAAAATTGATCTTCTCGCAGGGTATTCCCCCCCTGGT‑CGTA‑AAAACCCCC‑GCCGCCAGCGCTTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTgg < 2:999822/247‑1 (MQ=255) ccAAAT‑GATGGGCGTGACTGCTCGTAATCGGGGTATTTACTCGTCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGG‑CGTA‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTgg < 1:998450/249‑1 (MQ=255) cAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGCTCTGAAATATCCCTGgcc > 2:794943/1‑249 (MQ=255) gcctgctgGTAATCGCGTTATTTACTCATGGGGTTGGCAATATGTTCGTCTACCCAGTGTTTCGCCCCCTGGT‑CGTG‑ATAACCCCC‑CCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCGtt < 1:1149108/248‑1 (MQ=255) gTAACCGCGGTATTTACTCCGCGGGGCGGCAATATGCCCTCCTACCCTGTGTTTCGCCCCCGGGT‑CGTG‑ATAACCCCC‑GCCGCCAGCGCTTTTTTCTGCTGC‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGc < 2:240727/248‑1 (MQ=255) gTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCCGATAATCAc > 1:655993/1‑250 (MQ=255) tcctcacgggggTGACAATATGACCGTCTACCCAGTGATCCGCCCCGGGGG‑CGGG‑AAAATCCCC‑GCCCCCAGCCCTTTTTTCTGCTGT‑CGCGCCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTa < 1:168464/241‑1 (MQ=255) agcGGGGTGGCAATATGATCTTCTACCCAGTGTTTCG‑CCCCTGGTCCGTA‑ATAACCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTAttct < 1:13074/246‑1 (MQ=255) tCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATACCAACAGGCGTGAAATATCCCTGGCGCAGGCAATGGCCTCGCACGCCAGATAATCACGGTATTCTTCa > 2:325326/1‑250 (MQ=255) cGGGTTGGCAATATGATCTTCTATCCAGTGATCCGCCCCTTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCAt < 1:176280/250‑1 (MQ=255) cGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCAt > 1:323702/1‑250 (MQ=255) cGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCAt > 2:156537/1‑250 (MQ=255) ggggggAAATATGATCGTCAATCCAGTGATCCGCCCCCTGGT‑CGTG‑AAAACCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTg < 1:1252301/250‑1 (MQ=255) aaTATGTTCGCCTATCCATTGATTCGCCCCCTGTT‑CGTG‑ATAATCACC‑ACCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTa < 1:1320689/250‑1 (MQ=255) aaTATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGt > 2:56212/1‑249 (MQ=255) gTCTATCCAGTGATCCGCCCCCTGGT‑CGTG‑ATAATCCCC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTAc < 1:902227/250‑1 (MQ=255) cAGTGTTTCCCCCCCGGGT‑CGAG‑AAAACCCCC‑GCGGCCAGCGCTTTTTTC‑GCCGTCCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGacc < 2:680453/248‑1 (MQ=255) gCCCCCTGGT‑CGTG‑ATATTCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAACGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCCATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCg > 2:107512/1‑249 (MQ=255) | ATATCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAG‑CCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCT‑GGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCC‑AAGAACGTTAATGCCAAAT‑GACTGGCGTGACTGCTCGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCTGGT‑CGTG‑ATAATCACC‑GCCGCCAGCGCCTTTTTCTGCTGT‑CGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCG > NZ_CP009273/2354571‑2355044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |