Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092732,145,1670GT35.3% 38.5 / 17.6 51intergenic (+40/+25)yegJ/pphCDUF2314 domain‑containing protein/protein‑serine/threonine phosphatase PphC
Reads supporting (aligned to +/- strand):  ref base G (18/15);  new base T (9/9);  total (27/24)
Fisher's exact test for biased strand distribution p-value = 7.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.41e-02
Rejected as consensus: Frequency below/above cutoff threshold.

ACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACTT  >  NZ_CP009273/2144919‑2145415
                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                               
aCGGCAGGGTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTAGAAAAACAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTGTCCAAAAGAAGAA‑TCCGACGA‑AC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑ttg                                                                                                                                                                                                                                                                 <  2:944187/249‑1 (MQ=255)
 cGGCATGTTTAGTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑ttg‑tt                                                                                                                                                                                                                                                              <  2:1000307/250‑1 (MQ=255)
  ggCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑ttg‑ttg                                                                                                                                                                                                                                                             <  1:190010/250‑1 (MQ=255)
        tttATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGATTTTCCAATGATTCTTTTTTTGTGCCCCCTCCCAAAAAAGAA‑AACGACGAGGC‑AAGGAGAAAAAATATTTGCCTAACTACACGTT‑TATTTATTTTTT‑AAA‑AT‑GGCGG‑GTGAG‑atg‑ttttttttt                                                                                                                                                                                                                                                       >  2:64586/1‑243 (MQ=255)
               gCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGcc                                                                                                                                                                                                                                               <  2:947108/249‑1 (MQ=255)
                                    gTATTGTAACAAACGGAGAGTATGGCCAGGAGTGAAAAAACAAGAAAGAAGATATTACAGACTGGTTGTAGACGCGGGGAAAAAAAATTTACGGCGTTTATACCATTGTTCTTTTATGGCCCCCCTACAAAAAAGAAGAA‑GCCGAGGA‑GA‑TAAGAGAAAAATTGGTTCGTTAACCAGCTTTTATTTTTTTTTTTT‑AAC‑CG‑GGCGT‑TTAAT‑TTT‑TTG‑TCTCAAA‑CCGCCATGAGAAACTCACTCTGCCcac                                                                                                                                                                                                                         <  2:88057/250‑1 (MQ=255)
                                             cAAACGTAGAATATGGCAAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGTATGTATACGCGGGGGAATAAAATTTACGGCGTTTATACCATTGATCCTTTATTGGTCCCCTATCAAAAAGAAGAG‑GCCAACGA‑GC‑TAAGACAAAAATTAGTCCGCAAATCAGCCGTTATATTTATTGTTA‑AAC‑CG‑GGCGT‑TTGAA‑TTG‑TTG‑TCTTAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt                                                                                                                                                                                                                <  1:428718/250‑1 (MQ=255)
                                                       aaagggcagggAGTGAAAAATCAAAAAAAAAAATTTTTCAGTCTGGATGTATACGCGCGGGAAAAAAATTACCGGCGTTTATCCCATTAATCCTTTATTGGTCCCCTACCAAAAAGAAGAA‑GCCGACGA‑TC‑AAAGAGAAAAATTATTTCCCTAATCACCCTTTATATTTATTTTTT‑AAC‑CG‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGttt                                                                                                                                                                                                      <  1:60609/241‑1 (MQ=255)
                                                                 gAGTGAAAAAACAAAAAAAAAGTAATTTCAGATGGGTTGTATCCGCGCGGGGATAAAATTTACGGCGTTTATCCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGAGGA‑GC‑AAAGAGCAAAATTATTTCGCTAATCAGCCTTTATATTTTTTTTTT‑AAC‑CT‑GGCGT‑TTGAA‑TTT‑TTG‑TCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatcatc                                                                                                                                                                                            <  1:87482/250‑1 (MQ=255)
                                                                   gTGAAAAAAAAAAAAAGAAATTTTTTCAGCCTGGATTTATCCGCGCGGGGATAAATTTACCGGCGGTTATACCTTTGATCCTTTATTGGTCACTTATCAAAAAAAAGAA‑GCCGACGA‑GA‑TAAGAGAAAAATTAGTCCGTTAATCAGCCGTAATATTTTTTTTTA‑AAA‑CG‑GGCGT‑TTGAT‑TTT‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCg                                                                                                                                                                                          <  1:436690/250‑1 (MQ=255)
                                                                                       attttgaagagTGGTTGTATACGCGGGGGAAAAAAATTTCCGGGGGTTATACCATTTATCCTTTATTGGTCACCTATCAAAAAGAAGAA‑GCCGAGGA‑GC‑TAAGAGAAAATTTTGTTCGATAAGCAGCCTTTATATTTATTTTTT‑AAA‑CG‑GGGGG‑TTGAT‑TTG‑TTT‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCggg                                                                                                                                                                    <  1:1121168/243‑1 (MQ=255)
                                                                                                        tataCGCGGGGGAAAAAAATTGACGGGGGTATTACTTTTGTTCTTTTAGGGGTCCACAATCAAAAAGAAGAA‑GCCTACAA‑GC‑AAGGAGAAAATTTTGTTCACAAATCATCTGTTATATTT‑TTGTTTAAAA‑CG‑GGGGG‑TTGAT‑TGG‑TTT‑TCTCCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCtt                                                                                                                                                  <  2:710426/250‑1 (MQ=255)
                                                                                                                 gggaaaaaaaTTTAGGGGGTTTATACCTTTGTTCTTTTATTGGACA‑CTACCCAAAAAAAAAACGCAGAGAA‑GC‑AAAAAAAAAATTTTTTTCCCAAACCCCCTTTTATTTTTTTTTTTT‑AAC‑CG‑GGGTG‑TTGAT‑TTG‑TTT‑TCTCAAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTc                                                                                                                                         <  2:27051/244‑1 (MQ=255)
                                                                                                                     aaaaatTTTACGGCGTTTATCCATTTGATCCTTTATTGGTCCCATACCAAAAAGAAGAA‑GCCGACAA‑GC‑AAAGAGAAAAATTAGTCCTCTATTCAGCCTTTATTTTTTTTGTTA‑AAA‑CG‑GGCGT‑TTGAA‑TTT‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGt                                                                                                                                     <  1:812939/248‑1 (MQ=255)
                                                                                                                       aaaaTTACCGGCGTTATTACTATTGTTCTTTTA‑TGGTCCCCTAACCAAAAGAAAAA‑AGCCACGA‑GCAAAAAAAAAAAATTATTTC‑CTAAACCACCTTTTTTTTTTATTTTT‑AAA‑AC‑GGGGG‑TTGAA‑ATGTTTG‑TTTCAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGtaa                                                                                                                                   <  2:597786/250‑1 (MQ=255)
                                                                                                                        aaaTTTCCGGCGTTTTTACATTTATTCTTTTTTTGTTCACCTACCAAAAAAAAGAA‑CCCGACGA‑GA‑TAAGAGAAAAATTATTTCTCTAATCAGCCTTTAT‑TTTTTTTTTT‑AAA‑CC‑GGGGGTTTAAA‑TTT‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGtaat                                                                                                                                  <  1:972112/250‑1 (MQ=255)
                                                                                                                               gggggtttaacccATTGATCTTTTA‑TGGGCACCTTACAAAAAAAAAAAGGCCGACGA‑GT‑AAAGAGAAAAATTAGTTCGCAAATCAGCCTTTATTTTTTTTTTTA‑AAA‑CG‑GGGGG‑TTAAT‑TTG‑TTG‑TCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCg                                                                                                                            <  1:805841/238‑1 (MQ=255)
                                                                                                                                     ttATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAAAT‑GCTTTAACAATTCAGGTAATAAATCGAgttgtt                                                                                                                     >  1:68123/1‑250 (MQ=255)
                                                                                                                                      tataCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑CTTAA‑TTG‑TTG‑TTTTCCA‑ACGCCATGAGAAACACACTTTGGCCACAGCGCCACTTGCAAAGATTTAACATCATTCCCACGCC‑C‑CGTATCCGACGGGCCGGCACAAAACT‑TCTTTAACAATTCCTGGAATCAATCGCGTTGTTc                                                                                                                    >  2:845009/1‑250 (MQ=255)
                                                                                                                                        taCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGGA‑TTT‑TTT‑TCTTTAA‑CCGCCATGAGAAACTCACTCTGCCCCCCGCCCCCGTGCCAACGTTTTATCATTATCCGCTCCCC‑C‑GCTTCCCGCCCGGCCGGACACAAACT‑GCTTTTACAACTCATGTAAAAAACAGAGTTGTTCCt                                                                                                                  >  2:726021/1‑250 (MQ=255)
                                                                                                                                           cATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTTAA‑TTT‑TTT‑TCTTTCA‑CCGCCCTGAGAAAATCACTCTTCCCCCCGCGCCCGTGCCCACGTTTTTTCATCATCCGTTCGCTCC‑TTTTCCCCCCGGGCCGG‑CCAAAACA‑GCTTTTACAATTTAGGCAATAAATCCAGTTTTTTCTGCg                                                                                                               >  2:948947/1‑250 (MQ=255)
                                                                                                                                                    tttATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTTAC‑ACCCCATGAGGAAATCACTCTGCCCACAACGCCCGAGTCAACGTTTTTTCATTATTCGCACCCC‑CGGTTTACC‑CCGCGCTGGACAAAAAAT‑TCTTTAACAAATTCGGTTATAAATCAAGTTTATGCTGCGGTTCTgccc                                                                                                      >  2:976979/1‑249 (MQ=255)
                                                                                                                                                     tttttgtcccccTATCAAAAAAAGAAA‑GCCGACGA‑AA‑AAAGAGAAAATTTGTTTCGATAACCAGCTTTTATTTTTTTTTTTA‑AAC‑CG‑GGCGG‑TTAAT‑TTG‑TTG‑TCTACAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTgcc                                                                                                       <  1:1414894/238‑1 (MQ=255)
                                                                                                                                                        ttgtcccccTACCAAAAAAAAGAA‑GCCGACGA‑GC‑AAAGAAAAAAATTATTTCGCTAATCACCCTTTATTTTTTTTTTTA‑AAC‑CT‑GGCGT‑TTAAT‑TTG‑TTG‑TCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCa                                                                                                   <  1:242030/242‑1 (MQ=255)
                                                                                                                                                         tGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑GTGGA‑TTG‑TTT‑TTTTCCA‑CCCCCATGAGAAACTACCTCTGCCCACCGCGCCAGTGCCAACGGTTTATCATCATCCGTAGCCC‑C‑CTGTAACGCCGGGCAGGGCAAAAACT‑CTTTTTACAAATCAAGGAAAAAAACCAGACTTTCCTGCGTTGCCGCCGCCact                                                                                                 >  2:367418/1‑248 (MQ=255)
                                                                                                                                                             cACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGTA‑ATG‑TTT‑TTTTCAA‑CCACCCTGAGAAACTCACCCTTCCCCCACCGCCATGGCCCACGTTTTTTCATCACCCCTACCCC‑C‑CTTTACCCCCCGGCTGGAGACAAAAA‑TCTCTATAAATTTAGGGATTATATCACGTTTTTCCTTCGTtgctgcgccgctgctat                                                                                             >  2:1394077/1‑239 (MQ=255)
                                                                                                                                                               catATCAAAAAGAGTAA‑GCAGAAGA‑GT‑AAAGAGAAAAATTAGTCCTCTAATAAGCGTTTATTTTTTTTGTTA‑AAT‑CG‑GGGGG‑TTGAA‑TTG‑TTT‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTg                                                                                           <  1:159316/248‑1 (MQ=255)
                                                                                                                                                                  aTCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTTCCCCCCGGCTGGACAAAAACT‑GCTTTAACAATTCCGGTAATAAAACGAGTTGTTCCTGCGTTTCTGCCCCCCGTCCATTTaa                                                                                         >  2:312198/1‑249 (MQ=255)
                                                                                                                                                                     cAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCAGTTATATTTATTGTTT‑AAA‑CT‑GGTGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCCCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAATAACT‑CCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTACGTTGTAAAAc                                                                                     >  2:1419059/1‑250 (MQ=255)
                                                                                                                                                                            agaa‑gCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTTAA‑CCGCCCTGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCCACGTTTTATCATCATTCCTACGCC‑C‑GTTTACCGCCCGGCCGGGCCAAAAAT‑GCTTTAACAATTCACGTCATAAATCCAGTTGTTCCTGCGTTGCGTCCCCCCGGCCCTTTAAAAACg‑gggga                                                                              >  2:1403165/1‑247 (MQ=255)
                                                                                                                                                                               a‑gCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTCCA‑CCGCCCTGAGAAAATCACTCTGCCCCCAGCGCCCGTGCCCACGTTTTTTCATCCTCCGTACCCT‑C‑GTTTTCCGCCGGGCCGGACAAAAACT‑GCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTTCGTTTCTGCCGCCCGTCCCTTGAAAAACG‑GGGTaaag                                                                           >  2:1057409/1‑249 (MQ=255)
                                                                                                                                                                                  caaaaga‑GC‑AAAGAAAAAATTTATTTCGTAAACCAGCTTTTATTTTTGTTGTTA‑AAG‑CT‑GGCGG‑ATAAT‑TTG‑TTG‑TTTTAAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTaaagaaa                                                                        <  1:225334/245‑1 (MQ=255)
                                                                                                                                                                                    gacga‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TTTTCAA‑CCGCCATGAGAAACTCACTCTTCCCCCAGCGCCCGTGCCCACGTTTTTTCATCATCCGTACGCC‑C‑GTTTACCGCCCGGCTGGGCCAAAACT‑GCTTTAACAATTCAGGGAATAAATCGAGTTTGTCCTGCGGTGCTGGCCCCAGTCCATTTGAAAACG‑GGGGAAAGAAAgg                                                                      >  2:647918/1‑250 (MQ=255)
                                                                                                                                                                                        cgagataaaacaaaaaTTATTTCCATACTCGCCCTTTATTTTTTTTTTTT‑AAC‑CT‑‑GCCG‑TTGAA‑TTT‑TTT‑TTCTCAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGca                                                                    <  1:213618/238‑1 (MQ=255)
                                                                                                                                                                                        a‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTAACGCCGGGCTGGACAAAAAAT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGGAAAGAAAGGcaca                                                                  >  1:1251812/1‑250 (MQ=255)
                                                                                                                                                                                                  gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTTAA‑TTT‑TTT‑TCTTCCA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCCGGGCCAACGCTTTTTCATAATCCCTACGCT‑C‑GTTTACCGCCCGGCTGGACAAAAAAT‑GCTTTAACAATTCAAGTAATAAATCGAGTTGTTCCTTCGATGCTGCCCCCAGTCCATTGACAAACG‑GGGTAAAAAAAGGcaactcaag                                                             >  2:1027579/1‑240 (MQ=255)
                                                                                                                                                                                                  gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTTAA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCCGTGCCAACGTTTTTTCATCATCCGCACGCT‑C‑GTTTACCGCCGGGCTGGCCAAAAACT‑GCTTTAAAAATTTAGGTAATAAATCGAGTTTTTTCTGCGTTGCTGCCGCCCGTCCCTTGAAAAAAG‑GGGTAAAGAAAGGCACATaaggag                                                           >  1:11924/1‑249 (MQ=255)
                                                                                                                                                                                                    aaaaTTAGTCCTAAAATCAGCCTTTAT‑TTTTTTTTTT‑AAA‑CG‑TGGGG‑TTGAATTTT‑TTT‑TCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAAt                                                        <  1:759070/250‑1 (MQ=255)
                                                                                                                                                                                                          aGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTCAA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAATGCCCACGATTTTTTATCATCCCTACGCA‑C‑CGTTACCGCCCGGCTGGGAAAAAACA‑GCTTTTACAATACAAGGTATAAATAGAATTGGTCCTGCGTTGCTGCCGCACCTCCATTTAAAAAAGCGGGAAAAAAAAGAAACAT‑AGGCGAAttcacc                                                   >  2:877597/1‑245 (MQ=255)
                                                                                                                                                                                                               gCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTCCA‑CCGCCCTTAGAAAATCACTCTGCCCCCAGCGCCAGTGCCCACGTTTTTTCATCATCCGTACGCC‑C‑CTTTACCGCCGGGCTGGGCAAAAAAT‑GCTTTAACAATTCTGGTAATAAATCGCGGTGTTCCTGCGTTGCTTCCGCCAGTCCCTTGAAAAACG‑GGGTAAAGAAATGGACATTAGGGACATTATCCCGCata                                             >  2:1287147/1‑250 (MQ=255)
                                                                                                                                                                                                                cTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTTAA‑ACCCCCTTAGAAACTCACTCTTCCCCCAGCGCCAGTCCCCACGGTTTTTCATCATCCCTTCGCC‑C‑CTTTTCCCCCCGGCTGGGCAAAAACT‑GCTTTAAAAAATCAAGTAATAAATTGAGTTGTTTCTGCGCTGCTGCCGCCCCTCCACTGTAAAAAA‑GGGTAAAGAAAGGCCCACAAGGAGAATTATTCACAatat                                            >  2:373855/1‑250 (MQ=255)
                                                                                                                                                                                                                 tAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGGA‑TTG‑TTG‑TCTTCAA‑CCGCCCTTAGAAAATCACTCTGCCCACCACGCCAGTGGCAACGTTTTATCACCATCCGGCCCCT‑C‑GTTTACCGCCGGGCTGGACAAAAAATGGTTTTAACATTTC‑GGGAATAAATCGAGGTGGTCCTGAGGTGCTGCCCCCCATCCCTTGTCAAAAG‑GGGTAACGAAAGGGACATTAGGAGAAttcttcaacctata                                           >  2:1291314/1‑238 (MQ=255)
                                                                                                                                                                                                                  aaTCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑GCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTATCATTATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAAAT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAAGCACATGAGGAGAATTATACAGCATAtt                                           >  1:1218881/1‑249 (MQ=255)
                                                                                                                                                                                                                   aatcatccttATTTTTTTTTGTT‑AAA‑CC‑GGGGG‑GTATA‑TTT‑TTGTTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCatat                                            <  1:1346431/240‑1 (MQ=255)
                                                                                                                                                                                                                        cttttATATTTGTTGTAA‑AAA‑CG‑GGCGG‑TTAAT‑TTG‑ATG‑‑CTAAAATCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GATTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGcc                                    <  1:535403/247‑1 (MQ=255)
                                                                                                                                                                                                                        ctgTTATTTTTTTTGTTA‑AAC‑CG‑GGGTG‑TTGAA‑TTG‑TTT‑TCTCCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAAc                                       <  1:489821/245‑1 (MQ=255)
                                                                                                                                                                                                                           ttATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTTAA‑CCGCCCTGAGAAAATCACTCTTCCCCCAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCT‑C‑GGTTTCCGCCGGGCCGGAAAAAAAAT‑GCTTTTAAAAATCAGGGAATAAAACGAGTTGTTCCCGCGGTGCTGCCGCCAGGCCCTTGAAAAAAG‑GGGGAAAGAAAAGCACATGAGGAGAAATATTCAGCATATTTTACGACAgg                                 >  2:352880/1‑249 (MQ=255)
                                                                                                                                                                                                                              tatttattGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTT‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCCCACGCT‑C‑GTTTACCGCCCGGCTGGGCAAAAACA‑TCTTTAAAAATTCAGGTAATAAAAATAGTTGTTCCTGCGGTGCTGCCGCCCGTCCATTTTAAAAAA‑GGGTAAAAAAAAGGACAAGAGGAGAAATATACACCATATTTaaaccccgtggc                              >  2:1395345/1‑240 (MQ=255)
                                                                                                                                                                                                                               atttattGTTT‑AAA‑CT‑GGCGG‑TTGGA‑TTG‑TTG‑TCTTTAA‑ACGCCATGTGAAACTCACTCTGCCCACAGGGCCAGTGGCAACGTTTTATCATTATTCGTACGCT‑C‑GTTTACCACCGGGGTGGAAAAAAACT‑GCTTTTACAATTCAGGTAATAAATCGAGGTGGTGCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGGAAAGAAAGGCACATGAGGAGGAATATCCAGCATATTTCACGCCAGTCGCt                             >  2:337760/1‑250 (MQ=255)
                                                                                                                                                                                                                                  tattGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGGCAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCCCCAGTCCATTGAAAAACG‑GGGGAAAGAAAGGCACCTGAGGAGAATTATACAGCATATTTAACGCCAGTCGCTGGa                          >  1:732379/1‑250 (MQ=255)
                                                                                                                                                                                                                                    tttttt‑AAAGCT‑GGCGT‑TTGAT‑TTG‑TTT‑TTTTAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGa                          <  1:1205193/246‑1 (MQ=255)
                                                                                                                                                                                                                                       ttt‑AAA‑CTGGGCTG‑TTAAT‑TTG‑TTT‑TCTACAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATAc                       <  1:172244/249‑1 (MQ=255)
                                                                                                                                                                                                                                            aa‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCCTTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCg                 >  2:909661/1‑250 (MQ=255)
                                                                                                                                                                                                                                                    cGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAtg           >  1:336193/1‑250 (MQ=255)
                                                                                                                                                                                                                                                     cgggttaatgtg‑ttg‑tCTTCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt            <  1:152130/240‑1 (MQ=255)
                                                                                                                                                                                                                                                            a‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAAc    >  1:437445/1‑250 (MQ=255)
                                                                                                                                                                                                                                                               tg‑ttg‑tCTTCAA‑CCGCCATGAGAAACTCATTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCGACtt  >  2:470681/1‑250 (MQ=255)
                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                               
ACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGA‑GC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACTT  >  NZ_CP009273/2144919‑2145415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑