| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,036,390 | 0 | A | G | 41.2% | 71.1 / 17.6 | 53 | N206D (AAT→GAT) | srkA | stress response kinase SrkA |
| Reads supporting (aligned to +/- strand): ref base A (15/15); new base G (21/0); total (38/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.75e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATGCGGCGTTGGGCTGATCCC > NZ_CP009273/4036145‑4036638 | cGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGCAGGTTTTCCCGGTTTGCGGGTAAATGGAGACTTCCACGCCGGGGatat > 1:669659/1‑250 (MQ=255)cGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGAGTTCACCGTTCTGCGGCTACATGGGGACTGCCCCGCCGGGGatat > 1:1346374/1‑250 (MQ=255) gTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGATTTCACCCTTCTTCGGCTACATGGAGACTGCCACGCCGGGaggatta > 1:573218/1‑244 (MQ=255) tGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTCCATGGGGACCGCCACGCCGGGAAGATtttc > 2:96778/1‑250 (MQ=255) tGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCCCCGGGTACATGGAGACAGCCACGCCGGGGATATtttc > 1:1308721/1‑250 (MQ=255) ggCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTctct < 1:1096713/249‑1 (MQ=255) gCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGAATTTACCGGTCTGCGGCTACATGGAGACTGGCAAGCCGGGGATATTctcttg > 1:525462/1‑248 (MQ=255) gTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGCAGGTTTCAACGTTTCGCGGCTTCATGGAGACTGTCTCGCCGCGCATTCTCTCTGgcg > 2:119762/1‑250 (MQ=255) tttAGGTCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAt < 2:784150/250‑1 (MQ=255) tatggtgTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACACGTCTCTGGCTTCATAGGGACAGCCACGACGGGGATCTTGTCTGGCGGGCTgg > 1:1182898/7‑250 (MQ=255) tAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGAATTTAACGTTTCTCGGCTACATGGAGACCAGCCCGCCGGGGATATTCTCTGGcgcggttg > 1:735077/1‑246 (MQ=255) gggCGGATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGAATGCCGCCGTTACAGCACACTGGCGGGGAGAGTTCACCGCTATGCGGGCACACGGCGTCACCCACGCCGGGCAACGTCTCTCGCGCGATggat > 2:1393434/1‑248 (MQ=255) ccAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTTTCTGGCGCGGTGGTCCAAcgtttttt > 1:757905/1‑250 (MQ=255) gcAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTCTCGGTCTGCGGCCACATGGGGAATGCCACGCCGGGGATAATCTCTGGGGCGATGGTGCAATGTTTGTTGGTCTGggtga > 1:1323607/1‑250 (MQ=255) ttttATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCCACCTGGGGACTGCCACGCCGGGGATATTCTCTGGCGCGCTGGGCCAATGTTTGTTGGTCTGGGTGATTCAA‑GGAAt > 1:182784/1‑250 (MQ=255) cGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGGTACAAGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGGTGGGCCCATGTTTTTTGATTTGGGTGATGCAC‑GTAAAGGTCccgcc‑g > 1:833234/1‑250 (MQ=255) ccccAACCATGGGTGTGACCAAATATCTCTTTGGCCCACGAAGGCTGTTTGAGGACGCTACCCTGATCCCTCCCGGGTTGAAAGCGGCATTCCGGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑Gt < 2:103816/249‑1 (MQ=255) cGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGGGACTGCCACGCCGGGGGAATTTTCTGGCGCGCTGGGTCGCTGTTTTTTGTTCTGGGTGTGGCCC‑GTAATGGTCTAGCC‑Gtt > 2:733792/1‑248 (MQ=255) gACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTTTCTTGCGCGGTGGTCCCATGTTTGTTGATCTTGATGAAGCCA‑GTAATGGTCCAACC‑GTTccg > 1:183979/1‑248 (MQ=255) ccATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGa < 1:1184264/250‑1 (MQ=255) atatCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGGTCTGCGGGCACATGGGGACTGCCCCGCCGGGGATATTCTCTGGCGCGGGGGGCCCATGTTTGTTGATCTGGGTGAAGCAC‑GTAATGGGCCAGGC‑CGTCTGGATTTGTGGGTGTTGCt > 1:775698/1‑249 (MQ=255) atatCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTc < 1:766734/250‑1 (MQ=255) gCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTTCGGCGACATGGGGACTGCCACGCCGGGGGAATTTTCTGTCGCGGTGGGCCCCAGGTTTTTTTTCTGGCTGAGGATC‑GTAATGGTCCCGCC‑GGTCCGGGTTTTTGGGTGTGGGTC‑AAAGGGGGTAAAACCgc > 2:1012040/1‑249 (MQ=255) aaGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGATTTTACCGTTCTGCGGCCACATTGGGAATGCCCCCCCGGGGGTATTTTTTTGCGCCCTGGTCCCAAGTTTTTTTATTTTGGTGAAGCACTCAAATGGTCCCCCC‑G‑TCCGGGTTTTTGGGTGTTTGTC‑CATGGGGGTTAAGCCGggc > 2:133409/1‑250 (MQ=255) gAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGCTCTGCGGCTACATGGAGGCTGCCACGCCGGGAATATTTTCTGGCGCGCTGGGCCAATGGTTGTTGTGCTGGATGATGTAC‑GTAATGGTGCAGCC‑GTTCAGGATTTGTGGGTGTTGTTC‑CATGGCGATAAAACCGAGAAGGGGGTg > 2:677026/1‑249 (MQ=255) cGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCCCGCCGGGGATATTCTCTGGCGCGGTGGGCCCATGTTTGTTGATCTGGGTGATGCAC‑GTAATGGTCCCGCC‑GTTCCGGATTTTTGGGTGGTGCTC‑AATGGCGATAAAGCCGAGCAGCGGagtcaaatg > 1:835591/1‑242 (MQ=255) gCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGGGGGTACCTGGGGACTTCCCCCCCCGGGATATTTTCTTGCGCGCTGGTCCAATGTTTGTTTGTCTGGGTGATGCCC‑GTTATGGTCCCGCC‑GTTCCGGCTTTTTGGGTTTTTGTC‑CATTGCGGGTAAGCCGAGCCGGGGGTGCGAATgg > 2:897324/1‑250 (MQ=255) aCCTTCCGGGTTGAAAGGGGAATTCCGGAAAGCGACAGAGGAGCGGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTattatt < 2:672975/250‑1 (MQ=255) ccTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAAAATTCACCCTTCTGCGGCTACATGGAGACTGCCCCCCCGGGGATATTTTCTGGCGCGCTTGTCCAATGTTTTTTTATCTTGTGTATGCCC‑GTAATGGTCCAGCC‑GTTCCGGGTTTTTTGTTGTTTGTC‑CATTGCGGTGAAGACGAGGAACGGGAGCAACTTGAAAATattattt > 2:1402908/1‑249 (MQ=255) ggTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTCCCCCTTTTCGGCTACCTGGAGACTGCCACGCCGGGGATAATTTCTTGCGCGGTCGTGCAATGGTTGGTGGTCTTGGTGATGAAC‑AGAATGGCGGAACC‑GTTCAGGGTTTGTTGGGGTTGCTCTAAGGGCG‑TAAAATACAACAGGGGGTGCAACTTGAAAACattatttgaacttt > 2:24847/1‑242 (MQ=255) ggCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAAttt < 1:96778/250‑1 (MQ=255) cGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGATTTTACCCCTTTGCGGCTACACGGGGACCGCCACGCCCGGGAAATTTTCTGGCGCGGTGGTGCAATGTTTTTTGATCTGGGGGGTGGAC‑GGCAAGGGGCAAGC‑GCTCCGGAGTTGTGGGTGTTGCTC‑CATGGGGAGAAAGACCAGCAGGGGGGGGAACTGGGAACTATTCTTGAAGGTTAAGCAGAATTCAggcaggttgggac > 2:1185862/1‑238 (MQ=255) aGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAAATTTTACCGTTCTGCGGGTACATGGAGACTGCCCCCCCGGGGAAATTTTCTTGCGCGGTGGGCCCAAGTTTGTTGGTCTGGGGGGTTCAC‑GGTATTGTCCAGCCGGTTCGGGGTTTG‑GGGTGTTTCTC‑AATGGCGGTAAAAGCGCAGAGCGGGTGCCAACGGGAACTTTTTTTTTAGATTTTGAAAAATTTAACGGGTTCGAGACCGcg > 2:199194/1‑249 (MQ=255) ggCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCCACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGACAt > 2:675369/1‑250 (MQ=255) gAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGtt > 2:123247/1‑250 (MQ=255) gATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTgg > 2:492543/1‑250 (MQ=255) ccGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTttatta > 2:690760/1‑250 (MQ=255) ccGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTttatta < 1:1080636/250‑1 (MQ=255) gTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATc < 1:1329993/250‑1 (MQ=255) gTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATc > 1:1254930/1‑250 (MQ=255) cTGCAGCTAGATGGTGTATGAGACGCAGGGAATATTCTCTGGAGCGATGGTCCAATGTATGTTGATCTGGATGATGCAC‑GTAATGGACAAGCA‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATGGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCtt < 2:1427816/249‑1 (MQ=255) tGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGc > 1:1173329/1‑250 (MQ=255) cGGCTACATGGAGACTGCCACGCCGGGAGTATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCt < 1:278809/250‑1 (MQ=255) cTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGc < 1:1271806/250‑1 (MQ=255) cATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTaa > 2:180265/1‑250 (MQ=255) gagaCTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATgcg < 2:757905/250‑1 (MQ=255) gaCTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTGGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATgcggc < 2:66351/250‑1 (MQ=255) cTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTCATGCGGCGt > 1:1101073/1‑250 (MQ=255) cTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCATGGCTAATGCGGCGt > 1:927900/1‑250 (MQ=255) cACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATGCTGCGTTggg > 2:768149/1‑250 (MQ=255) aCGGCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGTATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATGCGGCGTTGGGc < 1:913471/250‑1 (MQ=255) ccGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATGCGGCGTTGGGCTGa > 2:152162/1‑250 (MQ=255) ccGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATGCGGCGTTGGGCTGa > 2:1023843/1‑250 (MQ=255) gAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATGCGGCGTTGGGCTGATccc > 1:556602/1‑250 (MQ=255) | CGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATGTTTGTTGATCTGGATGATGCAC‑GTAATGGTCCAGCC‑GTTCAGGATTTGTGGATGTTGCTC‑AATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTATTATCTTGCCTGGCTAATGCGGCGTTGGGCTGATCCC > NZ_CP009273/4036145‑4036638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |