| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,277,647 | 0 | T | A | 39.6% | 59.4 / 31.4 | 48 | intergenic (‑348/‑45) | acs/nrfA | acetate‑‑CoA ligase/ammonia‑forming nitrite reductase cytochrome c552 subunit |
| Reads supporting (aligned to +/- strand): ref base T (24/5); new base A (0/19); total (24/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.37e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAGCGTGTT > NZ_CP009273/4277399‑4277889 | aaaGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAAt > 2:263700/1‑249 (MQ=255) tgCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCAtt > 1:170863/1‑250 (MQ=255) aaTAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATATGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCCTTGcaa > 1:137733/1‑250 (MQ=255) aGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGgcgc > 2:346380/1‑249 (MQ=255) aTTTTGGAAGGTCAGAAACAAAAGTTGATTAATTCTTTGAGGAACATGCTGTTATGCATGTTGTTAAAAAAGAGGAAGATACTGACTAACTCAAAAGTGGTATTTTACATGCACTTAAAATTGATTAAAGACAACATTCACAGTGTGGTTTTTTGTTACACATAGGGGCGAGAAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGGAAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCg < 2:202992/249‑1 (MQ=255) gAAGGTCAGCAACAAAATTTGATTAATTTTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTAAAATTGATAAAAGACAACATTCACAGTGTGGTTATTTTTTACACAGAGGGGCGAGAAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTAAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGaa < 2:336712/249‑1 (MQ=255) cAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAGAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTa > 1:438183/1‑250 (MQ=255) aaaaGTTAATTAATTCTTTGAGGAACATGCGGTTATGCATGCTGTTGAAAAAGAGAAAAATACGGACTAACTCTAAAGTGTTATTTTACATGCACTTAAAATGAATAAAAGCCAACATTCACATTGTGGTTTTTTGTTACGCTTAGGGGCGACCAATGTCATGAC‑GGTGTAGGTGCGT‑TTACTGTCAGAAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAg < 1:260900/250‑1 (MQ=255) aGTTGATTAATTCTTTGAGGAACATGCATTTATGCATGCTGTTAAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGT‑TTACTGTCGTAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGAt < 1:39859/250‑1 (MQ=255) ggtttAATTTTTTGAGAAACATCCAGTTATGCATGTTGTTGAAAAAGAGGAAGATACTGACTAACTCAAAAGTGGTTTTTTCCATGCACTTACAATTGATTAAAGACAACTTTCAAAGTGTGTTTTTTTGTTACAAATGGGGGCGAGCAATTTCAGGAC‑AGTGTAGGTGCGG‑TTACTGTCGGAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATaa < 2:79464/246‑1 (MQ=255) ttCTTGGAGGAACATGCAGTTATGCATGTTGTTAAAAAAGAGAAAAATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATAAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGGGCGG‑TTACTGTCGTAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAac < 1:409692/250‑1 (MQ=255) tGAGGAACATGAAGTTATGCATGCTGTTGAAAAAGAGGAAGATACGGACTAACTCAAAAGGGGTATTTTACATGCATTTAAAATTAATTAAAGACAAAATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGAAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTAAAAAAAAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAacgcac < 1:390547/249‑1 (MQ=255) gAACATGCAGTTATGCATGCTGTTAAAAAAGAGGAAGATACGGACTAACTCAAAAGTGGTATTTTACATGCACTTAAAATTAATTAAAGACAACATTCAAAGTGTGTTTTTTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGGGTAGGTGCGG‑TTACTGTCGTAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGt < 1:413702/250‑1 (MQ=255) gTTAGGCATGCTGTTAAAAAAGAGGAAAATACTGAATAACTTAAAAGTGTTATTTTACATGCACTTACAATTGATAAAAGAAAATATCCACGGTGTGTTTTTTTGTTACACAGGGGGGCGAGCAAGTTCATGAA‑AGTGGGGGTGCGT‑TTACTGTCGAAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGc < 2:462516/250‑1 (MQ=255) catgtTGTTAAAAAAGAGAAAATTATTAATAAAATTAAAAGTGTTTTTTTAAATACTCTTAAAATTAATTAAGAAAAACTTCAACAGTGTTTTTTTTTTTCAAAAAGAGGGGGAAGAAATGTAAGAAC‑GGTGTTGG‑GCGGTTTCCGGTCGAAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTg < 2:200943/250‑1 (MQ=255) tACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTc > 1:184323/1‑250 (MQ=255) aCTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCt > 1:464079/1‑250 (MQ=255) tGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGt > 1:92286/1‑250 (MQ=255) ctAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGCAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTg > 2:484344/1‑249 (MQ=255) ctAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTg > 2:10216/1‑249 (MQ=255) tacttcctcTTAAAATTTATTAAAGACAACATCCACAGTGTGTTTTTTTTTTACAAATGGGGGCGAGCAATGTATTGCC‑GGTGTGGGTGCGT‑TTATTGTGGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGgctgct < 2:571277/241‑1 (MQ=255) aCATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTcc > 2:564910/1‑250 (MQ=255) cATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTccc > 2:154698/1‑250 (MQ=255) atttAAAATTAATAAAAGAAAACATTCAAGGTGGGTTTATTTGTTACACATGGGGGCGAGAAATGTAATGAC‑GGTGTAGGGGCGT‑TTATTGTCGTAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCaaa < 1:604798/248‑1 (MQ=255) cAATGGATTAAAGACAACATTCAGAGTTTGGTTTTTTGTTACACAGGGGGGCGGGAAATTACATAAC‑AGTGTGGGTGCGG‑TGCTTGTCGGAAAAAACAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTg < 2:127805/250‑1 (MQ=255) aaaTTAATAAAAGAAAAAATCCAAAGTGGGGTTATTTGTAACCAAAGGGGGGGAGAAATGTCA‑GACAAGTGTGGGGGGGG‑TTACTGTGGAAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCt < 1:230102/248‑1 (MQ=255) tGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAAc > 2:16218/1‑250 (MQ=255) ataaaaGAAAACATTCAAAGGGTGTTTATTTGTAACACATGGGGGCGAGAAATGTCATGAC‑GGTGTGGGTGGGG‑TTATTGTGTTAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACtg < 1:509165/247‑1 (MQ=255) ttAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACtgt > 1:461859/1‑250 (MQ=255) aaGAAAACATCCACGGGGTGTTTTTTTTTTCCAAAAGGGGGAGAAAAATGTCATGAC‑AGTATGGGGGGGT‑TTACTGTGTAAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGa < 2:404258/250‑1 (MQ=255) aGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGaaa > 1:515271/1‑250 (MQ=255) tgtttATTTGTTACAAATGGGGGCGAGCAATGTCATGAC‑AGGGTGGGTGCGG‑TTACTGTCGTAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCtt < 1:491116/247‑1 (MQ=255) tgGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCtt > 1:340864/1‑250 (MQ=255) aTTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGccc > 2:533778/1‑250 (MQ=255) aTTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGccc > 2:199078/1‑250 (MQ=255) tGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCg > 1:77591/1‑249 (MQ=255) acaaATGGGGGGGAGAATTGTCATGAA‑AGTTGAGGTGGGT‑TTACTGTCGTAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCgcagca < 1:149626/250‑1 (MQ=255) aGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAatat > 2:476899/1‑250 (MQ=255) aTGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATAtctct > 2:530405/1‑250 (MQ=255) tgccgtGAC‑GGGGTAGGTCCGG‑TTGCGGTGTTAAAAAACAATAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATAtctctc < 2:14261/245‑1 (MQ=255) tCAGGAC‑AGTGTAGGTGGGT‑TAACGGTGGAAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCt < 1:184875/250‑1 (MQ=255) aTGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTg > 1:416029/1‑249 (MQ=255) aGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGc > 1:259161/1‑250 (MQ=255) gTGCGT‑TTACGGTCGTAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCg < 1:516431/250‑1 (MQ=255) cgtttACTGCGGTAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGaa < 1:230963/247‑1 (MQ=255) gtttACTGTCGTAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAAc < 1:186480/248‑1 (MQ=255) ttACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAg > 2:573204/1‑250 (MQ=255) cggtcgaaaaaaaaaaaaaaAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCa < 1:221875/242‑1 (MQ=255) tCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCagag > 2:330360/1‑250 (MQ=255) ggaaaaaaaaaaaaaaaAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCagag < 2:386555/245‑1 (MQ=255) aaaCAAAAAAAACCCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAGCCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAGCGTGtt < 2:64438/250‑1 (MQ=255) | AAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATGAC‑AGTGTAGGTGCGG‑TTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAGCGTGTT > NZ_CP009273/4277399‑4277889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |