| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,145,084 | 0 | C | A | 39.7% | 95.4 / 34.9 | 58 | P140Q (CCA→CAA) | yegJ | DUF2314 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base C (12/23); new base A (0/23); total (12/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TACTTTCGCAGTCAAAGCCCCGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCAT > NZ_CP009273/2144842‑2145325 | tACTTTCGCAGTCAAAGCCCCGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAaagaa < 2:795249/250‑1 (MQ=255) cTTTCGCAGTCAAAGCCCCGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAaagaag < 2:810679/249‑1 (MQ=255) tCGCAGTCAAAGCCCCGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAaagaagaa < 1:812043/248‑1 (MQ=255) aGTCAAAGCCCCGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCTTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCcgac < 1:160523/250‑1 (MQ=255) aaaGCCCCGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAg < 1:33031/249‑1 (MQ=255) ccccGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAag < 2:827301/250‑1 (MQ=255) ccGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAAtt < 1:178036/250‑1 (MQ=255) ggAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCt < 1:778519/250‑1 (MQ=255) aagaaCCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTTTATAATTTTTTCTTTTTTTTTTACCTCTTCAAAAAAAAAAAACGACGAGCTAAAAGAAAAAATATTTCTCTaa > 1:328327/1‑250 (MQ=255) cGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGcc < 1:449789/250‑1 (MQ=255) cATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑Tta < 1:876361/250‑1 (MQ=255) tttCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑Ttata < 2:71844/250‑1 (MQ=255) gCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTAtatttatt < 2:686545/250‑1 (MQ=255) cGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTa < 1:779468/250‑1 (MQ=255) cGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTa < 2:140227/250‑1 (MQ=255) aCTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGc < 1:420848/249‑1 (MQ=255) cTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTTTATCATTTATTCTTTTTTTGTTACCCATTCACAAAAAAAAAACGACGAGCGAAGAGGAAAAAAAATTTGCTAAT‑TAGCCG‑GTATAttttttttttttaaatgggg > 1:149973/1‑240 (MQ=255) aTTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑Gtt < 1:640243/249‑1 (MQ=255) aTTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑Gt < 1:937291/248‑1 (MQ=255) ttCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTg < 2:7102/249‑1 (MQ=255) tCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGGTATAACAATTGTTCTTTTTTTGTTTCCTTCTCAAAAAAAAAAAACGAAGAGGCAAGAGGAAAAATAATTTGCTTAA‑AAACCG‑GTATTTTTTTTTTTTtaaatagggggtgga > 1:795933/1‑238 (MQ=255) gCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTTTATCATTTTTTCTTTTTTTTTTTCCTATCCCAAAAAAAAAACCGAACAGCCAAAAGCAAAAATAAATTTCTTAT‑CTACCG‑TTATATTTTTTTTTTTAAATTGCG‑GGTggtgtttttt > 2:93184/1‑241 (MQ=255) gCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATtgttgt < 1:791385/250‑1 (MQ=255) tGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTTTATCATTTATCCTTTTTTTGTTACCTATCCCAAAAAAAAAACCGACCAGCCAAGAGCAAAAATAATTTGCTAAT‑CAACCG‑TTATATTTTTTTTTTTAAATTGCG‑GGTGGAtttttttttt > 1:339857/1‑245 (MQ=255) tttATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATTGTTGTCTTC‑a < 2:625855/250‑1 (MQ=255) gCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATTGTTGTCTTC‑AA‑CCGcc < 1:457744/249‑1 (MQ=255) tCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATAACATTTATCCTTTTTTTGTTACCTATTCCAAAAAAAAAAACGACGAGCTAAAAAGAAAAATAATTTGCTAAT‑AAACCGTTTTTTTTTTTTTTTTAAATTGCGG‑GTGGAATTTTTTTTTTT‑AA‑Cccccctaga > 1:234306/1‑244 (MQ=255) cAGAAATGCCCCTGGTATTGTAAAAAACGTAGAATAGGGCAAGAAGTGAAAAAAAAAAAAAAAAGATTTTTCAGACTGGATGTATACGCGGGGGAATAAAATTT‑ACGGCGTTTATACCATTGATCTTTTATTGGTCCCCTATCAAAAAGAAGAAGCCGACGAGTTAAGAGAAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACGGGGG‑TTTGAATTTTTGTCTTC‑AA‑CCGCCATGAGaaa < 2:346378/250‑1 (MQ=255) ttATTGTTAAAAACGTAAAATAGGGCCAGGAGTGAAAAATCAAAAAAGAAGATATTTCAGATGGGATGTATCCGCGGGGGGATAAAATTT‑ACGGCGGTTATACCTTTAATCTTTTATTGGCCCCCTATCAAAAAGAAGAAGCCGACGAGCTAAGAGAAAAATTAGTCCGCTAAC‑CAGCCT‑TTATATTTATTTTTTAAACGGGCG‑GTTGATTTGTTTTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGccc < 1:885877/247‑1 (MQ=255) aaaaaggaaaaaTAGGGCAAGGAGGGAAAAATAAAGAAAAAAGATATTTCAGACGGGATGTATACGCGGGGGAAAAAAATTT‑ACGGCGTTTATCCCTTTGATCTTTTATTGGTCCCCTACCAAAAAAAAGAAGCCGACGAGTAAAGAGAAAAATTAGTTCGCTAAT‑CAGCCT‑TTATATTTTTTGTTAAAACGGGCG‑TTTGAATTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg < 1:274615/240‑1 (MQ=255) aCAAACGTAAAATAGGGCCAGGAGTGAAAAATCAAAAAAAAAAATATTTCAGACTGGATGTATCCGCGGGGGAAAAAAATTT‑ACGGGGTTTATCCCTTTTATCTTTTATTGGTCCCCTATCCAAAAGAAGAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAAT‑CAGCCG‑TTATTTTTATTTTTTAAACTGGCG‑GTTAAATTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg < 1:788060/250‑1 (MQ=255) cAAACGTAGAATGGGGCCGGGAGTGAAAAACAAAAAAAGAAAATATTTCAGACTGGATGTATCCGCGGGGGGATAAAATTT‑ACGGCGGTTATACCTTTGATCTTTTATTGGTCCCCTATCAAAAAGAAGAACCCGACGAGAAAAGAGAAAAATTGGTTCGCTAAT‑CAGCCG‑TTATATTTATTTTTTAAACTGGCG‑GTTGAATTGTTGTCTTA‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt < 1:865507/250‑1 (MQ=255) aGAATAGGGCAAGGAGTGAAAAAAAAAAAAAAAAGATATTTCAGATGGGATGTATCCGGGGGGGAAAAAAATTT‑CGGGGGTTTATCCCATTTATCTTTTATTGGTCCCCTAACAAAAAGAAGAAGCCGAGGAGCAAAGAGAAAAATTAGTTCGCTAAT‑CGGCCT‑TTATTTTTATTGTTAAAACGGGCG‑GTTAATTTTTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 2:306955/250‑1 (MQ=255) gggCCAGGAGTGAAAAATCAAAAAAGAAGATATTTCAGACTGGATGTATCCGCGCGGGGATAAAATTT‑CCGGCGGTTATACCTTTGATCCTTTATTGGTCCCCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCT‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTa < 1:305662/248‑1 (MQ=255) ggCCGGGAGTGAAAAATAAAGAAAAAAGATATTTCAGACTGGATGTATACGCGGGGGAAAAAAATTT‑ACGGCGTTTATACCTTTGATCTTTTATTGGTCCCCTATCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTAGTTCGCTAAT‑CAGCCG‑TTATTTTTATTTTTAAAACTGGCG‑TTTGATTTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatc < 1:98006/250‑1 (MQ=255) aaaaaaaaaaaagaaGATATTTCAGACTGGATTTATCCGCGGGGGGAAAAAATTT‑CCGGCGTTTATACCTTTGATCTTTTATTGGTCCCCTACCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTTTTGTTTAAACTGGCG‑GTTGAATTTTTGTCTTA‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACg < 1:172017/241‑1 (MQ=255) caaaaaaaaaaGTTTTTTCAGCCGGGTTGTATCCGCGGGGGAAAAAAATTG‑AGGGCGGTAACACTTTTGATCTTTTATTGTCCCCCTACCAAAAAGAAGAAGCCGACGAGAAAAGAAAAAAATTAGTCCTCAAAT‑CAGCCT‑TTATTTTTTTTTTTAAAACGGGGG‑TTTGATTTTTTTTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCg < 2:522690/245‑1 (MQ=255) ttacAGACTGGTTGTTACCGCGGGGGAATAAAATTT‑AGGGGGTTTAACCTTTTGTTCTTTTATGGGCCACCTAACAAAAAGAAGAAGCCAACGAGAAAAAAAAAAATTTATTTCGCTAAC‑CACCCT‑TTATTTTTTTTTTTAAACCGGGCG‑TTTAATTTTTTGTCTAC‑AC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCt < 2:185763/246‑1 (MQ=255) gACGGGTTGTATACGCGGGGGAAAAAAATTT‑CCGGCGGTTATCCCTTTGTTCTTTTTTTGGTCCCCTACCAAAAAAAAAAAGCCGAGGAGCAAAGAAAAAAATTAGTTCGCTAAT‑CAGCCT‑TTATTTTTTTTTTTAAAACTGGGG‑TTTAAATTTTTGTCTTA‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACaa < 1:401135/250‑1 (MQ=255) acgggATGTATACGCGGGGGAATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCAAAAAAAAGAAGCCGACGAGCAAAGAAAAAAATTAGTTCGCTAAC‑CAGCCT‑TTATATTTTTTGTTAAAACGGGGG‑GTTGAATTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACaaa < 1:666117/247‑1 (MQ=255) gATGTATACGCGGGGGAAAAAAATTT‑ACGGCGTTTATCCCTTTGATCTTTTATGGGTCACCTACCAAAAAAAAGAACCCGACGAGCAAAGAAAAAAATTAGTTCGCTAAT‑CAGCCT‑TTATATTTATTGTTAAAACTGGCG‑TTTGATTTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACt < 1:552510/250‑1 (MQ=255) cggggtgaaaaaatTTT‑ACGGCTGTATTCCTATTTTTCTTTTTTTGGCCCCCTATAAAAAAGAAGAGGCCGACGAGTAAAAAGAAAATTTTGTTC‑ATAATGCGGCTT‑TTTTTTTTATTTTTTAACCGGGCG‑GTTTATTTGTTATCTAC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACa < 2:889170/240‑1 (MQ=255) gcgggggAAAAAATTTGACGGTGATTATACCATTTATCTTTTATTGATCACCTACCAAAAAGAAGAAGCCGAGAAAAAAAAAAAAAAATTATTCCCCTAAC‑CAGCTT‑TTATTTTTTTTG‑TTAAAAGGGGG‑GTTGAATTTTTTTTTTCAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACa < 2:154656/247‑1 (MQ=255) gggggATAAAATTT‑ACGGGGGTTATCCCTTTGATCTTTTTTTGGTCCCCTATCAAAAAAAAAAAGCCGACGAGTTAAGAAAAAAATTATTTCGCTAAT‑CAGCCG‑TTATATTTATTTTTAAAACGGGGG‑TTTGAATTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAAtt < 1:703846/249‑1 (MQ=255) aaTTT‑ACGGAGGTTATACATTTGATCCTTTATGGGTCACCAATCAAAAAGAAAAGGCCAAAGAGCAAAGAGAAAATTTAGTTCGATAAT‑CAGCCT‑TTATATTTATTGTTAAAACGGGCG‑GTTGAATGGTTGTCTTA‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaata < 1:798132/250‑1 (MQ=255) tttt‑AGGGCGTTTATACCATTAATCCTTTATTGGTCACCTATCAAAAAAAAAAGCCCGACGAGTTAAGAAAAAAATTATTTCGCTAAT‑CAGCCG‑TTATATTTTTTGTTTAACCTGGGG‑TTTGAATTGTTTTCTCC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaataa < 1:737415/249‑1 (MQ=255) ccggcgtTTATCCTTTTGATCTTTTTTTGGTCCCCTACCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAAT‑CAGCCT‑TTATTTTTTTTTTTAAACCGGGCG‑TTTGATTTTTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATc < 1:607010/248‑1 (MQ=255) tatcCCTTTGATCTTTTATTGGTCCCCTACCAAAAAAAAGAGCCCGAGGAGAAAAGAGAAAAATTAGTCCTCTAAC‑CAGCCT‑TTATTTTTTTTTTTAAACCGGGCG‑TTTAATTTTTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAgttgtt < 1:493130/249‑1 (MQ=255) cATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATTTTTTTCTTT‑AA‑CCCCCATGAGAAAATCACCCTGCCCCCAACGCCAGTGCCAACGTTTTTTCATCATCCGTACGCCCGCTTACCCCCCGGCTGGGCAAAAAATGCTTTAACAATTCCGGTAATAAATTGAGTTGTTTCTGCg > 2:453155/1‑250 (MQ=255) tGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTTAATTGTTGTTTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAACGCCAGTGCCAAAGTTTTATTATCATCCGTACGCTCGTTTAACGCCGGGCCGGACAAAAACTGCTTTAACAATTCAGGTAATAAAACGAGTTGTTTCTTCGttt > 2:937216/1‑249 (MQ=255) tGACCCTTTATGGGCCCCCTACCAAAAAAAAGAGCCCGACAAGCAAAAAGAAAATTTATTTCGCTAAT‑CGGCCT‑TTATATTTATTTTTTAAACTGGGG‑TTTAATTTGTTGTCTCC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGtt < 1:229380/249‑1 (MQ=255) gATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGGATTTTTGTCTTC‑AA‑CCGCCCAGTGAAAATTTCTCTGCCCACCGCGCCAGTGCCAAAGTTTTATTATCATCCGTACGCCCGTTTACCGCCCGGCCGGACCAAAAACGCTTTAACAATTCAGGTAATAAATCGAGTTTTTCCTGCCTtgc > 2:535991/1‑250 (MQ=255) aTCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATTTTTGTCTTT‑TA‑CCGCCCTGAGAAAATCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATAATCCGGACGCTCGTTTACCCCCGGGCCGGACAAAAAATGCTTTAAAAATTCAGGGAATAAATCGAGGTGTTCCTGCGGtgct > 2:212040/1‑250 (MQ=255) cTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTTAATTGTTGTCTTC‑AA‑CCGCCCTGAGAAAATCACTCTGCCCACAGCGCCAGGGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTTACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTgcc > 2:187068/1‑250 (MQ=255) tttATTGTTCACATACAAAAAAAAAGAGACCGAGGGGATAAGAGAAAAATTATTTCGTTACC‑CTCCTT‑TTATATTT‑TTTTTTAAACGGGGGTGTTAATTTGTTTTCTTC‑AC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTgcc < 2:862873/249‑1 (MQ=255) ttATTGGCCCCCTACCAAAAAAAAGAAGCCAACGAGCTAAGAGAAAAATTATTTCGCTAAT‑CAGCCT‑TTATTTTTTTTTTTAAAACGGGCG‑GTTAAATTGTTTTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTgccg < 1:588244/249‑1 (MQ=255) tccACCTAACAAAAAAAAAAAGCCGACGACATAAGAGAAATATTAGTTCGTTAAT‑CATCTT‑TTTTTTTTATTTTTTAAGCGGGGG‑GTTGAATT‑TTTTCTTC‑AACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTcc < 2:788841/248‑1 (MQ=255) cACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATTGTTGTCTTC‑AA‑CCCCCATGAGAAAATCACTCTTCCCCCAGCGCCAGTGCCCACGGTTTTTCCTCATCCGTACGCCCGTTTACCGCCCGGCTGGACAAAAAATGCTTTAAACATTCAGGGACTAAATACAGGTGTTTCTGCGTTGGTGCCCCCAGTCCAt > 2:306988/1‑250 (MQ=255) | TACTTTCGCAGTCAAAGCCCCGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAACTGGCG‑GTTGAATTGTTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCAT > NZ_CP009273/2144842‑2145325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |