| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,277,638 | 0 | G | A | 46.0% | 42.5 / 31.4 | 50 | intergenic (‑339/‑54) | acs/nrfA | acetate‑‑CoA ligase/ammonia‑forming nitrite reductase cytochrome c552 subunit |
| Reads supporting (aligned to +/- strand): ref base G (27/0); new base A (0/23); total (27/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.26e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAG > NZ_CP009273/4277394‑4277883 | aCGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGaaaaa > 1:489406/1‑250 (MQ=255) cGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGCTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGaaaaa > 2:300688/1‑249 (MQ=255) aaaGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAAt > 2:263700/1‑249 (MQ=255) tgCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCAtt > 1:170863/1‑250 (MQ=255) aaTAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATATGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCCTTGcaa > 1:137733/1‑250 (MQ=255) aGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGgcgc > 2:346380/1‑249 (MQ=255) aTTTTGGAAGGTCAGAAACAAAAGTTGATTAATTCTTTGAGGAACATGCTGTTATGCATGTTGTTAAAAAAGAGGAAGATACTGACTAACTCAAAAGTGGTATTTTACATGCACTTAAAATTGATTAAAGACAACATTCACAGTGTGGTTTTTTGTTACACATAGGGGCGAGAAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGGAAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCg < 2:202992/249‑1 (MQ=255) gAAGGTCAGCAACAAAATTTGATTAATTTTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTAAAATTGATAAAAGACAACATTCACAGTGTGGTTATTTTTTACACAGAGGGGCGAGAAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTAAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGaa < 2:336712/249‑1 (MQ=255) cAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAGAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTa > 1:438183/1‑250 (MQ=255) aaaaGTTAATTAATTCTTTGAGGAACATGCGGTTATGCATGCTGTTGAAAAAGAGAAAAATACGGACTAACTCTAAAGTGTTATTTTACATGCACTTAAAATGAATAAAAGCCAACATTCACATTGTGGTTTTTTGTTACGCTTAGGGGCGACCAATGTCATGAC‑GGTGTAGGTGCGT‑TTACTGTCAGAAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAg < 1:260900/250‑1 (MQ=255) aGTTGATTAATTCTTTGAGGAACATGCATTTATGCATGCTGTTAAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGT‑TTACTGTCGTAAAAAACAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGAt < 1:39859/250‑1 (MQ=255) ggtttAATTTTTTGAGAAACATCCAGTTATGCATGTTGTTGAAAAAGAGGAAGATACTGACTAACTCAAAAGTGGTTTTTTCCATGCACTTACAATTGATTAAAGACAACTTTCAAAGTGTGTTTTTTTGTTACAAATGGGGGCGAGCAATTTCAGGAC‑AGTGTAGGTGCGG‑TTACTGTCGGAAAAAACAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATaa < 2:79464/246‑1 (MQ=255) ttCTTGGAGGAACATGCAGTTATGCATGTTGTTAAAAAAGAGAAAAATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATAAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGGGCGG‑TTACTGTCGTAAAAAACAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAac < 1:409692/250‑1 (MQ=255) tGAGGAACATGAAGTTATGCATGCTGTTGAAAAAGAGGAAGATACGGACTAACTCAAAAGGGGTATTTTACATGCATTTAAAATTAATTAAAGACAAAATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGAAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTAAAAAAAAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAacgcac < 1:390547/249‑1 (MQ=255) gAACATGCAGTTATGCATGCTGTTAAAAAAGAGGAAGATACGGACTAACTCAAAAGTGGTATTTTACATGCACTTAAAATTAATTAAAGACAACATTCAAAGTGTGTTTTTTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGGGTAGGTGCGG‑TTACTGTCGTAAAAAACAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGt < 1:413702/250‑1 (MQ=255) gTTAGGCATGCTGTTAAAAAAGAGGAAAATACTGAATAACTTAAAAGTGTTATTTTACATGCACTTACAATTGATAAAAGAAAATATCCACGGTGTGTTTTTTTGTTACACAGGGGGGCGAGCAAGTTCATGAA‑AGTGGGGGTGCGT‑TTACTGTCGAAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGc < 2:462516/250‑1 (MQ=255) catgtTGTTAAAAAAGAGAAAATTATTAATAAAATTAAAAGTGTTTTTTTAAATACTCTTAAAATTAATTAAGAAAAACTTCAACAGTGTTTTTTTTTTTCAAAAAGAGGGGGAAGAAATGTAAGAAC‑GGTGTTGG‑GCGGTTTCCGGTCGAAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTg < 2:200943/250‑1 (MQ=255) tACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTc > 1:184323/1‑250 (MQ=255) aCTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCt > 1:464079/1‑250 (MQ=255) tGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGt > 1:92286/1‑250 (MQ=255) ctAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGCAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTg > 2:484344/1‑249 (MQ=255) ctAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTg > 2:10216/1‑249 (MQ=255) tacttcctcTTAAAATTTATTAAAGACAACATCCACAGTGTGTTTTTTTTTTACAAATGGGGGCGAGCAATGTATTGCC‑GGTGTGGGTGCGT‑TTATTGTGGAAAAAAAAAAAAAAACCCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGgctgct < 2:571277/241‑1 (MQ=255) aCATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTcc > 2:564910/1‑250 (MQ=255) cATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTccc > 2:154698/1‑250 (MQ=255) atttAAAATTAATAAAAGAAAACATTCAAGGTGGGTTTATTTGTTACACATGGGGGCGAGAAATGTAATGAC‑GGTGTAGGGGCGT‑TTATTGTCGTAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCaaa < 1:604798/248‑1 (MQ=255) cAATGGATTAAAGACAACATTCAGAGTTTGGTTTTTTGTTACACAGGGGGGCGGGAAATTACATAAC‑AGTGTGGGTGCGG‑TGCTTGTCGGAAAAAACAAAAAAACCCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTg < 2:127805/250‑1 (MQ=255) aaaTTAATAAAAGAAAAAATCCAAAGTGGGGTTATTTGTAACCAAAGGGGGGGAGAAATGTCA‑GACAAGTGTGGGGGGGG‑TTACTGTGGAAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCt < 1:230102/248‑1 (MQ=255) tGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAAc > 2:16218/1‑250 (MQ=255) ataaaaGAAAACATTCAAAGGGTGTTTATTTGTAACACATGGGGGCGAGAAATGTCATGAC‑GGTGTGGGTGGGG‑TTATTGTGTTAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACtg < 1:509165/247‑1 (MQ=255) ttAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACtgt > 1:461859/1‑250 (MQ=255) aaGAAAACATCCACGGGGTGTTTTTTTTTTCCAAAAGGGGGAGAAAAATGTCATGAC‑AGTATGGGGGGGT‑TTACTGTGTAAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGa < 2:404258/250‑1 (MQ=255) aGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGaaa > 1:515271/1‑250 (MQ=255) tgtttATTTGTTACAAATGGGGGCGAGCAATGTCATGAC‑AGGGTGGGTGCGG‑TTACTGTCGTAAAAAACAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCtt < 1:491116/247‑1 (MQ=255) tgGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCtt > 1:340864/1‑250 (MQ=255) aTTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGccc > 2:199078/1‑250 (MQ=255) aTTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGccc > 2:533778/1‑250 (MQ=255) tGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCg > 1:77591/1‑249 (MQ=255) acaaATGGGGGGGAGAATTGTCATGAA‑AGTTGAGGTGGGT‑TTACTGTCGTAAAAAACAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCgcagca < 1:149626/250‑1 (MQ=255) aGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAatat > 2:476899/1‑250 (MQ=255) aTGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATAtctct > 2:530405/1‑250 (MQ=255) tgccgtGAC‑GGGGTAGGTCCGG‑TTGCGGTGTTAAAAAACAATAAAACCCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATAtctctc < 2:14261/245‑1 (MQ=255) tCAGGAC‑AGTGTAGGTGGGT‑TAACGGTGGAAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCt < 1:184875/250‑1 (MQ=255) aTGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTg > 1:416029/1‑249 (MQ=255) aGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGc > 1:259161/1‑250 (MQ=255) gTGCGT‑TTACGGTCGTAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCg < 1:516431/250‑1 (MQ=255) cgtttACTGCGGTAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGaa < 1:230963/247‑1 (MQ=255) gtttACTGTCGTAAAAAAAAAAAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAAc < 1:186480/248‑1 (MQ=255) ttACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAg > 2:573204/1‑250 (MQ=255) tCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCagag > 2:330360/1‑250 (MQ=255) | ACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAG > NZ_CP009273/4277394‑4277883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |