| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,612,067 | 0 | A | G | 33.9% | 118.4 / 18.5 | 65 | E161G (GAG→GGG) | yjjJ | type II toxin‑antitoxin system HipA family toxin YjjJ |
| Reads supporting (aligned to +/- strand): ref base A (4/39); new base G (22/0); total (26/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.23e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAATT > NZ_CP009273/4611826‑4612314 | ttGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGGCGGGGGGGGGGAt > 1:461512/1‑249 (MQ=255) gCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTTGTTGGTGGGGGGGGGGGATTAt > 1:587586/1‑248 (MQ=255) ccGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGAt < 2:701367/250‑1 (MQ=255) gggAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGAtt < 2:494297/250‑1 (MQ=255) aaGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGAATTTTTAGCGATGGATTACt > 1:608713/1‑250 (MQ=255) gTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGGAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTTGTTGGTCGGGGGGGGGGATTATCCACGGTGGGTTAATgggca > 2:573257/1‑246 (MQ=255) ggCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGGATTTTTATCGATGGGTTATTGTCCAACACCCCGCgg > 1:554067/1‑250 (MQ=255) gcgcAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGa < 2:269795/250‑1 (MQ=255) ggCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTTGGTGGTCGGGGGGGGGGAGTATTCGCGAAGGGTTAGTGGACAACACCCCGCGGGACATCctc > 2:96910/1‑250 (MQ=255) gacgaACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTgg < 2:186402/250‑1 (MQ=255) acgaACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGa < 1:639812/250‑1 (MQ=255) cgtaCAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGAt < 1:690300/247‑1 (MQ=255) cgaACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGAt < 1:278295/250‑1 (MQ=255) agaACAGTGGTTTGATGGTTTGCCCGGGTATTTGACCGATCGCCGACCGCATGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGTTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGAt < 2:740126/249‑1 (MQ=255) aCAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGGAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTTGGCGGGGGGGGGAGTTTTTAGCGATGGAATTGTGCACAACACCCCGCCGGAATTCCCCTTGGTCa > 2:163918/1‑249 (MQ=255) aCAGTGGCTTGGTGGTTTGCCCTGGTATTTGGCCGATCTCCGATCGCAGGGCTTTTTAGGGCGCGCGTGGGTCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGTATTACTGCACAGCTCCCTGCGGAAATTCCTCTGGATCaa < 2:25726/250‑1 (MQ=255) tttGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCa < 2:233926/250‑1 (MQ=255) gTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCAtt < 1:434372/249‑1 (MQ=255) gTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTa < 1:443252/250‑1 (MQ=255) tttGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTAc < 2:152329/250‑1 (MQ=255) gCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTGGGCGGGGGGGGGGATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCCTTACGaa > 1:262576/1‑250 (MQ=255) cTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑g < 1:170661/250‑1 (MQ=255) gTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑Gc < 2:713613/248‑1 (MQ=255) gTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTg < 1:408844/250‑1 (MQ=255) gTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTACTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGGCGGGGGGGGGGATTATCAGCGATGGGTTACTGCACAACACCCTGCGGAAATTTCTCTGGATCAAAAAA‑TCACACATTACGAACA‑GCTg > 1:396352/1‑250 (MQ=255) tttGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGc < 1:637867/249‑1 (MQ=255) gACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAg < 1:667369/249‑1 (MQ=255) aCCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGt < 2:59980/249‑1 (MQ=255) ctcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGGATTATCAGCGATGGATTACTGCACAAAACCCTGCGGGAATTTCTCTGGATCAAAAAA‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCAc > 1:589376/1‑250 (MQ=255) ctcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGGATTATCAGCGATGGATTACTGCACAACACCCTGCGGGAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGGAAGTGaaggac > 1:472704/1‑245 (MQ=255) cGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACt < 2:651408/248‑1 (MQ=255) cGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTGGTCGGGGGGGGGGATTATCAGCGGTGGATTACTGCACAAAACCCCGCGGGAAATTCTCTGGGTCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTgg > 1:469017/1‑250 (MQ=255) aGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTTGGTGGTCGGGGGGGGGGATTATCAGCGATGGATTACTGCACAACACCCCGCGGAAATTCCTCTGGGTCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGgag > 1:519423/1‑249 (MQ=255) ggCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGCTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑aaa > 1:390052/1‑250 (MQ=255) gCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGAATTTTTAGCGATGGATTACTGCACAACACCCTGCGGGAATTTCTCTGGATCCAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAAt > 1:700278/1‑250 (MQ=255) tttAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATCCGTCTCTGGCTGGAAGAAGATGTGCTCTACGCCCTGACCGTTTTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGAATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCTTTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATtg < 1:719099/248‑1 (MQ=255) tttAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATtgt < 2:659706/249‑1 (MQ=255) ttAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGGCGGGGGGGGGGATTATCAGCGATGGATTACTGCACAAAACCCTGCGGAAATTCCTCTGGATCAAAAAA‑ACACCCCTTTCGAACACACTGGC‑AGTGGAGCCCTCGCAGGAG‑aaaaagagg > 2:616133/1‑244 (MQ=255) cgcgTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCGCTGGCAGGAAGAGGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTtcttct < 2:394283/250‑1 (MQ=255) gTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGagcag < 1:167255/250‑1 (MQ=255) tAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTGGTCGGGGGGGGGGGTTTTCAGCGCTGGGTTACTGCCCAACACCCTGCGGGAATTCCTCTGGGTCAAAAACTTCACCC‑TTACCGACA‑GCTGGGCCGTGGTGACCTGGCAGGAG‑ACATTGTTGGGTCTTCTGCGGGCGGCGaggcgcc > 2:111257/1‑245 (MQ=255) aGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGcc < 1:565166/249‑1 (MQ=255) tGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGGGTTATCAACGATGGAATTCTGGCCAAAACCCCGCGGAAATTCCTCTTGGTCCAAAAA‑TCAACCATTACGAACA‑GCCGGCAAGTGATGTACTGGCAGGCG‑CAAATGTGGGTGTTTTTGCGGGCAGCGGGGAGGCCACATTTAcact > 2:24277/1‑247 (MQ=255) gAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAAAACCCCGCGGAAAATCCTCTGGCTCAAAAAC‑TCACCCATTACGAAAA‑GCCGGCCAGGGATGCACTCGCAGGCG‑GAATTGTGGGGTTTTCTTCGGGCGGGGGGGCGCCAAAAATTTCctaa > 2:486585/1‑249 (MQ=255) tgactgaTGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGGATTATCAGCGATGGATTACTGCACAAAACCCCGCGGGAAATCCTCTGGATCAAAAAA‑TCAACCATTACGAAAA‑ACTGGCAAGTGATGCACCGGCAGGGGAAAATTGGGGGTT‑TTTTGCGGGGGGCGGGCAGCCAAAAATTACCTACTATg > 2:176791/1‑249 (MQ=255) actgaTGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGcac < 1:371454/250‑1 (MQ=255) ctgaTGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGcaca < 1:704015/250‑1 (MQ=255) atgatATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAGCACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACaa < 2:141585/248‑1 (MQ=255) tataCGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTGGGCGGGGGGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGGAATTTCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGGTCTTCTGCGGGCGGCGGGCAGACCAAAATTACCTACTATGCACAAAAGCCg > 1:36856/1‑250 (MQ=255) taCGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGt < 2:226746/249‑1 (MQ=255) cGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCa < 1:655198/249‑1 (MQ=255) gCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATa < 1:591509/248‑1 (MQ=255) aGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGGATTATCAGCGATGGATTACTGCACAACACCCTGCGGGAATTCCTCTGGATCAAAAAA‑TCACCCCTTACGAACA‑GCCGGCAAGTGATGCACTGTCAGGAG‑AAAATGTGGGTTCTTCTGCGGGGGGCGGGCGGCCACAAATTACCCAACATTCACAAACCCCCTCAGGCACTAAAc > 2:59845/1‑249 (MQ=255) aagaagATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACAtgt < 1:728111/250‑1 (MQ=255) gtgCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGGATTATCAGCGGTGGATTACTTCCCAAAACCCCGCGGGAAATTCTCTGGGTCAAAAAA‑TCACCCATTACCAACA‑ACTGGGCAGTGATTCACTGGCAGGGG‑AAATTGTGGGGTCTTCTTCGGGCGGCGCGCAGCCCAAAATTACCCACTATGTCCAAACGACGCTCCGCAATAAAAATAGG‑TTgggg > 2:47274/1‑247 (MQ=255) gCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGGATTATTAGCGATGGGTTACTGCACAACACCCTGCGGGAATTTCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGGGATGCACTGGCAGGGG‑GAATTGTGGGTTTTTCTTCGGGCGGGGGGCAGCCAAAATTTACCTTCTTTTCACAAAAGCCCGCCGGCAATAAACATTTG‑TTGGTgga > 1:220510/1‑247 (MQ=255) cGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTc < 1:4451/247‑1 (MQ=255) ccTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGAAGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTa < 2:180678/250‑1 (MQ=255) cTGACCGTATTTAACGGTGAATATACTGGCGGTTTGGTGGTCGGGGGGGGGAATTATCTGGGATGGATTTTTTCCCAAAACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACACACTCCAAACA‑ACTGGCAAGGGATGTCCTTGCAGGGG‑AAAATGTGGGGGCCTCTTCGGGGGGCGCGCAGCCAAAAATTTTCTACCCTGCAACAACGCCGCCCGGGCAAAAAAATGGGATGGGGGAAATTCAccccc > 2:618230/1‑247 (MQ=255) aaTATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGTAAACCGCGGTCa < 2:241488/249‑1 (MQ=255) taCTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCa < 1:34527/249‑1 (MQ=255) cGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCATAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTgg < 2:514814/250‑1 (MQ=255) cGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTgg < 2:145216/250‑1 (MQ=255) tggttggtCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGATCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAAGCAATAAACATGTG‑TTGGTGCAATTCAACGTACCACAGCAAACCGCGGTCAGCAAACGTTGGGGTg > 2:634524/1‑250 (MQ=255) tCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGTAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCt < 1:102265/250‑1 (MQ=255) gggaggggaATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAAt < 2:341088/250‑1 (MQ=255) ggaggggaATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAAtt < 2:587586/250‑1 (MQ=255) | TTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAAC‑TCACCCATTACGAACA‑GCTGGCAAGTGATGCACTGGCAGGAG‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTG‑TTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAATT > NZ_CP009273/4611826‑4612314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |