| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,360,878 | 0 | T | C | 29.0% | 127.7 / 12.7 | 69 | I110T (ATC→ACC) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| Reads supporting (aligned to +/- strand): ref base T (27/22); new base C (0/20); total (27/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.32e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCG > NZ_CP009273/2360634‑2361127 | cgcACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATccccc < 1:1007481/250‑1 (MQ=255) cacaGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCtggtg < 1:1172946/250‑1 (MQ=255) acaGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCtggtgg < 1:1200211/250‑1 (MQ=255) gCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGTTTCAGTCACGTTACTTGCGACTT‑AATTATTTTCCCTTATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATAACCCGccccggggca > 1:1203176/1‑241 (MQ=255) gAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTTAGTCACCTTTACGGCGGCTT‑TATTTTTACCCCTGATGCCGATCTCCAGAAA‑ACTCCCCAAGAAATACCCCCCCccgtgggccaaaacg > 1:1194486/1‑241 (MQ=255) aTCGTTGGGGAAAGAGTAGGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGAt < 1:114328/250‑1 (MQ=255) ttGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAg < 1:34410/250‑1 (MQ=255) tGGGGAAAGAGTGTGAGATCCTGCTGATTGATGACGCAAGTAGCGATAATCCCGCGCATATGCTGGTCGAGGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATg < 1:243226/246‑1 (MQ=255) tGGGGAAAGAGTATGAGATCCTGCTGATTGGTGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCAAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTTCCCTTGATGCCGATCTCCAGAAT‑CCGCCAAAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGa < 1:118260/247‑1 (MQ=255) gggAAAGAGTATGTGTTCTTGCTGATGAATGACGGAAGTGGCTATAATCCGGGGCTAATCATGGTCGAGTCCTCACAGGCGGAAACCAGCCATATTGTGTCTATTTTGCTTAGCCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTAATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGtt < 2:614004/250‑1 (MQ=255) gAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTac < 1:1102423/250‑1 (MQ=255) agTATGAGATCCTGCTGATGGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGt < 1:769689/250‑1 (MQ=255) agaTCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTAACAAGCGGAGACCAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGGTCTCCAGAAA‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAg < 1:378647/249‑1 (MQ=255) ctgATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTAc < 1:1269995/250‑1 (MQ=255) atgaGGGCAGTAGCTATAATTCCGCTCATATGCTGGTCAAACCCTCACAAGCGGAGACCAGCCATATTGTGTCTATTTTGCTTAACCGCAATTCCGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTCCCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGa < 2:994287/249‑1 (MQ=255) atgaCGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAAAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGaa < 1:802141/250‑1 (MQ=255) aGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATAGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGa > 1:835208/1‑248 (MQ=255) cgcTTATGCTGGTCAAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGTTTCATTCACGTTACTGGCGACTT‑AATTATTCCCCTTGATGCCGTTCTCCAGAAC‑CCGCCAGAAGAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTaa < 1:1162875/250‑1 (MQ=255) aacccTCACAAGCGGAAACCACCCATTTTGTTTCTATTTTGCTTACCCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCCCGTTACTGGCGACTT‑AATTATTCCCCTTGATGCCGATCCCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAgat < 1:424231/247‑1 (MQ=255) cacgcgaacaccAGCCATTTTGTGTCTTTTTTGCTAAACCGCATTTACGGGCAACATTCAGCTATTAGGGCGGATTTCAGTCGCGTTACTGCCGATTT‑ATTTATTCCCCTGGATGCCGATCTCCAGATC‑CCGCCAGAAGAAACCCCCCGCCTGGGGGCAAAGGCCGATGAAGGTTCCGACGTGGTAGGCACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAAcc < 2:910228/239‑1 (MQ=255) aaaGCGGAAAACAGCCATTTTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGAATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAAcc < 1:433601/249‑1 (MQ=255) gggacaaaacccATTTTGTGTGTTTTGGGTTTAACCAGAATACCGGAAAACTTCCAGCTTTTAGGGCGGGTTTCAGGCACGTAACGGGGAACTA‑AATAATCCCCCTTGATTCCGACCTCGAAAAC‑CCGCCAGAAGAAACCCCCCGCCTGGTGGCAAAAGCCGATGAGGGTTACGACGTGGTAGGGACTGAACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCt < 2:1196877/240‑1 (MQ=255) cAGCCATTTTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTA‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAg < 1:1009996/250‑1 (MQ=255) cATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCATTCACGTTACTGGCGGCTT‑TTATATTTCTCTTTTTGCCGCTCTCCCCAAA‑ACCCCAGCAGAAATACCCCGCCTCGTGGCGAAAACCGATGAAGGTTACGACGTGGTGGGGGCTGCTAGCCATAACCGCCAGGAAAGCTGGGTTGTTGAAACAGCTTCGAAGACGTTTAACCAGCGTATTCactgca > 2:481405/1‑245 (MQ=255) tgaTTTTGCTAAACCAAAATCAGGGACAACATTACGGTTTTATGGCGGAATCCAGCCACTTTCCTGACAACTT‑AATTATCCCCCTGGAACCCGATCACAAGAAC‑CCGCCAAAAGAAACCCCCCGCCGGGTGGCAAAGGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCa < 2:382141/247‑1 (MQ=255) gttGCTTACCGGCATTAACGGAAACAATTCAGCTATTCTGGCGGTATTCGCTCACGTTCCGGGCAACTA‑ATTTATTCCCCTTGATCCCGCCCCCCAAAAC‑CCCCCAAAAGAAACCCCCCGCCTGGTGGCAAAGGCGGATGAAGGTTACGACGTGGTAGGGACTTTCCGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGc < 2:1418409/248‑1 (MQ=255) tcctaacccGAAATTACGGGAACCATGCAGCGATAAGGGCGGGTTCCAGTCACGTTACTGGCGATTT‑ATTTATTACCTTTGATGCCGATCCCCAGAAT‑CCGCCAAAAAAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGa < 2:467338/242‑1 (MQ=255) aaTTCCGGGCACCATCCAGCGATTATGGCGGGATTCAGCACCGTTACTGGCGACTT‑AATTATTCCCCTTATTGCTGACCCCAGGAAT‑CCCCCAGAAAAATCCCCCCGCCTGGTGGAAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACg < 2:266190/250‑1 (MQ=255) aaTTACGGGAAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACg < 1:61001/250‑1 (MQ=255) cATTCAGCGATTATGGCGGGATTCAGCCGCTTTACGGGCGACTT‑AATTATTCCCCTTGATGCCGATCTCCAAAAC‑CCGCCAAAAGAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTAtgctgc < 1:1286754/250‑1 (MQ=255) aTTCAGCAATTATGGCGGGATTCATTCACTTTACTGGCGACTT‑AATTATTCCCCTTGATGCCGATCTCCAGAAC‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTgcg < 1:177585/250‑1 (MQ=255) gaTGGGGGGTTCCAGTCAGGTTACGTGCTAATT‑AATTTTTCCCTTGGATGCCGACCTCCAAACC‑CCGCCAGAAGAAACCCCCCGCCGGGTGCCAAAACCCGATGAAGGTTACGACGGGGTAGGAACTTTCCGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCg < 2:670504/248‑1 (MQ=255) ggATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGATTCGAAGATGATTAAACGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCata > 1:788781/1‑250 (MQ=255) gATCCAGTCACTTTACGGGC‑ACTTAAATTCTTCCCTTTTATGCCGATCCCCAGAAC‑CCCCCAGAAAAACCCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAAAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCatat < 2:1203176/250‑1 (MQ=255) aGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTc > 1:1412910/1‑249 (MQ=255) aGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTc > 1:1165168/1‑249 (MQ=255) tCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgat > 2:1137651/1‑250 (MQ=255) cGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCAc > 1:132217/1‑250 (MQ=255) gACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCTGTCATATTGTCGATGCGATGTTGCACt > 1:1315855/1‑250 (MQ=255) aaTTATTCCCCTTGATGCGAATCTCCAGAAT‑CCGCCAGAAGAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTCCGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCa < 1:1257830/249‑1 (MQ=255) attattACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGCAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCAGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCAt > 1:938272/1‑249 (MQ=255) ttattaCCCTGAATGCCGTCCTCAGGAAC‑CCGCCAGAAGAAACCCCCCGCCTGGTGGCAAAAGCAGATGAAGGTTACGACGTGGTAGGGACTGTACTCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa < 1:942565/250‑1 (MQ=255) tattcCCCTTGATGCCGATCTCCAGAAC‑CCGCAAAAAGAAACCCCCCGCCGGGTGGCAAAAGCCGATGAAGTTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa < 1:1268684/249‑1 (MQ=255) tattaCCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGaa > 1:133999/1‑250 (MQ=255) tattaCCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGCATGCTGCGCGCCTATCGCCGTCTTATTGTCGATGCGATGTTGCACTCCCACGaa > 2:672530/1‑250 (MQ=255) attaCCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAAc > 1:336812/1‑250 (MQ=255) ttaCCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGTACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGACGCTGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTTTGCTGCGCGCCTATCGCCGTCATATTTTCGATGCGTTTTTGCACTTCCCTGAACg > 2:203626/1‑250 (MQ=255) ttaCCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACg > 1:816760/1‑250 (MQ=255) atcccccTGGTGCCGATCCCCAGAATCCCGCCGAAAAAAACCCCCCGCCGGTGGGAAAAAGCCGAGGAAGGTTACGCCGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGaa < 2:935011/246‑1 (MQ=255) taCCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACg > 1:615057/1‑249 (MQ=255) ccccTTGATGCCGATCTCCAGAAT‑CCGCAAGAAGAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgc < 1:558958/248‑1 (MQ=255) cccTTCAGGCCGATCCCCAAAAC‑CCGCAAAAAGAAACCCCCCGCCTGGTGGCAAAGGCCGAGGAGGGTTACGACGTGGTAGGGACTTTCCGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcag < 1:246318/250‑1 (MQ=255) tatgccctaTCCCCAGAAC‑CCCCCAGAAGAACCCCCCCGCCTGGGGGAAAAAGCGGATGAGGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcagca < 2:736644/240‑1 (MQ=255) ccGACCGCCAAAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTAt < 1:100900/250‑1 (MQ=255) cGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCCTTATc > 2:74365/1‑250 (MQ=255) gATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGCAGAGGATTAACCGGCATATTCAGCGCACCACGGGCAAAGCGATGGGTGATTACGGTTGTATGCTGAGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCAcatctttcc > 2:741973/1‑242 (MQ=255) ctcCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGa > 1:861566/1‑250 (MQ=255) cccAGAAC‑CCGCCAAAAGAACTCCCCCGCCTGTTGGCAAAGGCCGAGGAGGGTTGCGACGTGGTAGGGCCTTTCCGCCAAACCCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGAt < 2:1368406/249‑1 (MQ=255) ccaaGAAC‑CCCCAAGAAGAACCCCCCCGCCTGGGGGAAAAGGCCGAGGAGGGTTCCGACGTGGTAGGGCCGGTACGCCAAACCCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGAt < 2:134206/247‑1 (MQ=255) cataaT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGGAAGCCAGAACCGACAGGAAAGCTGGTTTCGTAAAACCGATTCGAAGATGATTAACCGGCTGATTCAGCGCACAACTGGCAAAGGGATGGGGGATTACGGTTGAAGGCTGAGAGCCTATCGCCGTCATATTATCGATGCGAGGTTGCACTGCCATGAACGACGAACCTGTATCCCGAtgc > 2:1280904/4‑248 (MQ=255) aGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCt > 1:1003366/1‑250 (MQ=255) t‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGTTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGCTTCTGGc > 2:169870/1‑249 (MQ=255) ccccAGAAGAACCCCCCCGCCTGTTGGAAAAGGCGGATGAGGGTTGCGAGGGGGAAGGGCCTGACCGCAAAAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGaa < 2:389761/248‑1 (MQ=255) cGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGAGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTGGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGaa > 1:212477/1‑250 (MQ=255) cGCCAGAAGAAATCCCCCGCCTGGCGGCAAAAGCCGATGCAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGCTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCCCCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATCGTCGATTCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTTTGGCGaa > 2:1270162/1‑250 (MQ=255) gCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGaa > 1:499221/1‑249 (MQ=255) ccAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAata > 2:350085/1‑250 (MQ=255) caagaaaaaCCCCCCGCCTGGGGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAatat < 1:838547/244‑1 (MQ=255) gaaCTCCCCCGCTGGGTGGAAAAAGCGGAAGAAGGTTGCGACGTGGTGGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTcg < 1:1058502/250‑1 (MQ=255) tCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGCCGTGGTAGGGACTGTACGCCAGAACCGCCCGGACAGCTGGATTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTCTTCAGCGCACCACTGGCAAAGCGACGGGTGATTACGGTTGTATCCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCCCTGACATGAACGCAGCACCTTGATTCCGATTCTGGCACATATCTTcgcccg > 2:1330946/1‑250 (MQ=255) | CGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTT‑AATTATTACCCTTGATGCCGATCTCCAGAAT‑CCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCG > NZ_CP009273/2360634‑2361127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |