| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,145,134 | 0 | G | T | 37.7% | 92.9 / 18.3 | 61 | intergenic (+7/+58) | yegJ/pphC | DUF2314 domain‑containing protein/protein‑serine/threonine phosphatase PphC |
| Reads supporting (aligned to +/- strand): ref base G (17/21); new base T (0/23); total (17/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.71e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATT > NZ_CP009273/2144888‑2145374 | cATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑Tta < 1:876361/250‑1 (MQ=255) tttCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑Ttata < 2:71844/250‑1 (MQ=255) gCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTAtatttatt < 2:686545/250‑1 (MQ=255) cGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTa < 1:779468/250‑1 (MQ=255) cGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTa < 2:140227/250‑1 (MQ=255) aCTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGc < 1:420848/249‑1 (MQ=255) cTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTTTATCATTTATTCTTTTTTTGTTACCCATTCACAAAAAAAAAACGACGAGCGAAGAGGAAAAAAAATTTGCTAAT‑TAGCCG‑GTATAttttttttttttaaatgggg > 1:149973/1‑240 (MQ=255) aTTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑Gtt < 1:640243/249‑1 (MQ=255) aTTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑Gt < 1:937291/248‑1 (MQ=255) ttCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTg < 2:7102/249‑1 (MQ=255) tCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGGTATAACAATTGTTCTTTTTTTGTTTCCTTCTCAAAAAAAAAAAACGAAGAGGCAAGAGGAAAAATAATTTGCTTAA‑AAACCG‑GTATTTTTTTTTTTTtaaatagggggtgga > 1:795933/1‑238 (MQ=255) gCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTTTATCATTTTTTCTTTTTTTTTTTCCTATCCCAAAAAAAAAACCGAACAGCCAAAAGCAAAAATAAATTTCTTAT‑CTACCG‑TTATATTTTTTTTTTTAAA‑TTGCG‑GGTggtgtttttt > 2:93184/1‑241 (MQ=255) gCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑Ttg‑ttgt < 1:791385/250‑1 (MQ=255) tGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTTTATCATTTATCCTTTTTTTGTTACCTATCCCAAAAAAAAAACCGACCAGCCAAGAGCAAAAATAATTTGCTAAT‑CAACCG‑TTATATTTTTTTTTTTAAA‑TTGCG‑GGTGGA‑ttt‑ttttttt > 1:339857/1‑245 (MQ=255) tttATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑a < 2:625855/250‑1 (MQ=255) gCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGcc < 1:457744/249‑1 (MQ=255) tCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATAACATTTATCCTTTTTTTGTTACCTATTCCAAAAAAAAAAACGACGAGCTAAAAAGAAAAATAATTTGCTAAT‑AAACCGTTTTTTTTTTTTTTTTAAAT‑TGCGG‑GTGGAA‑TTT‑TTTTTTTT‑AA‑Cccccctaga > 1:234306/1‑244 (MQ=255) cAGAAATGCCCCTGGTATTGTAAAAAACGTAGAATAGGGCAAGAAGTGAAAAAAAAAAAAAAAAGATTTTTCAGACTGGATGTATACGCGGGGGAATAAAATTT‑ACGGCGTTTATACCATTGATCTTTTATTGGTCCCCTATCAAAAAGAAGAAGCCGACGAGTTAAGAGAAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑GGGGG‑TTTGAA‑TTT‑TTGTCTTC‑AA‑CCGCCATGAGaaa < 2:346378/250‑1 (MQ=255) ttATTGTTAAAAACGTAAAATAGGGCCAGGAGTGAAAAATCAAAAAAGAAGATATTTCAGATGGGATGTATCCGCGGGGGGATAAAATTT‑ACGGCGGTTATACCTTTAATCTTTTATTGGCCCCCTATCAAAAAGAAGAAGCCGACGAGCTAAGAGAAAAATTAGTCCGCTAAC‑CAGCCT‑TTATATTTATTTTTTAAAC‑GGGCG‑GTTGAT‑TTG‑TTTTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGccc < 1:885877/247‑1 (MQ=255) aaaaaggaaaaaTAGGGCAAGGAGGGAAAAATAAAGAAAAAAGATATTTCAGACGGGATGTATACGCGGGGGAAAAAAATTT‑ACGGCGTTTATCCCTTTGATCTTTTATTGGTCCCCTACCAAAAAAAAGAAGCCGACGAGTAAAGAGAAAAATTAGTTCGCTAAT‑CAGCCT‑TTATATTTTTTGTTAAAAC‑GGGCG‑TTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg < 1:274615/240‑1 (MQ=255) aCAAACGTAAAATAGGGCCAGGAGTGAAAAATCAAAAAAAAAAATATTTCAGACTGGATGTATCCGCGGGGGAAAAAAATTT‑ACGGGGTTTATCCCTTTTATCTTTTATTGGTCCCCTATCCAAAAGAAGAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAAT‑CAGCCG‑TTATTTTTATTTTTTAAAC‑TGGCG‑GTTAAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg < 1:788060/250‑1 (MQ=255) cAAACGTAGAATGGGGCCGGGAGTGAAAAACAAAAAAAGAAAATATTTCAGACTGGATGTATCCGCGGGGGGATAAAATTT‑ACGGCGGTTATACCTTTGATCTTTTATTGGTCCCCTATCAAAAAGAAGAACCCGACGAGAAAAGAGAAAAATTGGTTCGCTAAT‑CAGCCG‑TTATATTTATTTTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTA‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt < 1:865507/250‑1 (MQ=255) aGAATAGGGCAAGGAGTGAAAAAAAAAAAAAAAAGATATTTCAGATGGGATGTATCCGGGGGGGAAAAAAATTT‑CGGGGGTTTATCCCATTTATCTTTTATTGGTCCCCTAACAAAAAGAAGAAGCCGAGGAGCAAAGAGAAAAATTAGTTCGCTAAT‑CGGCCT‑TTATTTTTATTGTTAAAAC‑GGGCG‑GTTAAT‑TTT‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 2:306955/250‑1 (MQ=255) gggCCAGGAGTGAAAAATCAAAAAAGAAGATATTTCAGACTGGATGTATCCGCGCGGGGATAAAATTT‑CCGGCGGTTATACCTTTGATCCTTTATTGGTCCCCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCT‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTa < 1:305662/248‑1 (MQ=255) ggCCGGGAGTGAAAAATAAAGAAAAAAGATATTTCAGACTGGATGTATACGCGGGGGAAAAAAATTT‑ACGGCGTTTATACCTTTGATCTTTTATTGGTCCCCTATCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTAGTTCGCTAAT‑CAGCCG‑TTATTTTTATTTTTAAAAC‑TGGCG‑TTTGAT‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatc < 1:98006/250‑1 (MQ=255) aaaaaaaaaaaagaaGATATTTCAGACTGGATTTATCCGCGGGGGGAAAAAATTT‑CCGGCGTTTATACCTTTGATCTTTTATTGGTCCCCTACCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTTTTGTTTAAAC‑TGGCG‑GTTGAA‑TTT‑TTGTCTTA‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACg < 1:172017/241‑1 (MQ=255) caaaaaaaaaaGTTTTTTCAGCCGGGTTGTATCCGCGGGGGAAAAAAATTG‑AGGGCGGTAACACTTTTGATCTTTTATTGTCCCCCTACCAAAAAGAAGAAGCCGACGAGAAAAGAAAAAAATTAGTCCTCAAAT‑CAGCCT‑TTATTTTTTTTTTTAAAAC‑GGGGG‑TTTGAT‑TTT‑TTTTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCg < 2:522690/245‑1 (MQ=255) ttacAGACTGGTTGTTACCGCGGGGGAATAAAATTT‑AGGGGGTTTAACCTTTTGTTCTTTTATGGGCCACCTAACAAAAAGAAGAAGCCAACGAGAAAAAAAAAAATTTATTTCGCTAAC‑CACCCT‑TTATTTTTTTTTTTAAACC‑GGGCG‑TTTAAT‑TTT‑TTGTCTAC‑AC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCt < 2:185763/246‑1 (MQ=255) gACGGGTTGTATACGCGGGGGAAAAAAATTT‑CCGGCGGTTATCCCTTTGTTCTTTTTTTGGTCCCCTACCAAAAAAAAAAAGCCGAGGAGCAAAGAAAAAAATTAGTTCGCTAAT‑CAGCCT‑TTATTTTTTTTTTTAAAAC‑TGGGG‑TTTAAA‑TTT‑TTGTCTTA‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACaa < 1:401135/250‑1 (MQ=255) acgggATGTATACGCGGGGGAATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCAAAAAAAAGAAGCCGACGAGCAAAGAAAAAAATTAGTTCGCTAAC‑CAGCCT‑TTATATTTTTTGTTAAAAC‑GGGGG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACaaa < 1:666117/247‑1 (MQ=255) gATGTATACGCGGGGGAAAAAAATTT‑ACGGCGTTTATCCCTTTGATCTTTTATGGGTCACCTACCAAAAAAAAGAACCCGACGAGCAAAGAAAAAAATTAGTTCGCTAAT‑CAGCCT‑TTATATTTATTGTTAAAAC‑TGGCG‑TTTGAT‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACt < 1:552510/250‑1 (MQ=255) cggggtgaaaaaatTTT‑ACGGCTGTATTCCTATTTTTCTTTTTTTGGCCCCCTATAAAAAAGAAGAGGCCGACGAGTAAAAAGAAAATTTTGTTC‑ATAATGCGGCTT‑TTTTTTTTATTTTTTAACC‑GGGCG‑GTTTAT‑TTG‑TTATCTAC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACa < 2:889170/240‑1 (MQ=255) gcgggggAAAAAATTTGACGGTGATTATACCATTTATCTTTTATTGATCACCTACCAAAAAGAAGAAGCCGAGAAAAAAAAAAAAAAATTATTCCCCTAAC‑CAGCTT‑TTATTTTTTTTG‑TTAAAA‑GGGGG‑GTTGAA‑TTT‑TTTTTTTCAAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACa < 2:154656/247‑1 (MQ=255) gggggATAAAATTT‑ACGGGGGTTATCCCTTTGATCTTTTTTTGGTCCCCTATCAAAAAAAAAAAGCCGACGAGTTAAGAAAAAAATTATTTCGCTAAT‑CAGCCG‑TTATATTTATTTTTAAAAC‑GGGGG‑TTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAAtt < 1:703846/249‑1 (MQ=255) aaTTT‑ACGGAGGTTATACATTTGATCCTTTATGGGTCACCAATCAAAAAGAAAAGGCCAAAGAGCAAAGAGAAAATTTAGTTCGATAAT‑CAGCCT‑TTATATTTATTGTTAAAAC‑GGGCG‑GTTGAA‑TGG‑TTGTCTTA‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaata < 1:798132/250‑1 (MQ=255) tttt‑AGGGCGTTTATACCATTAATCCTTTATTGGTCACCTATCAAAAAAAAAAGCCCGACGAGTTAAGAAAAAAATTATTTCGCTAAT‑CAGCCG‑TTATATTTTTTGTTTAACC‑TGGGG‑TTTGAA‑TTG‑TTTTCTCC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaataa < 1:737415/249‑1 (MQ=255) ccggcgtTTATCCTTTTGATCTTTTTTTGGTCCCCTACCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAAT‑CAGCCT‑TTATTTTTTTTTTTAAACC‑GGGCG‑TTTGAT‑TTT‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATc < 1:607010/248‑1 (MQ=255) tatcCCTTTGATCTTTTATTGGTCCCCTACCAAAAAAAAGAGCCCGAGGAGAAAAGAGAAAAATTAGTCCTCTAAC‑CAGCCT‑TTATTTTTTTTTTTAAACC‑GGGCG‑TTTAAT‑TTT‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAgttgtt < 1:493130/249‑1 (MQ=255) cATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTT‑TTTTCTTT‑AA‑CCCCCATGAGAAAATCACCCTGCCCCCAACGCCAGTGCCAACGTTTTTTCATCATCCGTACGCCCGCTTACCCCCCGGCTGGGCAAAAAATGCTTTAACAATTCCGGTAATAAATTGAGTTGTTTCTGCg > 2:453155/1‑250 (MQ=255) tGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTTAA‑TTG‑TTGTTTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAACGCCAGTGCCAAAGTTTTATTATCATCCGTACGCTCGTTTAACGCCGGGCCGGACAAAAACTGCTTTAACAATTCAGGTAATAAAACGAGTTGTTTCTTCGttt > 2:937216/1‑249 (MQ=255) tGACCCTTTATGGGCCCCCTACCAAAAAAAAGAGCCCGACAAGCAAAAAGAAAATTTATTTCGCTAAT‑CGGCCT‑TTATATTTATTTTTTAAAC‑TGGGG‑TTTAAT‑TTG‑TTGTCTCC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGtt < 1:229380/249‑1 (MQ=255) gATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGGA‑TTT‑TTGTCTTC‑AA‑CCGCCCAGTGAAAATTTCTCTGCCCACCGCGCCAGTGCCAAAGTTTTATTATCATCCGTACGCCCGTTTACCGCCCGGCCGGACCAAAAACGCTTTAACAATTCAGGTAATAAATCGAGTTTTTCCTGCCTt‑gc > 2:535991/1‑250 (MQ=255) aTCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTT‑TTGTCTTT‑TA‑CCGCCCTGAGAAAATCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATAATCCGGACGCTCGTTTACCCCCGGGCCGGACAAAAAATGCTTTAAAAATTCAGGGAATAAATCGAGGTGTTCCTGCGGt‑gct > 2:212040/1‑250 (MQ=255) cTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTTAA‑TTG‑TTGTCTTC‑AA‑CCGCCCTGAGAAAATCACTCTGCCCACAGCGCCAGGGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTTACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTgcc > 2:187068/1‑250 (MQ=255) tttATTGTTCACATACAAAAAAAAAGAGACCGAGGGGATAAGAGAAAAATTATTTCGTTACC‑CTCCTT‑TTATATTT‑TTTTTTAAAC‑GGGGGTGTTAAT‑TTG‑TTTTCTTC‑AC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTgcc < 2:862873/249‑1 (MQ=255) ttATTGGCCCCCTACCAAAAAAAAGAAGCCAACGAGCTAAGAGAAAAATTATTTCGCTAAT‑CAGCCT‑TTATTTTTTTTTTTAAAAC‑GGGCG‑GTTAAA‑TTG‑TTTTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTgccg < 1:588244/249‑1 (MQ=255) ggacacttaccaaaaaaaAGAGGCCGACGAGAAAAGAGAAAAATTGGTCCGATAAT‑CGGCGT‑TTATTTTTTTTTTTAAACC‑GGGCG‑GTTAAT‑TTT‑TTGTCTTA‑AC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGt < 1:967687/237‑1 (MQ=255) tccACCTAACAAAAAAAAAAAGCCGACGACATAAGAGAAATATTAGTTCGTTAAT‑CATCTT‑TTTTTTTTATTTTTTAAGC‑GGGGG‑GTTGAA‑TT‑‑TTTTCTTC‑AACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTcc < 2:788841/248‑1 (MQ=255) gtccccaaccaaaaaaaaaaaGCCGAAGAGCAAAGAAAAAAATTATTCCTCAAAT‑CAGCCT‑TTATTTTTTTTTTTAAACC‑GGGCG‑TTTAAT‑TTT‑TTGTCTCC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTcc < 1:715469/239‑1 (MQ=255) cACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCCCCATGAGAAAATCACTCTTCCCCCAGCGCCAGTGCCCACGGTTTTTCCTCATCCGTACGCCCGTTTACCGCCCGGCTGGACAAAAAATGCTTTAAACATTCAGGGACTAAATACAGGTGTTTCTGCGTT‑GGTGCCCCCAGTCCAt > 2:306988/1‑250 (MQ=255) aaaaGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGTA‑TTG‑TTGTCTTT‑AA‑ACGCCATGAGAAACACACTCTGCCCACAGCGCCACTGCCCACGGTTTTTTATAATCCCCACGCCCGTTTAACGCCGGGCTGGACAAAAAATGCTTTTACAATTCCGGTAATAAATCGAGGTGTTCCTGCGTT‑TCTGCCGCCCATCCATTTaaaaaag > 2:722512/1‑248 (MQ=255) aagaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAAAAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAAAGGGGt > 1:145425/1‑249 (MQ=255) ccgcgaaGCAAAGAGAAAAATTATTCCGCAAAC‑CAGCTT‑TTAT‑TTTTTTTTTTAAAC‑CGGGG‑GTTTAATTTT‑TTTTCTCC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTaaagaaa < 1:484573/244‑1 (MQ=255) ccgccggcatAAGAAAAAAATTGGTTGGTTAAC‑CAGCCT‑TTTTTTTTATT‑TTTAAACTTGGCG‑TTTGAG‑TTG‑TTTTCTCC‑AC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTaaagaaa < 1:530625/241‑1 (MQ=255) acgaGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGGAAAGAAAgg > 1:91553/1‑249 (MQ=255) gcaaaGAGAAAAATTATTTCGCTAAT‑CAGCCT‑TTATTTTTTTTTTTAAACC‑TGGCG‑TTTAAT‑TTT‑TTTTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACAt < 1:890235/247‑1 (MQ=255) agagAAAAATTAGTTCGTTAAC‑CGGCTG‑TTATTTTTTTTGTTTAACC‑GGGGG‑GTTAAT‑TTT‑TTTTCTAA‑AC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgagg < 1:455869/250‑1 (MQ=255) aaTTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCCTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTTACAATTTAGGTAATAAATCGAGTTGTTCCTGCGGT‑GCTGCCGCCAGTCCATTGAAAAACGGGGGAAAGAAAGGCACATGAGGAGAATTa > 1:815528/1‑250 (MQ=255) ttAGCTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTGCTGGTCTCC‑AA‑CCCCCA‑GAGTAAATCACTCCGGCCACAACGGCAGGGCCAACGCTTTTTTAACATCCCTGTGGTCCCTTACCGCCGGGGCGGGGAAAAAAAGGTTTTACAACTTAGGGAATAAATAGTGGTGGTCCTTCGTTGGCTG‑CGCCAGGTCCTTGAAAAAAGGGGGAAATAAAGGCATATGAGGGGAAATATc > 2:590504/1‑250 (MQ=255) attccGCTAAC‑CAGCTG‑TTATATTTATTTTTAAACC‑TGGCG‑TTAGAT‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATcc < 1:675982/245‑1 (MQ=255) tAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATAtt > 1:950077/1‑250 (MQ=255) aaaccacctg‑TTATTTTTTTTTTAAAAAC‑TGGGG‑GTTAAA‑TTT‑TTTTTTCC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCata < 1:127224/239‑1 (MQ=255) | CATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTT‑ACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAAT‑CAGCCG‑TTATATTTATTGTTTAAAC‑TGGCG‑GTTGAA‑TTG‑TTGTCTTC‑AA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTT‑GCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATT > NZ_CP009273/2144888‑2145374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |