Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092732,145,1700GT43.1% 27.2 / 18.3 51intergenic (+43/+22)yegJ/pphCDUF2314 domain‑containing protein/protein‑serine/threonine phosphatase PphC
Reads supporting (aligned to +/- strand):  ref base G (15/14);  new base T (12/10);  total (27/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACTTTGTG  >  NZ_CP009273/2144921‑2145419
                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                               
ggCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑ttg‑ttg                                                                                                                                                                                                                                                                 <  1:190010/250‑1 (MQ=255)
             gCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGcc                                                                                                                                                                                                                                                   <  2:947108/249‑1 (MQ=255)
                                  gTATTGTAACAAACGGAGAGTATGGCCAGGAGTGAAAAAACAAGAAAGAAGATATTACAGACTGGTTGTAGACGCGGGGAAAAAAAATTTACGGCGTTTATACCATTGTTCTTTTATGGCCCCCCTACAAAAAAGAAGAA‑GCCGAGGAGA‑TAAGAGAAAAATTGGTTCGTTAACCAGCTTTTATTTTTTTTTTTT‑AAC‑CG‑GGCGT‑TTAAT‑TTT‑TTG‑TCTCAAA‑CCGCCATGAGAAACTCACTCTGCCcac                                                                                                                                                                                                                             <  2:88057/250‑1 (MQ=255)
                                           cAAACGTAGAATATGGCAAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGTATGTATACGCGGGGGAATAAAATTTACGGCGTTTATACCATTGATCCTTTATTGGTCCCCTATCAAAAAGAAGAG‑GCCAACGAGC‑TAAGACAAAAATTAGTCCGCAAATCAGCCGTTATATTTATTGTTA‑AAC‑CG‑GGCGT‑TTGAA‑TTG‑TTG‑TCTTAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt                                                                                                                                                                                                                    <  1:428718/250‑1 (MQ=255)
                                                     aaagggcagggAGTGAAAAATCAAAAAAAAAAATTTTTCAGTCTGGATGTATACGCGCGGGAAAAAAATTACCGGCGTTTATCCCATTAATCCTTTATTGGTCCCCTACCAAAAAGAAGAA‑GCCGACGATC‑AAAGAGAAAAATTATTTCCCTAATCACCCTTTATATTTATTTTTT‑AAC‑CG‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGttt                                                                                                                                                                                                          <  1:60609/241‑1 (MQ=255)
                                                               gAGTGAAAAAACAAAAAAAAAGTAATTTCAGATGGGTTGTATCCGCGCGGGGATAAAATTTACGGCGTTTATCCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGAGGAGC‑AAAGAGCAAAATTATTTCGCTAATCAGCCTTTATATTTTTTTTTT‑AAC‑CT‑GGCGT‑TTGAA‑TTT‑TTG‑TCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatcatc                                                                                                                                                                                                <  1:87482/250‑1 (MQ=255)
                                                                 gTGAAAAAAAAAAAAAGAAATTTTTTCAGCCTGGATTTATCCGCGCGGGGATAAATTTACCGGCGGTTATACCTTTGATCCTTTATTGGTCACTTATCAAAAAAAAGAA‑GCCGACGAGA‑TAAGAGAAAAATTAGTCCGTTAATCAGCCGTAATATTTTTTTTTA‑AAA‑CG‑GGCGT‑TTGAT‑TTT‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCg                                                                                                                                                                                              <  1:436690/250‑1 (MQ=255)
                                                                                     attttgaagagTGGTTGTATACGCGGGGGAAAAAAATTTCCGGGGGTTATACCATTTATCCTTTATTGGTCACCTATCAAAAAGAAGAA‑GCCGAGGAGC‑TAAGAGAAAATTTTGTTCGATAAGCAGCCTTTATATTTATTTTTT‑AAA‑CG‑GGGGG‑TTGAT‑TTG‑TTT‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCggg                                                                                                                                                                        <  1:1121168/243‑1 (MQ=255)
                                                                                                      tataCGCGGGGGAAAAAAATTGACGGGGGTATTACTTTTGTTCTTTTAGGGGTCCACAATCAAAAAGAAGAA‑GCCTACAAGC‑AAGGAGAAAATTTTGTTCACAAATCATCTGTTATATTT‑TTGTTTAAAA‑CG‑GGGGG‑TTGAT‑TGG‑TTT‑TCTCCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCtt                                                                                                                                                      <  2:710426/250‑1 (MQ=255)
                                                                                                               gggaaaaaaaTTTAGGGGGTTTATACCTTTGTTCTTTTATTGGACA‑CTACCCAAAAAAAAAACGCAGAGAAGC‑AAAAAAAAAATTTTTTTCCCAAACCCCCTTTTATTTTTTTTTTTT‑AAC‑CG‑GGGTG‑TTGAT‑TTG‑TTT‑TCTCAAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTc                                                                                                                                             <  2:27051/244‑1 (MQ=255)
                                                                                                                   aaaaatTTTACGGCGTTTATCCATTTGATCCTTTATTGGTCCCATACCAAAAAGAAGAA‑GCCGACAAGC‑AAAGAGAAAAATTAGTCCTCTATTCAGCCTTTATTTTTTTTGTTA‑AAA‑CG‑GGCGT‑TTGAA‑TTT‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGt                                                                                                                                         <  1:812939/248‑1 (MQ=255)
                                                                                                                     aaaaTTACCGGCGTTATTACTATTGTTCTTTTA‑TGGTCCCCTAACCAAAAGAAAAA‑AGCCACGAGCAAAAAAAAAAAATTATTTC‑CTAAACCACCTTTTTTTTTTATTTTT‑AAA‑AC‑GGGGG‑TTGAA‑ATGTTTG‑TTTCAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGtaa                                                                                                                                       <  2:597786/250‑1 (MQ=255)
                                                                                                                      aaaTTTCCGGCGTTTTTACATTTATTCTTTTTTTGTTCACCTACCAAAAAAAAGAA‑CCCGACGAGA‑TAAGAGAAAAATTATTTCTCTAATCAGCCTTTAT‑TTTTTTTTTT‑AAA‑CC‑GGGGGTTTAAA‑TTT‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGtaat                                                                                                                                      <  1:972112/250‑1 (MQ=255)
                                                                                                                             gggggtttaacccATTGATCTTTTA‑TGGGCACCTTACAAAAAAAAAAAGGCCGACGAGT‑AAAGAGAAAAATTAGTTCGCAAATCAGCCTTTATTTTTTTTTTTA‑AAA‑CG‑GGGGG‑TTAAT‑TTG‑TTG‑TCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCg                                                                                                                                <  1:805841/238‑1 (MQ=255)
                                                                                                                                   ttATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAAAT‑GCTTTAACAATTCAGGTAATAAATCGAgttgtt                                                                                                                         >  1:68123/1‑250 (MQ=255)
                                                                                                                                    tataCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑CTTAA‑TTG‑TTG‑TTTTCCA‑ACGCCATGAGAAACACACTTTGGCCACAGCGCCACTTGCAAAGATTTAACATCATTCCCACGCC‑C‑CGTATCCGACGGGCCGGCACAAAACT‑TCTTTAACAATTCCTGGAATCAATCGCGTTGTTc                                                                                                                        >  2:845009/1‑250 (MQ=255)
                                                                                                                                      taCCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGGA‑TTT‑TTT‑TCTTTAA‑CCGCCATGAGAAACTCACTCTGCCCCCCGCCCCCGTGCCAACGTTTTATCATTATCCGCTCCCC‑C‑GCTTCCCGCCCGGCCGGACACAAACT‑GCTTTTACAACTCATGTAAAAAACAGAGTTGTTCCt                                                                                                                      >  2:726021/1‑250 (MQ=255)
                                                                                                                                         cATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTTAA‑TTT‑TTT‑TCTTTCA‑CCGCCCTGAGAAAATCACTCTTCCCCCCGCGCCCGTGCCCACGTTTTTTCATCATCCGTTCGCTCC‑TTTTCCCCCCGGGCCGG‑CCAAAACA‑GCTTTTACAATTTAGGCAATAAATCCAGTTTTTTCTGCg                                                                                                                   >  2:948947/1‑250 (MQ=255)
                                                                                                                                                  tttATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTTAC‑ACCCCATGAGGAAATCACTCTGCCCACAACGCCCGAGTCAACGTTTTTTCATTATTCGCACCCC‑CGGTTTACC‑CCGCGCTGGACAAAAAAT‑TCTTTAACAAATTCGGTTATAAATCAAGTTTATGCTGCGGTTCTgccc                                                                                                          >  2:976979/1‑249 (MQ=255)
                                                                                                                                                   tttttgtcccccTATCAAAAAAAGAAA‑GCCGACGAAA‑AAAGAGAAAATTTGTTTCGATAACCAGCTTTTATTTTTTTTTTTA‑AAC‑CG‑GGCGG‑TTAAT‑TTG‑TTG‑TCTACAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTgcc                                                                                                           <  1:1414894/238‑1 (MQ=255)
                                                                                                                                                      ttgtcccccTACCAAAAAAAAGAA‑GCCGACGAGC‑AAAGAAAAAAATTATTTCGCTAATCACCCTTTATTTTTTTTTTTA‑AAC‑CT‑GGCGT‑TTAAT‑TTG‑TTG‑TCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCa                                                                                                       <  1:242030/242‑1 (MQ=255)
                                                                                                                                                       tGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑GTGGA‑TTG‑TTT‑TTTTCCA‑CCCCCATGAGAAACTACCTCTGCCCACCGCGCCAGTGCCAACGGTTTATCATCATCCGTAGCCC‑C‑CTGTAACGCCGGGCAGGGCAAAAACT‑CTTTTTACAAATCAAGGAAAAAAACCAGACTTTCCTGCGTTGCCGCCGCCact                                                                                                     >  2:367418/1‑248 (MQ=255)
                                                                                                                                                           cACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGTA‑ATG‑TTT‑TTTTCAA‑CCACCCTGAGAAACTCACCCTTCCCCCACCGCCATGGCCCACGTTTTTTCATCACCCCTACCCC‑C‑CTTTACCCCCCGGCTGGAGACAAAAA‑TCTCTATAAATTTAGGGATTATATCACGTTTTTCCTTCGTtgctgcgccgctgctat                                                                                                 >  2:1394077/1‑239 (MQ=255)
                                                                                                                                                             catATCAAAAAGAGTAA‑GCAGAAGAGT‑AAAGAGAAAAATTAGTCCTCTAATAAGCGTTTATTTTTTTTGTTA‑AAT‑CG‑GGGGG‑TTGAA‑TTG‑TTT‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTg                                                                                               <  1:159316/248‑1 (MQ=255)
                                                                                                                                                                aTCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTTCCCCCCGGCTGGACAAAAACT‑GCTTTAACAATTCCGGTAATAAAACGAGTTGTTCCTGCGTTTCTGCCCCCCGTCCATTTaa                                                                                             >  2:312198/1‑249 (MQ=255)
                                                                                                                                                                   cAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCAGTTATATTTATTGTTT‑AAA‑CT‑GGTGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCCCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAATAACT‑CCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTACGTTGTAAAAc                                                                                         >  2:1419059/1‑250 (MQ=255)
                                                                                                                                                                          agaa‑gCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTTAA‑CCGCCCTGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCCACGTTTTATCATCATTCCTACGCC‑C‑GTTTACCGCCCGGCCGGGCCAAAAAT‑GCTTTAACAATTCACGTCATAAATCCAGTTGTTCCTGCGTTGCGTCCCCCCGGCCCTTTAAAAACg‑gggga                                                                                  >  2:1403165/1‑247 (MQ=255)
                                                                                                                                                                             a‑gCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTCCA‑CCGCCCTGAGAAAATCACTCTGCCCCCAGCGCCCGTGCCCACGTTTTTTCATCCTCCGTACCCT‑C‑GTTTTCCGCCGGGCCGGACAAAAACT‑GCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTTCGTTTCTGCCGCCCGTCCCTTGAAAAACG‑GGGTaaag                                                                               >  2:1057409/1‑249 (MQ=255)
                                                                                                                                                                                caaaagaGC‑AAAGAAAAAATTTATTTCGTAAACCAGCTTTTATTTTTGTTGTTA‑AAG‑CT‑GGCGG‑ATAAT‑TTG‑TTG‑TTTTAAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTaaagaaa                                                                            <  1:225334/245‑1 (MQ=255)
                                                                                                                                                                                  gacgaGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TTTTCAA‑CCGCCATGAGAAACTCACTCTTCCCCCAGCGCCCGTGCCCACGTTTTTTCATCATCCGTACGCC‑C‑GTTTACCGCCCGGCTGGGCCAAAACT‑GCTTTAACAATTCAGGGAATAAATCGAGTTTGTCCTGCGGTGCTGGCCCCAGTCCATTTGAAAACG‑GGGGAAAGAAAgg                                                                          >  2:647918/1‑250 (MQ=255)
                                                                                                                                                                                     cgagataaaacaaaaaTTATTTCCATACTCGCCCTTTATTTTTTTTTTTT‑AAC‑CT‑‑GCCG‑TTGAA‑TTT‑TTT‑TTCTCAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGca                                                                        <  1:213618/238‑1 (MQ=255)
                                                                                                                                                                                      aGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTAACGCCGGGCTGGACAAAAAAT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGGAAAGAAAGGcaca                                                                      >  1:1251812/1‑250 (MQ=255)
                                                                                                                                                                                               gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTTAA‑TTT‑TTT‑TCTTCCA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCCGGGCCAACGCTTTTTCATAATCCCTACGCT‑C‑GTTTACCGCCCGGCTGGACAAAAAAT‑GCTTTAACAATTCAAGTAATAAATCGAGTTGTTCCTTCGATGCTGCCCCCAGTCCATTGACAAACG‑GGGTAAAAAAAGGcaactcaag                                                                 >  2:1027579/1‑240 (MQ=255)
                                                                                                                                                                                               gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTTAA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCCGTGCCAACGTTTTTTCATCATCCGCACGCT‑C‑GTTTACCGCCGGGCTGGCCAAAAACT‑GCTTTAAAAATTTAGGTAATAAATCGAGTTTTTTCTGCGTTGCTGCCGCCCGTCCCTTGAAAAAAG‑GGGTAAAGAAAGGCACATaaggag                                                               >  1:11924/1‑249 (MQ=255)
                                                                                                                                                                                                 aaaaTTAGTCCTAAAATCAGCCTTTAT‑TTTTTTTTTT‑AAA‑CG‑TGGGG‑TTGAATTTT‑TTT‑TCTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAAt                                                            <  1:759070/250‑1 (MQ=255)
                                                                                                                                                                                                       aGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTCAA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAATGCCCACGATTTTTTATCATCCCTACGCA‑C‑CGTTACCGCCCGGCTGGGAAAAAACA‑GCTTTTACAATACAAGGTATAAATAGAATTGGTCCTGCGTTGCTGCCGCACCTCCATTTAAAAAAGCGGGAAAAAAAAGAAACAT‑AGGCGAAttcacc                                                       >  2:877597/1‑245 (MQ=255)
                                                                                                                                                                                                            gCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTCCA‑CCGCCCTTAGAAAATCACTCTGCCCCCAGCGCCAGTGCCCACGTTTTTTCATCATCCGTACGCC‑C‑CTTTACCGCCGGGCTGGGCAAAAAAT‑GCTTTAACAATTCTGGTAATAAATCGCGGTGTTCCTGCGTTGCTTCCGCCAGTCCCTTGAAAAACG‑GGGTAAAGAAATGGACATTAGGGACATTATCCCGCata                                                 >  2:1287147/1‑250 (MQ=255)
                                                                                                                                                                                                             cTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTT‑TTT‑TCTTTAA‑ACCCCCTTAGAAACTCACTCTTCCCCCAGCGCCAGTCCCCACGGTTTTTCATCATCCCTTCGCC‑C‑CTTTTCCCCCCGGCTGGGCAAAAACT‑GCTTTAAAAAATCAAGTAATAAATTGAGTTGTTTCTGCGCTGCTGCCGCCCCTCCACTGTAAAAAA‑GGGTAAAGAAAGGCCCACAAGGAGAATTATTCACAatat                                                >  2:373855/1‑250 (MQ=255)
                                                                                                                                                                                                              tAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGGA‑TTG‑TTG‑TCTTCAA‑CCGCCCTTAGAAAATCACTCTGCCCACCACGCCAGTGGCAACGTTTTATCACCATCCGGCCCCT‑C‑GTTTACCGCCGGGCTGGACAAAAAATGGTTTTAACATTTC‑GGGAATAAATCGAGGTGGTCCTGAGGTGCTGCCCCCCATCCCTTGTCAAAAG‑GGGTAACGAAAGGGACATTAGGAGAAttcttcaacctata                                               >  2:1291314/1‑238 (MQ=255)
                                                                                                                                                                                                               aaTCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑GCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTATCATTATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAAAT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAAGCACATGAGGAGAATTATACAGCATAtt                                               >  1:1218881/1‑249 (MQ=255)
                                                                                                                                                                                                                aatcatccttATTTTTTTTTGTT‑AAA‑CC‑GGGGG‑GTATA‑TTT‑TTGTTCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCatat                                                <  1:1346431/240‑1 (MQ=255)
                                                                                                                                                                                                                     cttttATATTTGTTGTAA‑AAA‑CG‑GGCGG‑TTAAT‑TTG‑ATG‑‑CTAAAATCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GATTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGcc                                        <  1:535403/247‑1 (MQ=255)
                                                                                                                                                                                                                     ctgTTATTTTTTTTGTTA‑AAC‑CG‑GGGTG‑TTGAA‑TTG‑TTT‑TCTCCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAAc                                           <  1:489821/245‑1 (MQ=255)
                                                                                                                                                                                                                        ttATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTTAA‑CCGCCCTGAGAAAATCACTCTTCCCCCAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCT‑C‑GGTTTCCGCCGGGCCGGAAAAAAAAT‑GCTTTTAAAAATCAGGGAATAAAACGAGTTGTTCCCGCGGTGCTGCCGCCAGGCCCTTGAAAAAAG‑GGGGAAAGAAAAGCACATGAGGAGAAATATTCAGCATATTTTACGACAgg                                     >  2:352880/1‑249 (MQ=255)
                                                                                                                                                                                                                           tatttattGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTT‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCCCACGCT‑C‑GTTTACCGCCCGGCTGGGCAAAAACA‑TCTTTAAAAATTCAGGTAATAAAAATAGTTGTTCCTGCGGTGCTGCCGCCCGTCCATTTTAAAAAA‑GGGTAAAAAAAAGGACAAGAGGAGAAATATACACCATATTTaaaccccgtggc                                  >  2:1395345/1‑240 (MQ=255)
                                                                                                                                                                                                                            atttattGTTT‑AAA‑CT‑GGCGG‑TTGGA‑TTG‑TTG‑TCTTTAA‑ACGCCATGTGAAACTCACTCTGCCCACAGGGCCAGTGGCAACGTTTTATCATTATTCGTACGCT‑C‑GTTTACCACCGGGGTGGAAAAAAACT‑GCTTTTACAATTCAGGTAATAAATCGAGGTGGTGCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGGAAAGAAAGGCACATGAGGAGGAATATCCAGCATATTTCACGCCAGTCGCt                                 >  2:337760/1‑250 (MQ=255)
                                                                                                                                                                                                                               tattGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGGCAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCCCCAGTCCATTGAAAAACG‑GGGGAAAGAAAGGCACCTGAGGAGAATTATACAGCATATTTAACGCCAGTCGCTGGa                              >  1:732379/1‑250 (MQ=255)
                                                                                                                                                                                                                                 tttttt‑AAAGCT‑GGCGT‑TTGAT‑TTG‑TTT‑TTTTAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGa                              <  1:1205193/246‑1 (MQ=255)
                                                                                                                                                                                                                                    ttt‑AAA‑CTGGGCTG‑TTAAT‑TTG‑TTT‑TCTACAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATAc                           <  1:172244/249‑1 (MQ=255)
                                                                                                                                                                                                                                         aa‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCCTTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCg                     >  2:909661/1‑250 (MQ=255)
                                                                                                                                                                                                                                                 cGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAtg               >  1:336193/1‑250 (MQ=255)
                                                                                                                                                                                                                                                  cgggttaatgtg‑ttg‑tCTTCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt                <  1:152130/240‑1 (MQ=255)
                                                                                                                                                                                                                                                         a‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAAc        >  1:437445/1‑250 (MQ=255)
                                                                                                                                                                                                                                                            tg‑ttg‑tCTTCAA‑CCGCCATGAGAAACTCATTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCGACtt      >  2:470681/1‑250 (MQ=255)
                                                                                                                                                                                                                                                                 g‑tCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACTTtgtg  >  2:591265/1‑250 (MQ=255)
                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                               
GGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAA‑GCCGACGAGC‑TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTT‑AAA‑CT‑GGCGG‑TTGAA‑TTG‑TTG‑TCTTCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑C‑GTTTACCGCCGGGCTGGACAAAAACT‑GCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACG‑GGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACTTTGTG  >  NZ_CP009273/2144921‑2145419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑