| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,091,435 | 0 | T | G | 39.7% | 118.3 / 11.2 | 68 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| Reads supporting (aligned to +/- strand): ref base T (10/31); new base G (27/0); total (37/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.21e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCTGATGGGTGAAGCTATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGAT > NZ_CP009273/4091186‑4091661 | cGCTGATGGGTGAAGCTATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCggtggt < 1:232907/250‑1 (MQ=255) atGAAGGGTGAAGCTATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGttt < 2:539344/249‑1 (MQ=255) aTGGGTGAAGCTATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATAGCCAACGGCGGGGGggtttt > 2:343989/1‑250 (MQ=255) ggTGAAGCTATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTGTTTTtgt > 2:314558/1‑250 (MQ=255) tGAAGCTATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGa < 1:475070/250‑1 (MQ=255) aGCTATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑a < 1:286918/250‑1 (MQ=255) tATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTGTTTTTTTGAT‑T‑AAtt > 2:17368/1‑250 (MQ=255) tATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGGT‑C‑AAtt > 1:266337/1‑250 (MQ=255) ttCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGAGGTGTTTTTTTGAT‑C‑AAtttt > 2:553292/1‑248 (MQ=255) ggCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAAt < 2:28330/250‑1 (MQ=255) gcTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAGCCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATaaa < 1:96905/250‑1 (MQ=255) gcTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTGAT‑C‑AAATTCA‑AAATaa > 2:217452/1‑249 (MQ=255) cTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑C‑CATTTCA‑AAATaaa > 2:574102/1‑249 (MQ=255) cTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑C‑AATTTCA‑AAATaaa > 1:196040/1‑249 (MQ=255) ccGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAAc < 1:389612/249‑1 (MQ=255) ttCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑C‑AATTTTA‑AAATAAAAACAATGAt > 1:410704/1‑250 (MQ=255) ttCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGGTTTTTTTCAT‑T‑AATTTTACAAATAAAAACaagct > 2:368147/1‑247 (MQ=255) gATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGT‑T‑AATTTTT‑AAATAAAAAAAAAGATCCGa > 2:280634/1‑249 (MQ=255) aTGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGataaa < 1:449555/249‑1 (MQ=255) aTGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGataaa < 1:300589/249‑1 (MQ=255) tGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGataaaaa < 2:499511/250‑1 (MQ=255) gCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGataaaaat‑aa < 1:135188/250‑1 (MQ=255) ccTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGataaaaat‑aaa < 1:476722/250‑1 (MQ=255) gtgtgGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGAT‑C‑AATTTTA‑AAATAAAAAAAAAGATCCGATAAAAAA‑AAAAAAGCGt > 1:582064/1‑250 (MQ=255) aTGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGAt < 1:467573/250‑1 (MQ=255) cTTACTACCTGAAATGCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGAtgt < 2:448279/249‑1 (MQ=255) acCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGAT‑T‑AATTTTA‑AAATAAAAAAAATGATCCGGTAAAAAA‑AAAAAAACGGTTCAATTGATGTGGgtttt > 1:440110/1‑249 (MQ=255) ccTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGT‑C‑AAATTTA‑AAAAAAAAAAAAAGATCCGATAAAAAA‑AAAAAAGCGTTTCAATTTTAGTGGtttttt > 2:490072/1‑248 (MQ=255) tGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AAATTTA‑AAATAAAAAAAATGATCCGATAAAAAT‑AAAAAAGCGTTTCAATTTATGTGGTTTTGAt > 1:237446/1‑249 (MQ=255) aaTTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTTATCC‑AATTTC‑‑AAATAAAAAAAAAGATCCGATAAAAAA‑AAAAAAACGTTTCAATTGATTTTGTTTTTAttcct > 2:20549/1‑246 (MQ=255) gAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGACGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTg < 1:180007/250‑1 (MQ=255) gccgTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTGGT‑CAAATTTCA‑AAA‑AAAAAAAAAGATACCCTAAAAAT‑AAAACAACGATTCTATTGATGTGGGTTTTTTCACTTTtatttattt > 2:397052/1‑248 (MQ=255) cgTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaat < 2:127328/250‑1 (MQ=255) cgTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑C‑AATTTTC‑AAATAAAAAAAAAGATTCGATAAAAAT‑AAAAAAGCGTTTCAATTGATGTGGTTTTTATCACTTTTATTTATTAaat > 1:135123/1‑250 (MQ=255) gTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGAT‑C‑AATTTTA‑AAAAAAAAAAAATGATCCGATAAAAAT‑AAAAAAACGGTTCAATTGATGTGGTTTTTATCACTTTTATTGATTAaat > 1:467404/1‑249 (MQ=255) cGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatgaat < 1:66109/250‑1 (MQ=255) aTTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCt < 1:487985/250‑1 (MQ=255) agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTc < 2:212300/250‑1 (MQ=255) agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑T‑AATTTCA‑AAATAAAAAAAAAGTTTCCAAAAAAAA‑AAAACAACGGTTTCATTTTTGTGGGTTTGATTCCTTTTATTTATTTAAATAATGTTTA‑TATTTGtttt > 1:178101/1‑249 (MQ=255) cTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGGT‑C‑AATTTCA‑AAATAAAAACAAAAATCCGATAAAAAT‑AAAAAAGCGTTTTAATTGATGTGGGTTTTTTTACTTTTTTTTATTAAATTAATGTCTA‑TCTTTGTTTCCAt > 2:38996/1‑249 (MQ=255) gtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATTAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGAt < 2:479960/249‑1 (MQ=255) aCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGT‑C‑AAATTTA‑AAATAAAAACAAAAATCCGATAAAAAT‑AAAAAAGCGTTTTCATTGATGTTGTTTTGATCACTTTTATTGATTTAATTAATGTCTA‑TTTTCGTTTTCATCCACACTGAttgttc > 2:63056/1‑245 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCAtt < 1:25390/249‑1 (MQ=255) cGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAAAAATGATCCGATAAAAAT‑AAAACAGCGTTTCCATTTTTGTGGTTTTTATCACTTTTTTTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTTAgg > 1:425915/1‑250 (MQ=255) cagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑C‑AATTTCA‑AAAAAAAAAAAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTTATGTGGTTTTTATCACTTTTTTTTATTTAATGAATGTCTA‑TCTTCGTTTTCATCAACACTGATGCTCCATTTAGGAATTa > 2:370028/1‑250 (MQ=255) agcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTAc < 1:94451/250‑1 (MQ=255) gcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTaaaa < 1:217452/250‑1 (MQ=255) cgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTaaaaa < 1:412843/250‑1 (MQ=255) gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAat < 1:580651/250‑1 (MQ=255) aaaaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGT‑C‑AATTTTC‑AAATAAAAAAAAAGATCCGGTAAAAAA‑AAAAAAGAGGTTTAATTTATGTGGTTTTTATTACTTTTATTTATTAAAAGAAAGTCTA‑TCTTTGTTTTCATCAAAACATATGCTCCCTTGAGGAATTAAGCATCAGACCCTaaaaaaa > 2:248500/1‑248 (MQ=255) aaaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAatat < 1:122131/250‑1 (MQ=255) aaaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑C‑AATTTTA‑AAAAAAAAAAAAAGATCCGGTAAAAAA‑AAAAAAACGGTTCAATTTATGTGGGTTTTATCACTTTTTTTTATTTAATGAAAGTCTA‑TCTTCGTTTTCATCAACACTGATGCTCCCTTGTGGGAATAAGCCTCAAACCCTAAAAataa > 2:606462/1‑249 (MQ=255) aTTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAgg < 1:317200/249‑1 (MQ=255) ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTTGGTTTTTTGTGTT‑C‑AATTTTC‑AAATAAAAAAAAAGGTTTGAAAAAAATAAAAACAGGTTTTTAATT‑ATGTGGGTTTGATTCATTTTATTGATTAAATAAATTTTTA‑TCTTCGGTTTTCTTAAAAATTATGTACCATTATCGATATACGCATCATCCCCTTAAAATATTCCCAcca > 2:294220/1‑244 (MQ=255) ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑C‑AATTTCC‑AAATAAAAAAAAAGATCCGATAAAAAT‑AAAACAGCGTTTTCATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGTTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATgaccgcagggga > 2:605425/1‑239 (MQ=255) ccgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATg < 1:268309/249‑1 (MQ=255) ctgctgCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGGTTTTTTTGGT‑T‑AAATTTA‑AAAAAAAAAAAAAGGTCCGATAAAAAT‑AAAAAAGCGTTTTAATTGATGAGGGTTTGATAACTTTTTTTGATTAAAAGAATGTTTA‑TATTCGTTTCCCTCAAAAATTATGACCCATTTGAGAAATAAGCAACAGACCTTACAAAAATGACGGCAGGGGGTGGAAAt > 2:207849/1‑250 (MQ=255) tgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTGAT‑C‑AAATTTA‑AAATAAAAAAAAAGAACCGATAAAAAA‑AAAAAAGCGTTTCAATTTATGTGGTTTTGATCACTTTTATTTATTAAATGAATGTCTA‑TCTTTGTTTTCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTTAAAATAAACCGACAGGGGGTGGaaaag > 2:539845/1‑245 (MQ=255) cAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGGT‑C‑AATTTAA‑AAATAAAAACAAAAAACCGATAAAAAA‑AAAACAGCGTTTCAATTGATGTGGTTTTTATCACTTTTATTGATTAAATGAATTTCTA‑TTTTTGTTTTCCTCAACAATGATGCTCCATTGAAGAATTACGCATCAGCCCTTAAAAAAATGCCGACAGGTGATGGAAAAGCAGa > 2:574861/1‑249 (MQ=255) aTGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGAT‑C‑AAATTTA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTTATGTGGTTTTTATCACTTTTATTTATTTAATGAATGTCTA‑TCTTCGTTTCCCTCAACACTGATGCTCCATTGAGGAATTACGCCTCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATa > 1:369737/1‑249 (MQ=255) gAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGAT‑C‑AATTTTA‑AAATAAAAAAAATGATCCGATAAAAAA‑AAAACAGCGTTTTAATTGATGTGGGTTTTATCACTTTTTTTTATTAAATTAATGTCTA‑TCTTCGTTTTCATCAACACTGATGCTCCATTGAGGGATTACGCATCAACCCTTTAAAAAATGCCGACAGGGGGTGGAAAAGCAGATaaa > 1:324393/1‑249 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTTTTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAAc > 1:47903/1‑250 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAAc < 2:64337/250‑1 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAAc < 1:408987/250‑1 (MQ=255) ggCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGGTTTTATCACTTTTTTTGATTAAATGAATGTCTA‑TCTTTGTTTTCATCAACACTGATGCTCCCTTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGGGATGGAAAAGCAGATAAAACg > 1:534352/1‑250 (MQ=255) gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTga < 1:610155/250‑1 (MQ=255) cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGAT‑C‑AATTTTA‑AAAAAAAAAAAAAGATCCGATAAAAAA‑AAAAAAGCGTTTTAATTGATGTGGGTTTTATCACTTTTATTGATTAAATGAATGTCTA‑TCTTTGTTTTCATCAACACTGATGCTCCATTGAGGAATTAAGCATCAGCCCTTTAAAATATACCGACAGGTGGTGGAAAAGTAGAAAAAACGCCCGATTgag > 2:82002/1‑249 (MQ=255) cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGCGGGTTTTTTTTGAT‑A‑AAATTTA‑AAAAAAAAAAAAAGATACGATAAAAAA‑AAAAAAGAGGTTTAAATAAAGTGGGTTTTATCAATTTTATTGATTAAAAAAAAGTTTATTCTTGTTTTCCA‑CAACACTGAAGGTCCATTGAGGAATTAAGCATCAGCCCTTAAAAAAAAGCCGACAGGGGAAGGGAATGCAGATaaaaaacccggttgga > 2:104955/1‑237 (MQ=255) ttAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAT‑T‑AAATTCA‑AAATAAAAACAAAGATCCGATAAAAAT‑AAAACAGCGTTTTAATTGATGTGGTTTTGATCACTTTTATTGATTAAAAGAATGTCTA‑TCTTCGTTTTCATCAACACTGATGCTACATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGGGATGGAAATGCAGATAAAAAGATCGATTGAGAAAAAACCgggg > 2:423903/1‑250 (MQ=255) aaaaaaTGAACCATCGCCAACAGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCTATAAAAAT‑AAAACAGCGTTTCAATTGATTTGGTTTTGATCACTTTTATTGATTAAATTAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAAGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTTAGAAAATCCCggggc < 2:505459/249‑2 (MQ=255) tGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGgatgat < 2:297554/250‑1 (MQ=255) | CGCTGATGGGTGAAGCTATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAT‑C‑AATTTCA‑AAATAAAAACAATGATCCGATAAAAAT‑AAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTA‑TCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGAT > NZ_CP009273/4091186‑4091661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |