| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,394,818 | 0 | T | C | 34.3% | 136.8 / 13.8 | 70 | D625G (GAT→GGT) | csrD | RNase E specificity factor CsrD |
| Reads supporting (aligned to +/- strand): ref base T (44/2); new base C (0/24); total (44/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.26e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGCTAC > NZ_CP009273/3394572‑3395065 | gTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGAGTAAGGACATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATcca > 1:668420/1‑249 (MQ=255) aaaTCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGc > 1:19673/1‑250 (MQ=255) tctcTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCg > 1:492680/1‑250 (MQ=255) cccTGAGTCCAGAATGGCTTAATGCACCAGCCGCATTCCCCGCCTGTTGGCAACCGCGTAAGTACATTCATCTGCATATGTGCGCAAACAATCTGGCGAGCAGACAAGCACACTCCCATGAAACGCAGCGCGCATTATTCAACTTAAAAACGGATAAAAGGGGAGGTTAAACGGATTATTTTTGTAAATTTTTTTTCCCTTTTTTTTCAGGTG‑GTTGTGAGGACGCGAAAAATCCCCC‑TTGCCCGCCTGt < 2:533084/249‑1 (MQ=255) ccTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCt < 1:158567/247‑1 (MQ=255) aGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAac < 1:129405/248‑1 (MQ=255) ttAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAg > 1:556823/1‑250 (MQ=255) cATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTg > 1:601694/1‑250 (MQ=255) aTCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGc > 2:237175/1‑250 (MQ=255) aagctttcaccGCTTGTTTGCAGCCGCGAAAGTACATTCATCTGCATATGTGCGGCAACATTCGGGCGAGCAAACAGGCCCACTCCCATGAGACGAAGCGCGAATTTTTCTACTTAAAAACGGTTTAAACGGAAGTTAAAACCAATTATTTTGGTAAATATTTTTTCGCGTTAGTATAAAGGG‑GCGGGGAGGACGCAAAAAACCCCCC‑TGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTc < 2:740002/240‑1 (MQ=255) gcaTTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGc > 2:79399/1‑250 (MQ=255) aTTCCTCGCCTGTTTGCAACGGCGTAAGGTCATCCATCTGCATATGTGCTGAAACAATCTGGCGAGCAGACAAGCACACCCCCATGAGCCGCAGCGCTTATTATTCTACGTGAAAACGGATAAAACGGCAGTTTAAACCGAGTATCTTTGTGAATATTTTTCCACGTTAGTATCAGGGG‑GCTGGGAGGACGCAAAAAACCCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCtt < 2:121818/250‑1 (MQ=255) ttCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTc > 2:180093/1‑250 (MQ=255) cAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCgg > 1:163923/1‑250 (MQ=255) cgcgAAAGGTCATTCATCTGCATAGGTGCTCCACAAACCTGGCGAGCAAACAAGCACACCCCCATGACACCCAGCGCGCTTTTTTCTACGTAAAAACGGATTAAACGGCAGTTTAACCCGAGTATCTTTGTAAATATTTTTTCACTTGAGTATCAAGGG‑GCTGGGAGGCCGGGAAAAACCCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGc < 2:12896/250‑1 (MQ=255) gcgTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCg > 2:582367/1‑250 (MQ=255) gcgTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCA‑TTGCCCGCCTGTAACACCGCGCTGGATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTggag > 2:582402/1‑248 (MQ=255) tcatCTGCATATGTGCTGCAACAATCGGGCGAGCAGACAAGCACCCCCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGAATTAAACGGCAGTTTAACCCGAGTATCTTTGTGAATTTTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGt < 1:613329/249‑1 (MQ=255) catCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGc > 1:152943/1‑250 (MQ=255) catCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGATTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGc > 2:611153/1‑250 (MQ=255) cATATGTGCTGAAACAATCGGGCGACCAGAAAAGCACACACCCAGGAGACGCAGCGCGCTTTTTTCTACGTGAAAACGGATTAAACGGCAGGTTAACCCGAGTATCTTTGTGAATATTTTTTCACGTTATTATAAAGTG‑GCTGTGAGGCCGCGAAAAACCCCCC‑TGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTc < 2:707013/249‑1 (MQ=255) cATATGGGCTACAACAACCGGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGAGAAAACGGATTAACCGGCGGTTTAAACCGAGTATCTTGGTAAATATTTTTTCAGGTTAGTATAAAGTG‑GCTGTGAGGACGCAAAAAACCCCCC‑TTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTgg < 2:246280/247‑1 (MQ=255) tgtgCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTCAACCTGGGTGCTGGTCCCggc > 2:456915/1‑249 (MQ=255) tgtgCTGCAACAATCGGGCAACCAGACAAGCACCCCCCCATGAGCCGCAGCCCGCTTTATTCTCCGTAAAACCGGTTAAACCGGCAGGTTAACCCGAGTATCTTTGTAAATATTTTTTCACTTTAGTATCAAGTG‑GCTGTGAGGACGCAAAAAAACCCCC‑TTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCgg < 2:656453/249‑1 (MQ=255) gctgcAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAg > 1:427332/1‑248 (MQ=255) ctgcAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAg > 2:682739/1‑250 (MQ=255) ggCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAgg > 2:236298/1‑250 (MQ=255) aaGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACcag > 1:217914/1‑250 (MQ=255) aaGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACcag > 2:92524/1‑250 (MQ=255) cacaCTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACcagcag > 1:334031/1‑250 (MQ=255) cccTCCCATGAGACGCAGCGCGCATTATTCTACGTAAAAACGGATTAAACGGCAGGTTAAACCGATTATCTTTGTAAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGCCGCAAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCt < 1:301330/248‑1 (MQ=255) cacTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGACGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCt > 2:139213/1‑250 (MQ=255) ccATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGt < 1:194895/248‑1 (MQ=255) aTGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTtctc > 1:80873/1‑250 (MQ=255) aCGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCCTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTc > 2:204889/1‑250 (MQ=255) aGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCtt > 1:63142/1‑250 (MQ=255) cgcgcATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTtct > 1:296849/1‑250 (MQ=255) gcATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCaa > 2:671720/1‑250 (MQ=255) cATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAAt > 1:121896/1‑250 (MQ=255) cTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGCGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCt > 1:611357/1‑249 (MQ=255) aCGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGAc > 1:691660/1‑250 (MQ=255) cGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATAAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACAACGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGAc > 2:502023/1‑249 (MQ=255) cGTAAAAACGGATTAAACGGCAGGTAAACCCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GTTGTGAGGACGCAAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGAca < 1:312964/250‑2 (MQ=255) gAAAACGTATTAAACGGAAGGTAAATCGGAGTTTCTTTGTGAATTTTTTTTCAGTAGAGTATAAAGGG‑CCGTTGAGCCCGCAAAAAACCCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGc < 2:405734/250‑1 (MQ=255) aaaaCGTATAAAACGAAGTGTAAACCCGATTTTTTTTGT‑AATTTTTTTTCCCGTTTATTACAAGTGTGTTGTGAGGCCG‑GAAAAAACCCCCTTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGcc < 2:608275/250‑1 (MQ=255) aaggaaTTAACGGGCAGTTTAACCGGGGTATTTTTGTAAATTTTTTTCCCCGTTAGTAGAAGGTG‑GCTGGGAGGACGCAAAAAACCCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGcccc < 2:560447/245‑1 (MQ=255) aaCGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGcccc > 1:257707/1‑250 (MQ=255) ttAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATg > 1:62566/1‑249 (MQ=255) ttAAACGGAAGTTTAAACCTAGTATCTTTGTAAATATTTTTTCCCTTTATTTTCAAGTG‑GCTGTGAGGACGCGAAAAATCCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATgg < 1:455426/250‑1 (MQ=255) aaaCGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGCGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGGTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAg > 2:247027/1‑250 (MQ=255) ggCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCtt > 1:25542/1‑249 (MQ=255) gCAGGTAAAACGGAGTATTTTTGTAAATTTTTTTTCACGTTATTATAAAGGG‑GCTGGGAGGCCGCAAAAAAACCCCC‑TGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGa < 2:675187/250‑1 (MQ=255) ggTTAAACCGAGTATCTTTGTAAATATTTTTTCGCGTTATTATCAAGTG‑GCTTTGGGGCCGGAAAAAAACCCCC‑TGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTa < 1:48448/250‑1 (MQ=255) aaaCGGATTATTTTTGTAAATTTTTTTTCGCTTTATTAACAAGTG‑GCTGGGAGGACGAGAAAAACCCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTc < 2:511401/250‑1 (MQ=255) aTCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAg > 1:465561/1‑250 (MQ=255) tCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGt > 2:655624/1‑250 (MQ=255) cTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGACTCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGCTTCTGACCAGCCCCGGATGGTGCTTGAGTAACCCAACATTAAGtt > 1:63507/1‑250 (MQ=255) cTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGtt > 1:315340/1‑250 (MQ=255) tgtaAATATTTTTTCCCGTAAGTACAAGGGG‑GCGGTGAGACCGCAAAAAACCCCCC‑TGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCt < 2:42831/249‑1 (MQ=255) atatTTTTTCACGTTAGTTTAAAGTG‑GCGGTGAGGACGCAAAAAACCCCCC‑TGCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATc < 2:45636/250‑1 (MQ=255) atatTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATc > 2:260665/1‑250 (MQ=255) tatTTTTTCGCGTTATTATAAGGTG‑GCTGTGAGGCCGCAAAAAACCCCCC‑TTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATcc < 2:644960/250‑1 (MQ=255) ttttttCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCCGCCCCGGATGGAGCTTGAGTAACTAAACATTACGTTCTTTGTTCCaa > 2:732714/1‑250 (MQ=255) tttCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTg > 2:409793/1‑250 (MQ=255) gTTAGTATCAAGTG‑GCTGTGAGGACGCAAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACtt < 1:359591/250‑1 (MQ=255) taaaGGG‑GGTGTGAGGACGCAAAAAACCCCCC‑TCGCCCGCCTGTAACACCGCGCTGAAGCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCATCg < 2:174135/248‑1 (MQ=255) aaGTG‑GCTGGGAGGACGCGAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTc < 1:112456/250‑1 (MQ=255) cTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAAc > 2:593021/1‑248 (MQ=255) gAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCt > 1:734693/1‑250 (MQ=255) caTCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTCAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGCTAc > 2:577619/2‑250 (MQ=255) | GTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTG‑GCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGCTAC > NZ_CP009273/3394572‑3395065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |