| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,855,998 | 0 | T | C | 36.2% | 68.9 / 17.1 | 48 | pseudogene (966/1617 nt) | BW25113_RS19145 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (22/8); new base C (0/17); total (22/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.04e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTGCGGGAATCAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAG‑CTGCCGGAC > NZ_CP009273/3855751‑3856239 | ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGCG‑AAATGAACAGGAAGGCAAATTCC‑AGCGGTTC‑GGTAATTcc > 1:675314/1‑250 (MQ=255) agcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGtt > 1:18016/1‑249 (MQ=255) gggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGt < 2:437594/250‑1 (MQ=255) ggTAAAGCGTAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGtt < 2:103037/250‑1 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTg < 1:458379/250‑1 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTTAGGGTGc > 1:674220/1‑250 (MQ=255) aaGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTGCgg < 1:365545/250‑1 (MQ=255) aaGCACAACACAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTGCgg < 1:573096/250‑1 (MQ=255) caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTGCGGGAATc < 1:130964/250‑1 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGGCAAGGGTGCgggcaaccg > 2:246964/1‑244 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTGGGGGAATAAG‑C‑aaac > 1:471786/1‑248 (MQ=255) gCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTGCGGGAATCAG‑C‑AAGccc < 1:693552/249‑1 (MQ=255) ttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGGAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑ACAGCATGGC‑GGGTTAGATTGGGGGGAGCAG‑C‑AAAGCCCC‑CAcc > 2:690830/1‑249 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGGTAAGGGTGAGGGAAGAAG‑C‑AAAccccc‑ccccctttacccc > 2:70413/1‑238 (MQ=255) catATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGGTAAGGTGGCGGGGAATAG‑C‑AAACCCCC‑CACCTTTTcccccttt > 1:336299/1‑245 (MQ=255) catATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTACCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGGTCAGGGTGCCGGGAT‑AG‑T‑AAAACCACGCACTTTTACCCCAttt > 2:502335/1‑250 (MQ=255) cTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTTAGGGTGCGGGGAACAG‑C‑AAGCCCCC‑CACTTTTACCCCGTTTTccagagagggacgg > 1:415844/1‑237 (MQ=255) cTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTA‑GGTAATTCCCA‑CCAGCATGGCGGGTAAAGGTGGGGGGAACCA‑‑C‑AAGGCCCG‑CACATTTACCCCATTTTCCGGT‑GCGGccggc > 2:296048/1‑245 (MQ=255) gCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGGTGCGGGGATCAG‑C‑AAACCCCC‑CACTTTTACCCGATTTTTCCGT‑GCGGCAGCGAAGTAAAT‑CGCTTAAGAAAAGcc > 1:660052/1‑250 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGGTGCGGGAACCAG‑C‑AAGCCCGC‑CCCTTTTTCCCGATTTTTCGGT‑GCGGGCGGGAAGGACAT‑CGCCACAAAAAAGccc > 2:627285/1‑250 (MQ=255) aaccgactcatccAGCCCCCCCCCCGTGTTCCCCCCCCCACTAAAGAGAAACATTACGGTGAACACTGAGACCGACAGCCGGGCGTGTCCCGAAACCCGAAAGAGAA‑AAATGAAAGAGAGGGTAAATTCG‑GGGGGTTC‑GGTAACCCCCC‑CCAGCGTGGG‑GGTTAAGTGAGCGGAAATCAT‑C‑ACGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCa < 2:465621/238‑1 (MQ=255) ccTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTTGGGGGAACAGCC‑AACCCCCC‑CCCTTTTCCCCGTTTTTCC‑GT‑GCGGCCGGGAAATAAATCCCCTAAAAAAATCCCCCCgcacc > 1:505912/1‑246 (MQ=255) aatcccgccgtCCGCACTTGTGCCCCACCAAACAAAAGAGATAATTTGCGGTCGACTGTGGGGCCGCCAGCGGGGGTTTCACCAAAACCAG‑AATGGTGAAAATGAAGAGGAGGGAAATTCCC‑GGCGTTGA‑GGTAATACCCA‑CAAGCTTGGG‑TGTTAGGGTGGGGGGAAAAAG‑A‑AACCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGAt < 2:667943/240‑1 (MQ=255) aaacacaCCCCCGCCGTTGTTCCCCACCCCAAAAAAGAAAAACATGCGGGTGAAAAGGGAGGCCGCCAGCAGGGCGTGTCCCGAAAACAGAAAGGGAA‑AAAAAAACAGGAAGGAAAATCCC‑AGCGGTTC‑GGAAACCCCCA‑CCAGCAGGGG‑GGTTAGGGTGGGGGAAATCAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGAtt < 2:158080/244‑1 (MQ=255) aaTCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAAGGTGCGGGGAACAG‑C‑AAACCCCC‑CCCCTTTTCCCCATTTTTCCGT‑GCGGCAGGGAAGTACAA‑CCCTAAAAAAATGGCACCCGCA‑CCACAAAtt > 2:568095/1‑250 (MQ=255) aGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTTAAGGTGCGGGGAACAG‑C‑CAGCCCCC‑CACTTTTTCCCCATTTTTCGGT‑GCGGGAGTGGAAGACAT‑CGCTAAAAAAAAGCCCCCCGCA‑CCAAAAATTTTTg > 1:602319/1‑250 (MQ=255) cTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGGTAAGGTTGCGGGAATCAG‑C‑AAGCCCGC‑CCCCTTTTCCCGGTTTTTCGGG‑GCGGCCGGGGAGGACAA‑CGACTAAGAAATTCCCACCGCACCCAAAGAtttttaggt > 1:226887/1‑246 (MQ=255) cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGGTGCGGGGATCAG‑C‑AAACCCCC‑CACCTTTTTCCGATTTTCCCGT‑GCGGCAGTGAAGTAAAA‑CGCCAAAAAAAAACCCACGGGA‑CCAAAGATTTTTTAGGTAcc > 1:78446/1‑250 (MQ=255) gcccttttcccccACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGAAACGGTA‑AAATAAACAGGAAGGTAAATTCC‑AGCGTTTC‑GGTAATCCCCA‑CCAGCAGGGC‑GGTTAAGGTGGCGGGAACCAG‑A‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCg < 1:544864/240‑1 (MQ=255) atgtcccccACCACAACAAAGAGATACATTACGGTCGACAGGGAGCGCGCCAGCGCGGTGTATACCGAAAACAGCAGCGGAA‑AAATGAACAGGAAGGTAAATCCC‑AGCGGTTC‑GGTAACCCCCA‑CCAGCGGGGG‑GGTTAGGGTTGGGGAAATCAG‑C‑ACGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCa < 2:120611/244‑1 (MQ=255) cccACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTTAAGTTGCGGGGAACAC‑CAAAACCCCC‑CCCTTTTCCCCCTTTTTCC‑GT‑GCGGCCGGGGAGAAAATCCCCTAAAGAAACCCCCCCGCCC‑CAACAAATTTTTGAGTTACCGtccgggcc > 2:101972/1‑242 (MQ=255) cccaaaaaGAAAAACATAGCGGTGGAGAGTGAGCCCGCCGGCCGGGGGGGCACCGAAAAAAGCAGCGGAG‑AAAGGAACAGGAAGATAAATCCC‑AGGGGTGG‑TGAAATCCCCA‑CCAGCGTGGG‑GGTGAGGGTGGGGGAAAGCAG‑A‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑c < 2:278578/245‑1 (MQ=255) caAAGAAATACATCCGGGCCGCAATGGAGGCCCCCCCCGCGGGGTGTCCCGAAAACAGAACGGGTA‑AAATGAAAAGGAAGATAATTCCC‑GGGGGTCC‑GGTATCCCCCC‑CCTGCTGGGG‑GTTTAGGGTGGCGGAAATCAC‑C‑AACCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCGGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTc < 2:71866/250‑1 (MQ=255) gagaTACATTCCGGTCAACATGGAGGCCCCCAGCAGGGCGGGTACCGAAAACAGAAACGGTA‑AAATGAAAAGAAAGGTAAATCCC‑GGCGGTTG‑GGTAATCCCCC‑CCAGCGTGGG‑GGTAAAGGTGGGGGGAATCAG‑A‑AGGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCggg < 1:368040/250‑1 (MQ=255) gaTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGGAAATTCC‑AGCCGTTC‑GGTAATTCCCA‑CCAGCATGGCGGGTTAAGG‑TGCGGGAAAACG‑C‑AAAGCCCC‑CCCTTTTTCCCCACTTTTCGGTGGGGGCGGGGAAGAAAAC‑GGCTCAAGAAA‑GCCCCCGGTACCCAAAAATTTTTGGGTGCCTGTGC‑GGGCGAAACCC‑CCTTCCcggg > 2:240302/1‑248 (MQ=255) aCAGTAGGGGCGACATGGAGGCCGCCAGCGGGGGGTGTCCCGCAAACAGAAAGGGAA‑AAAGAAACAGGAAGGAAAATCCG‑GGGGGTTC‑GGTAATCCCCC‑CCAGCGTGGG‑GGTAAGGGTGGGGGGAATCAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGaacaa < 1:120486/250‑1 (MQ=255) cgccAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGGTTAGGGTGCGGGGAACAG‑C‑AAGACCGC‑CACTTTTACCCCAGTTTTCCGT‑GCGGCAGTGGAGTACAT‑CGCCCAAGAAATGCCCCCCGCC‑CCAAAGAATTTTGTGTTTCCCGGCAGGGGGAAAACC‑CCCTCTCGGAAGAAACATTTTAGCGGCTCTGgcgcc > 2:519812/1‑249 (MQ=255) gccgggCGGGTACCGAAAACAACAAGGGAA‑AAAAGAACGAGAGGGAAAATCCC‑GGCGGTCC‑GGAATCCCCCA‑CCAGCGGGGG‑GTTTAGGGGTGCGGAAACCAC‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACt < 2:674220/246‑1 (MQ=255) cACGGCGTGTACCGCAAACAGCAGCGGTG‑AAAAGAACAGGAAGGTAAATTCC‑GGCGGTTC‑GGTAATCCCCA‑CCAGCTGGGG‑GGTTAAGGTTGCGGAAATCAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTg < 1:340713/250‑1 (MQ=255) agcgagaaaaaGAAGAAGAAGAAAAATCCC‑GGCGG‑TC‑GATAACTCCCACCCAGCATGGC‑GGTAAAGGTGGCGGGAAACAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGccc < 2:303989/243‑1 (MQ=255) aaaTGAACAGGAAGGTAAATCCC‑GGCGGTTC‑GGTAATCCCCA‑CCAGCATGGC‑GTTTAAGGTTGCGGGAATCAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACAt < 1:105188/250‑1 (MQ=255) aCAGGAAAGTAAATTCCAAGGTGTTG‑GTTAATCCCCC‑CCACCAGGGC‑GTTTAGGGTGGGGGAAATAAA‑C‑AACCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGaa < 2:558256/250‑1 (MQ=255) aGGAAGTTAAATTGC‑AGCGTTCC‑GCTAACCCCCA‑CCAGAGGGGG‑GGTGAAGGTGGGGGAAATCAC‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATgc < 2:17293/250‑1 (MQ=255) gtaaaaTTCC‑‑GGGGTTCGGGAAATCCCCC‑CCAGCTTGGG‑GGTAAAGGTGGCGGGAACCAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCt < 1:610912/247‑1 (MQ=255) aaaTCCC‑AGCGGTTC‑GTAACTCCCCC‑CCAGCAGGGG‑TGTTAAGGTTGGGGAAAACAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTAAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCa < 1:690830/250‑1 (MQ=255) atccc‑AGCGGTTC‑GAAAATCCCCA‑CCAGCATGGC‑GGTTAGGGTGGCGGAAATAAG‑A‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAAc < 1:143860/247‑1 (MQ=255) ttcgtaaaTCCCCA‑CCAGCATGGG‑GTTAAAGGTTGCGGAAATCAC‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAG‑CTGCCGGa < 1:656986/244‑1 (MQ=255) ggTAATTCCCA‑CCAGCATGGC‑GGTTAAGGGTTCGGGGATCAG‑C‑AAGCCCGC‑CCCTTTTACCCGATTTTTCGGG‑GCGGGAGTGAAGGACAT‑CGCTAAAGAAATGCCCCCGGCA‑CCCAAAATTTTTTAGTTACCGTGCCGGGCAAAACCGCCCTTCCGGGAAC‑ACGATTTTAGCGGCTC‑GGGGCGCCAAACGAACTCCTGCCGAAGCTTGGCCCCGTACATCTGGATGGCGCCCTCCACAGCCTGCCGGAc > 2:139669/1‑249 (MQ=255) | GGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AAATGAACAGGAAGGTAAATTCC‑AGCGGTTC‑GGTAATTCCCA‑CCAGCATGGC‑GGTTAAGGTTGCGGGAATCAG‑C‑AAGCCCGC‑CACTTTTACCCGATTTTCCGGT‑GCGGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTC‑GGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAG‑CTGCCGGAC > NZ_CP009273/3855751‑3856239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |