| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,145,111 | 0 | C | A | 31.4% | 117.9 / 18.2 | 51 | A149E (GCA→GAA) | yegJ | DUF2314 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base C (15/20); new base A (1/15); total (16/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.83e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTG‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAG > NZ_CP009273/2144863‑2145358 | gATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCa < 1:49689/250‑1 (MQ=255) tAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCaaa < 1:99858/250‑1 (MQ=255) aTCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGt < 1:712957/250‑1 (MQ=255) agaaCCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAAt < 1:1340998/250‑1 (MQ=255) aaCCGAGCAGTTCTGGCTTACGGATGTCACATATTCTAACGGCATGTTTATTGGCGTAGTCAGCGATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATAATTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTATATTGGTCACCTGTCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCACTAATcg < 2:686885/250‑2 (MQ=255) tttCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTtata < 1:119151/250‑1 (MQ=255) tCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATAGTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTatat < 1:1172093/249‑1 (MQ=255) aCGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGtt < 2:99539/249‑1 (MQ=255) aCGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGt < 1:276992/248‑1 (MQ=255) cgtaTGTCACTTAATCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGGAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATGCCATTGATCCTTTATTAGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑a < 1:1311217/247‑1 (MQ=255) tCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTgg < 1:1271445/250‑1 (MQ=255) aCTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGc < 2:1009641/249‑1 (MQ=255) aCTTATTCTAACGGCATGTTTATGGGCGGAATCAGCAATGACCCTGGTATTGTGACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGc < 2:365622/249‑1 (MQ=255) aTTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑t < 1:584775/248‑1 (MQ=255) ttCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTg < 1:495709/249‑1 (MQ=255) aCGGCAGGGTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTAGAAAAACAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTGTCCAAAAGAAGAA‑TCCGACGA‑AC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAAttg < 2:944187/249‑1 (MQ=255) cGGCATGTTTAGTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAAttg‑tt < 2:1000307/250‑1 (MQ=255) ggCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAAttg‑ttg < 1:190010/250‑1 (MQ=255) tttATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGATTTTCCAATGATTCTTTTTTTGTGCCCCCTCCCAAAAAAGAA‑AACGACGAGGC‑AAGGAGAAAAAATATTTGCCTAACTACACGTT‑TATTTATTTTTT‑AAAATGGCGG‑GTGAGatg‑ttttttttt > 2:64586/1‑243 (MQ=255) gCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTG‑TTGTCTTCAACCGcc < 2:947108/249‑1 (MQ=255) gTATTGTAACAAACGGAGAGTATGGCCAGGAGTGAAAAAACAAGAAAGAAGATATTACAGACTGGTTGTAGACGCGGGGAAAAAAAATTTACGGCGTTTATACCATTGTTCTTTTATGGCCCCCCTACAAAAAAGAAGAA‑GCCGAGGA‑GA‑TAAGAGAAAAATTGGTTCGTTAACCAGCTTTTATTTTTTTTTTTT‑AACCGGGCGT‑TTAATTTT‑TTGTCTCAAACCGCCATGAGAAACTCACTCTGCCcac < 2:88057/250‑1 (MQ=255) cAAACGTAGAATATGGCAAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGTATGTATACGCGGGGGAATAAAATTTACGGCGTTTATACCATTGATCCTTTATTGGTCCCCTATCAAAAAGAAGAG‑GCCAACGA‑GC‑TAAGACAAAAATTAGTCCGCAAATCAGCCGTTATATTTATTGTTA‑AACCGGGCGT‑TTGAATTG‑TTGTCTTAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt < 1:428718/250‑1 (MQ=255) aaagggcagggAGTGAAAAATCAAAAAAAAAAATTTTTCAGTCTGGATGTATACGCGCGGGAAAAAAATTACCGGCGTTTATCCCATTAATCCTTTATTGGTCCCCTACCAAAAAGAAGAA‑GCCGACGA‑TC‑AAAGAGAAAAATTATTTCCCTAATCACCCTTTATATTTATTTTTT‑AACCGGGCGG‑TTGAATTT‑TTTTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGttt < 1:60609/241‑1 (MQ=255) gAGTGAAAAAACAAAAAAAAAGTAATTTCAGATGGGTTGTATCCGCGCGGGGATAAAATTTACGGCGTTTATCCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGAGGA‑GC‑AAAGAGCAAAATTATTTCGCTAATCAGCCTTTATATTTTTTTTTT‑AACCTGGCGT‑TTGAATTT‑TTGTCTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatcatc < 1:87482/250‑1 (MQ=255) gTGAAAAAAAAAAAAAGAAATTTTTTCAGCCTGGATTTATCCGCGCGGGGATAAATTTACCGGCGGTTATACCTTTGATCCTTTATTGGTCACTTATCAAAAAAAAGAA‑GCCGACGA‑GA‑TAAGAGAAAAATTAGTCCGTTAATCAGCCGTAATATTTTTTTTTA‑AAACGGGCGT‑TTGATTTT‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCg < 1:436690/250‑1 (MQ=255) attttgaagagTGGTTGTATACGCGGGGGAAAAAAATTTCCGGGGGTTATACCATTTATCCTTTATTGGTCACCTATCAAAAAGAAGAA‑GCCGAGGA‑GC‑TAAGAGAAAATTTTGTTCGATAAGCAGCCTTTATATTTATTTTTT‑AAACGGGGGG‑TTGATTTG‑TTTTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCggg < 1:1121168/243‑1 (MQ=255) tataCGCGGGGGAAAAAAATTGACGGGGGTATTACTTTTGTTCTTTTAGGGGTCCACAATCAAAAAGAAGAA‑GCCTACAA‑GC‑AAGGAGAAAATTTTGTTCACAAATCATCTGTTATATTT‑TTGTTTAAAACGGGGGG‑TTGATTGG‑TTTTCTCCACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCtt < 2:710426/250‑1 (MQ=255) gggaaaaaaaTTTAGGGGGTTTATACCTTTGTTCTTTTATTGGACA‑CTACCCAAAAAAAAAACGCAGAGAA‑GC‑AAAAAAAAAATTTTTTTCCCAAACCCCCTTTTATTTTTTTTTTTT‑AACCGGGGTG‑TTGATTTG‑TTTTCTCAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTc < 2:27051/244‑1 (MQ=255) aaaaatTTTACGGCGTTTATCCATTTGATCCTTTATTGGTCCCATACCAAAAAGAAGAA‑GCCGACAA‑GC‑AAAGAGAAAAATTAGTCCTCTATTCAGCCTTTATTTTTTTTGTTA‑AAACGGGCGT‑TTGAATTT‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGt < 1:812939/248‑1 (MQ=255) aaaaTTACCGGCGTTATTACTATTGTTCTTTTA‑TGGTCCCCTAACCAAAAGAAAAA‑AGCCACGA‑GCAAAAAAAAAAAATTATTTC‑CTAAACCACCTTTTTTTTTTATTTTT‑AAAACGGGGG‑TTGAAATGTTTGTTTCAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaa < 2:597786/250‑1 (MQ=255) aaaTTTCCGGCGTTTTTACATTTATTCTTTTTTTGTTCACCTACCAAAAAAAAGAA‑CCCGACGA‑GA‑TAAGAGAAAAATTATTTCTCTAATCAGCCTTTAT‑TTTTTTTTTT‑AAACCGGGGGTTTAAATTT‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaat < 1:972112/250‑1 (MQ=255) gggggtttaacccATTGATCTTTTA‑TGGGCACCTTACAAAAAAAAAAAGGCCGACGA‑GT‑AAAGAGAAAAATTAGTTCGCAAATCAGCCTTTATTTTTTTTTTTA‑AAACGGGGGG‑TTAATTTG‑TTGTCTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCg < 1:805841/238‑1 (MQ=255) ttATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTG‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATAAATCGAgttgtt > 1:68123/1‑250 (MQ=255) tataCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑CTTAATTG‑TTGTTTTCCAACGCCATGAGAAACACACTTTGGCCACAGCGCCACTTGCAAAGATTTAACATCATTCCCACGCC‑C‑CGTATCCGACGGGCCGGCACAAAACTTCTTTAACAATTCCTGGAATCAATCGCGTTGTTc > 2:845009/1‑250 (MQ=255) taCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGGATTT‑TTTTCTTTAACCGCCATGAGAAACTCACTCTGCCCCCCGCCCCCGTGCCAACGTTTTATCATTATCCGCTCCCC‑C‑GCTTCCCGCCCGGCCGGACACAAACTGCTTTTACAACTCATGTAAAAAACAGAGTTGTTCCt > 2:726021/1‑250 (MQ=255) cATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTTAATTT‑TTTTCTTTCACCGCCCTGAGAAAATCACTCTTCCCCCCGCGCCCGTGCCCACGTTTTTTCATCATCCGTTCGCTCC‑TTTTCCCCCCGGGCCGG‑CCAAAACAGCTTTTACAATTTAGGCAATAAATCCAGTTTTTTCTGCg > 2:948947/1‑250 (MQ=255) tttATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTT‑TTTTCTTTACACCCCATGAGGAAATCACTCTGCCCACAACGCCCGAGTCAACGTTTTTTCATTATTCGCACCCC‑CGGTTTACC‑CCGCGCTGGACAAAAAATTCTTTAACAAATTCGGTTATAAATCAAGTTTATGCTGCGGTTCTgccc > 2:976979/1‑249 (MQ=255) tttttgtcccccTATCAAAAAAAGAAA‑GCCGACGA‑AA‑AAAGAGAAAATTTGTTTCGATAACCAGCTTTTATTTTTTTTTTTA‑AACCGGGCGG‑TTAATTTG‑TTGTCTACACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTgcc < 1:1414894/238‑1 (MQ=255) ttgtcccccTACCAAAAAAAAGAA‑GCCGACGA‑GC‑AAAGAAAAAAATTATTTCGCTAATCACCCTTTATTTTTTTTTTTA‑AACCTGGCGT‑TTAATTTG‑TTGTCTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCa < 1:242030/242‑1 (MQ=255) tGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑GTGGATTG‑TTTTTTTCCACCCCCATGAGAAACTACCTCTGCCCACCGCGCCAGTGCCAACGGTTTATCATCATCCGTAGCCC‑C‑CTGTAACGCCGGGCAGGGCAAAAACTCTTTTTACAAATCAAGGAAAAAAACCAGACTTTCCTGCGTTGCCGCCGCCact > 2:367418/1‑248 (MQ=255) cACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGTAATG‑TTTTTTTCAACCACCCTGAGAAACTCACCCTTCCCCCACCGCCATGGCCCACGTTTTTTCATCACCCCTACCCC‑C‑CTTTACCCCCCGGCTGGAGACAAAAATCTCTATAAATTTAGGGATTATATCACGTTTTTCCTTCGTtgctgcgccgctgctat > 2:1394077/1‑239 (MQ=255) catATCAAAAAGAGTAA‑GCAGAAGA‑GT‑AAAGAGAAAAATTAGTCCTCTAATAAGCGTTTATTTTTTTTGTTA‑AATCGGGGGG‑TTGAATTG‑TTTTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTg < 1:159316/248‑1 (MQ=255) aTCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTG‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTTCCCCCCGGCTGGACAAAAACTGCTTTAACAATTCCGGTAATAAAACGAGTTGTTCCTGCGTTTCTGCCCCCCGTCCATTTaa > 2:312198/1‑249 (MQ=255) cAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCAGTTATATTTATTGTTT‑AAACTGGTGG‑TTGAATTG‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCCCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAATAACTCCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTACGTTGTAAAAc > 2:1419059/1‑250 (MQ=255) agaa‑gCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTT‑TTTTCTTTAACCGCCCTGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCCACGTTTTATCATCATTCCTACGCC‑C‑GTTTACCGCCCGGCCGGGCCAAAAATGCTTTAACAATTCACGTCATAAATCCAGTTGTTCCTGCGTTGCGTCCCCCCGGCCCTTTAAAAACggggga > 2:1403165/1‑247 (MQ=255) a‑gCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTT‑TTTTCTTCCACCGCCCTGAGAAAATCACTCTGCCCCCAGCGCCCGTGCCCACGTTTTTTCATCCTCCGTACCCT‑C‑GTTTTCCGCCGGGCCGGACAAAAACTGCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTTCGTTTCTGCCGCCCGTCCCTTGAAAAACGGGGTaaag > 2:1057409/1‑249 (MQ=255) caaaaga‑GC‑AAAGAAAAAATTTATTTCGTAAACCAGCTTTTATTTTTGTTGTTA‑AAGCTGGCGG‑ATAATTTG‑TTGTTTTAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaagaaa < 1:225334/245‑1 (MQ=255) gacga‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTG‑TTGTTTTCAACCGCCATGAGAAACTCACTCTTCCCCCAGCGCCCGTGCCCACGTTTTTTCATCATCCGTACGCC‑C‑GTTTACCGCCCGGCTGGGCCAAAACTGCTTTAACAATTCAGGGAATAAATCGAGTTTGTCCTGCGGTGCTGGCCCCAGTCCATTTGAAAACGGGGGAAAGAAAgg > 2:647918/1‑250 (MQ=255) a‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTG‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTAACGCCGGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGGAAAGAAAGGcaca > 1:1251812/1‑250 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTTAATTT‑TTTTCTTCCACCGCCATGAGAAAATCACTCTGCCCACAGCGCCCGGGCCAACGCTTTTTCATAATCCCTACGCT‑C‑GTTTACCGCCCGGCTGGACAAAAAATGCTTTAACAATTCAAGTAATAAATCGAGTTGTTCCTTCGATGCTGCCCCCAGTCCATTGACAAACGGGGTAAAAAAAGGcaactcaag > 2:1027579/1‑240 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTG‑TTGTCTTTAACCGCCCTGAGAAACTCACTCTGCCCACAGCGCCCGTGCCAACGTTTTTTCATCATCCGCACGCT‑C‑GTTTACCGCCGGGCTGGCCAAAAACTGCTTTAAAAATTTAGGTAATAAATCGAGTTTTTTCTGCGTTGCTGCCGCCCGTCCCTTGAAAAAAGGGGTAAAGAAAGGCACATaaggag > 1:11924/1‑249 (MQ=255) | GATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAACTGGCGG‑TTGAATTG‑TTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAG > NZ_CP009273/2144863‑2145358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |