| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,652,424 | 0 | G | T | 33.3% | 114.3 / 16.6 | 72 | L33F (TTG→TTT) | ynfE | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase |
| Reads supporting (aligned to +/- strand): ref base G (19/29); new base T (24/0); total (43/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.08e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGCTTGAATTACCCA > NZ_CP009273/1652176‑1652670 | tACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGAGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGTCTGCAGGCGGTTTTTTTTTGc > 2:435390/1‑250 (MQ=255) tCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATGTTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCt < 1:382341/250‑1 (MQ=255) attaCTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTTCCGTTTACCCTTCGCAATg > 1:356164/1‑249 (MQ=255) attaCTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTTCCGTTTAACCTGCGCCATg > 2:593509/1‑249 (MQ=255) ccTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTACCCTGCGCAATGCAGCAGCAGCgg > 1:222288/1‑250 (MQ=255) ccTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTCTTTTTTTGCCGTTTACCCTTCGCCATGCAGCAGACGCgg > 2:68772/1‑250 (MQ=255) cTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTac < 2:173710/249‑1 (MQ=255) cTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTa < 1:724181/248‑1 (MQ=255) ttGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTATTTTCCGTTTTACCCGCGCCATgcagcagcacgcgtccaac > 2:402936/1‑239 (MQ=255) tGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCcg < 1:564969/250‑1 (MQ=255) taataaTTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTTCCCTTCGCAATGCAGCAGCCGCGGTGCAACAAGCCcg‑cgga > 2:196166/1‑247 (MQ=255) cTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTACCCTGCGCAATGCCACAGCCGCGGGAAAACCGGCCCG‑CGCAAAAgggggc > 2:651258/1‑248 (MQ=255) cccAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTGCCGTTTACCCTGCGCAATTCAGCCGCAGCGGGACAACAGGCCCGCCGaaaaaagggcttggg > 1:410685/1‑240 (MQ=255) gTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTTCCGTTTACCCTGCGCAATTCCGCAGCAGCGGGACAACAGGCCCG‑CGGAAAAGGGGTCTGGGGGGCCTGTTcc > 1:701667/1‑250 (MQ=255) tAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTGCCGTTTTCCCTGCGCAATGCAGCAGGCGCGGTACCACAGGCCCG‑CGGAAAAGTGGGCTGGGGGGCCTGTTTCg > 1:3057/1‑250 (MQ=255) ttGTTAGCGCGCTAAATATTCAATATATAAACTTTAATAAAACGATAAAGAAC‑GGGAGTTGAGTTATGTCCAAAAAGGAAGGATTGGTGGGCATCGGCCGCAGACCACTCTTTAAATCTCCCGGGATGGGTTCTCGGGCGCTGGCGGCGGGCGGTTTTTC‑TTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAg < 2:603112/249‑1 (MQ=255) gcgcTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTTACCTGCGCAATGCAGCAGCAGCGGGACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGGGCCTGTTTCGTCAAATGTGGTAGCCGCtgtg > 1:717572/1‑250 (MQ=255) gcgcTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCtgtg < 1:448961/250‑1 (MQ=255) gcTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGGACAACAGGCCCG‑CGGCAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCCGGGCa > 1:153883/1‑250 (MQ=255) tAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTTCCCTGCGCACAGCAGCACCACGGGCACAACCGGCCCG‑CGCCAAAGAGGTCTGGGGGGCCTGTTCCTGCAACTTGGGTATCCGCCGTGccca > 2:612614/1‑247 (MQ=255) tatTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTTCCCTGCGCAAAGACGCAGCAGCGGGACACAAGGCCCG‑CGGAAAAGGGGGGTGGGGGGCCCGTTCCGTCCACTGTGGTAGCCGCTGTGGCCTTCGt > 2:409433/1‑250 (MQ=255) ttCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTTCCCGTTACCCTGCGCAATGCAGCAGCAGCGGGATAAAAGGCCCG‑CGGAAAAGAGGGCCGGGGTGCCTGTTTCGTCCACCGGGGTAGCCGCCGGGGACTTCGCCt > 2:389887/1‑250 (MQ=255) ttCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGGGCCTGTTCCGTCAACCGTGGGAGCCGCTGTGCACTTCGTCt > 1:259437/1‑250 (MQ=255) cAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTa < 2:239250/249‑1 (MQ=255) aaTATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCCTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGCAAAAGAGGTCTGGGGGGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGGCTACa > 2:12849/1‑250 (MQ=255) tatataAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATg < 2:251341/250‑1 (MQ=255) atataAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTTCCGTTTACCCTGCGCAATGGAGCAGCCGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGGCTGTTCCCTCAACCGTGGGAGACGCTGTTCACGTCGTCTACATGt > 2:241176/1‑250 (MQ=255) aaaCTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTTCCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTa > 1:221754/1‑248 (MQ=255) aaCTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTaaa < 1:257196/249‑1 (MQ=255) aaCTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAg < 1:494461/250‑1 (MQ=255) tatataACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAAt < 2:104328/249‑1 (MQ=255) ataACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGGAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTGGCCGCTGTGGCATTCGTCTACATGTTAAAGATTATGAAg > 1:717148/1‑250 (MQ=255) aTAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGCTTTCCCTTCGCCCTGCCGCCACAGCGGGACAACAGGCCCC‑CGGAAAAGTGGGCTGGGGTGCCTGTTCCGTCAACTGTGGTTGCCGCTGTGCACTTCGGCTACATGTTTAAGGTAATGAAGTGACCt > 2:297918/1‑250 (MQ=255) aaGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACGGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTggg < 2:460440/250‑1 (MQ=255) aGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGt < 1:536526/250‑1 (MQ=255) gAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTg < 2:200710/250‑1 (MQ=255) cAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGGTTACCCTGCGCAATGCAGCAGCAGCGGGACAACAGGCCCG‑CGAAAAAGTGGGCTGGGGTGCCTGTTCCGTCCACTGTGGGAGCCGCTGTGCACTTCGTCCACATGGTAAAGATAATGAAGTGACCTGGGTggg > 2:166197/1‑248 (MQ=255) aGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGGGGTCTGGGGGGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCCCTTCGTCTACATGTTTAAGATAATGAAGTGACCTGGGGGGaaa > 1:654555/1‑250 (MQ=255) tgagtTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGCAAAAGTGGTCTGGGGGGCCCGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑Ac > 1:613127/1‑249 (MQ=255) tgagtTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTTCCCTGCGCAATGCAGCCGCAGCCGGACAAAACGCCCG‑CGGAAAAGTGGTTTGGGGGGCCCGTTTCCTCAACTGTGGGTACCCCTGTGCACCTTCTCTCCCAGTTTAAAGTAATGAAGTGACCTGGGGGGgaaacgac > 2:249823/1‑244 (MQ=255) gagtTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTTCCGTTTACCCTGCGCAATGCAGCAGCAGCGGGACAAAAAGCCCC‑CGAAAAAGAGGTCTGGGGGGCCCGGTCCGTCAACTGTGGGAGACGCCGTGAACCTCGTCTTCATGTTAAAGATAATGAAGTGACACGGGGGGAAACTG‑ACa > 2:164052/1‑249 (MQ=255) agtTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACaa < 1:547818/249‑1 (MQ=255) gtTAGGTCAAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATa < 2:379647/250‑1 (MQ=255) tCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTTCCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGGGCCTGTTTCCTCAACTGTGGTAGCCGCTGGGCACTTCGTCTACCTGTTAAAGATAATGAAGGGACCTGGGGGGGAACTG‑ACAAAACCgg > 1:238835/1‑248 (MQ=255) cAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGc < 1:588746/250‑1 (MQ=255) cAAAAATGAACGAAGGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAg < 2:434675/249‑1 (MQ=255) aaaaaTGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTACCCTGCGCAATGCAGCAGCAGCGGGACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGGGCCTGTTCCGTCAACTGTGGGAGCCCCCGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGGCCTGGGGGGGAACTG‑ACAAAACCGGCAACg > 2:711912/1‑250 (MQ=255) aaTGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGGACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGAt > 1:179784/1‑249 (MQ=255) aggagagAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCAGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGGCTGGGGTGTGTGTTCCGTCAACTGTGGTAGCGGCTGTGCACTTCGTCTGCATGTTAAAGATAAGGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGGGATGa < 2:197397/244‑1 (MQ=255) aCGAATGGTGGGCATCAGCCGCAGAACGCTCGTTAAATCTGCCGCGATAGGTTCTCTGGGGCTGGCTGCAGGCGGGTTTTCTTGGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGGCTGGGGTGCCGGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTAc < 2:130967/250‑1 (MQ=255) aaTGGTTGACATCGGCGGCATAACACGCGTTAAATCTACCGCGATAGGTGCTCTGGCGCTTGCGGCAGGCGGGTTTTCTTTGCCGTTTACCCTGCGCAATGCATCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑CCAATACCGGCAGCGATGAGTACGGc < 2:606950/250‑1 (MQ=255) aTGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTTCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAAGCCCG‑CGAAAAAGGGGTCTGGGGGGCCTGTTCCGTCCACTGTGGTAGCCGCTGTGCACCTCGTCTACATGTTAAAGATAATGGAGTGGACTGGGGGGGAACTG‑ACAAAACCGGCAGCGGTGAGTACGGc > 2:681013/1‑249 (MQ=255) aTGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGCTTACCCCGCGCAATGCAGCCGCCGCGGTACAACAGGCCCC‑CGGAAAAGCGGTCCGGGGGGCCCGTTCCGTCAACCGTGGGAGCCGCCCTGCCCCTCGTCTCCCTGTTAAAGATAATGAAGTGACCCGGGTGGGAACTG‑ACCATACCCGCCGCGGTGAGGACGGcc > 2:205760/1‑249 (MQ=255) aTCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTTCCGTTTACCCTGCGCAATGCAGCAGCAGCGGGACAAAAGGCCCG‑CGAAAAAGTGGTCTGGGGGGCCTGTTCCGTCAACTGTGGGAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAgg > 1:394567/1‑250 (MQ=255) gCCGCAGAACACGCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTAcg < 1:457842/250‑1 (MQ=255) cTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTTTTTGCCGTTTACCCTGCGCAATTCAGCAGCAGCGGTACAACAGGGCCG‑CGGAAAAGTGGGCTGGGGGGCCTGTTTCGTCAACTGTGGTAGCCGCCGTGCACCTCGTCTACCTGTTAAAGATAATGAAGGGACCTGGGGGGAAAATG‑ACCATACCGGCCGCGATGAGGACGGCCACCACTAGGGACGCGCCCGttttc > 2:360827/1‑248 (MQ=255) cGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTAACCTGCGCCATGCAGCAGCAGCGGGACAAAAGGCCCG‑CGGAAAAGTGGTCTGGGGGGCCCGTTCCGTCAACTGGGGGAGCCGCTGTGCAATTCGGCTACATGTTAAAAATAATGAAAGGGACTGGGGGGGAAAAG‑ACAAAACCGGCAGCGGTGAGTACGGCAACCATCAGGGAAGCGCCCGTTTgcgc > 2:536051/1‑250 (MQ=255) gTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTgcgc < 1:313957/249‑1 (MQ=255) aaaTCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTTCGCTTTCCCTTCGCAATGCAGCAGCAGCGGGACAACAGGCCCG‑CGGAAAAGTGGGCCGGGGTGCCTGGTCCGTCAACTGTGGTAGCCGCTGTGGACCTCCTCTTCCTTTTTAAGATAATGGAGGGGCCTGGGGGGGAACTG‑GCCAAACCGGCAGCGACTAGGACCGGCACCACCACGGACGCCCCCGGTTGCGCgggc > 2:726581/1‑248 (MQ=255) aaaTCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTACCCTGCGCAATTCAGCAGCAGCGGGACAACAGGCCCG‑CGGAAAAAAGGGCTGGGGGGCCTGTTCCGTCAAATGTGGTAGCCGCTGTGCCCCTCGTCTACCTGTTTAAGATAATGAAGTGACCTGGGGGGGAACTGAACAAACCCGGAGGCGATG‑GGACGGCAACCAACAGGGACCGGCCTGTTTTGGCgggc > 2:484437/1‑248 (MQ=255) aaaTCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGGGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGGACGGCAACCATCAGGGACGCGCCTGTTTTCGCGGTc > 1:64947/1‑250 (MQ=255) aaTCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCCATGCAGCAGCAGCGGGACAACAGGCCCG‑CGAAAAAGGGGGCTGGGGGGCCCGTTCCGTCAAACGTGGGAGCCGCTGTGCACTTTGTCTAAATGTTAAAGATAAAGAAGTGACCTGGGTGGGAACTG‑ACAATAACGGCAGCGATGGGTACGGCAACCATCAGGGACGCGGCTGTTTGCGCGGGCg > 2:422350/1‑250 (MQ=255) gATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATccgc < 1:645003/250‑1 (MQ=255) gTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTTCCGTTTACCCTGCGCAATGCAGCAGCAGCGGGACAACAGGCCCG‑CGAAAAAGTGGGCTGGGGGGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGGGGGAACTG‑ACAATACCGGCAGCGGTGAGTAAGGCAAACATCAGGGACGCGCCTGTTTGCGCGGGCGCCCCCTCCGCCGGCg > 2:273842/1‑250 (MQ=255) gcgcTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTaa < 1:121212/248‑1 (MQ=255) cgcTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAatca < 2:356164/250‑1 (MQ=255) cAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATc < 1:523850/249‑1 (MQ=255) cAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATc < 1:143661/249‑1 (MQ=255) cGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGCtt > 1:456474/1‑249 (MQ=255) gTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACAGGCAGCGATGAGTACGGCAACCATCAGGGACGCGCCTGTTTGCGAGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGCTTGaa > 2:518678/1‑250 (MQ=255) tttttCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCAACCGCCGGCGTATTAATCATCCCGATCGCTTGAAt < 1:703320/250‑1 (MQ=255) ttttCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGCTTGAAt > 2:254280/1‑249 (MQ=255) ggCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCACCCCGATCGCTTGAATTACCCa < 1:258953/247‑1 (MQ=255) | TACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAG‑TGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGCGGTTTTTCTTTGCCGTTTACCCTGCGCAATGCAGCAGCAGCGGTACAACAGGCCCG‑CGAAAAAGTGGTCTGGGGTGCCTGTTCCGTCAACTGTGGTAGCCGCTGTGCACTTCGTCTACATGTTAAAGATAATGAAGTGACCTGGGTGGAAACTG‑ACAATACCGGCAGCGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGCTTGAATTACCCA > NZ_CP009273/1652176‑1652670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |