| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 937,169 | 0 | T | G | 38.3% | 78.7 / 16.8 | 47 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| Reads supporting (aligned to +/- strand): ref base T (0/29); new base G (18/0); total (18/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.19e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCGGTACGCTGGGCGGCACCATGACCCGCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATGAGAAAACCCTGCCAGCCAGTGCGCCGAAAAAT > NZ_CP009273/936920‑937416 | ccGGTACGCTGGGCGGCACCATGACCCGCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGt < 1:271333/250‑1 (MQ=255) cGCTAGGCGGCACCATGACCCGCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACtt < 1:274496/249‑1 (MQ=255) gCTGGGCGGCACCATGACCCGCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTAc < 2:258475/250‑1 (MQ=255) tGACCCGCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGc < 1:7133/250‑1 (MQ=255) cccGCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACg < 2:98775/250‑1 (MQ=255) ccGCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑c < 1:189102/250‑1 (MQ=255) gCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCa < 1:494772/250‑1 (MQ=255) gCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCAGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCa < 1:168921/250‑1 (MQ=255) cTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAg < 2:40557/250‑1 (MQ=255) gcgcgGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCg < 2:302770/250‑1 (MQ=255) gCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCcg < 2:314090/250‑1 (MQ=255) cggcTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGt < 2:401372/250‑1 (MQ=255) aCCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTGAACAAGCACG‑CCCGAAAACTAAAGCCCCCCAGATCATCATCGATCCCCGCCATACCGACA‑ACCggggcgggggcg > 1:467320/1‑249 (MQ=255) tACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCTTTAACAAGCACG‑CCCAAAAACTAAAGCCCCCCAGATCATCATCGATCCCCGCCTTACCCACA‑CCCGGGGCGGGGGCGGAGAT‑g > 1:523419/1‑250 (MQ=255) gACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGa < 1:611088/250‑1 (MQ=255) gACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGACTTACTATCTTTAACAGGCACG‑CCCGAAAACTAATGCCCCCCTGATCCTCATCGATCCGCGCTATACCGACA‑CCGGGGCCGGGCGCGAAGAT‑GA‑gg‑ggg > 1:390516/1‑249 (MQ=255) gACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGGTTTCTATCTTGAAAAAGCACG‑CCCGAAAAATAAAGCCCGCCCGATCATCATCCATCCCCGCCATACCCACACCCGGGGCCGGG‑GCGGAGAa‑ga‑ggg > 2:173153/1‑246 (MQ=255) gACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGGTTACTATATTTAAAAGGAACG‑CCCAAAAAATAAAGCCCGCGAGATCATCCTCGATCACCGCTATAACGACA‑CCGCCGGCGGGGGCGCAgag‑ga‑ggg > 2:323119/1‑246 (MQ=255) ctactCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGGTTACTTTCCTGTACAAGGCCG‑CCAGGAAACTAATTCCCGCATGGTTATTCTTGCTCCGCCCCAGTCCGACACCCGGTGCCGGG‑GCGGGCAT‑GA‑GT‑gggcc > 2:27618/1‑247 (MQ=255) ccGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCg < 2:435949/250‑1 (MQ=255) gCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACa < 2:307802/249‑1 (MQ=255) aGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTTAAAAGGCACG‑CCCGAAAACTAATGCCCGCATGATTATCCTCCATCCGCGCTATACCCACA‑CCCGGGGCGGGGGGGGAGAT‑GA‑GTGGGATCCC‑CTTTGTCCGGGGAAAGAAGcc > 1:69884/1‑250 (MQ=255) tcccTACGGCGGCTGGGCAAATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTa < 2:137030/246‑1 (MQ=255) ggcggcTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGACTTACTATCTTGAACAGGCACG‑CCAGAAAACTAATGCCCGCATGATCATCATCGATCCCCGCTATACCGACA‑CCGGGGCCGGGCGCGAAGAT‑GA‑GG‑GGATCCCTATTCGTCCGGGGACAGAAGCCGCCCTGGTTAACGGGCTgg > 1:579498/1‑250 (MQ=255) cTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTAc < 2:557648/250‑1 (MQ=255) cTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTAc < 1:488973/250‑1 (MQ=255) ggCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACg < 1:564524/248‑1 (MQ=255) cAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTATTTCTTTAACAGGCACG‑CCAGAAAACTAATTCCCGCCTGATCATCATCGAACCGCGCCATACCCGCA‑CCCGGGGCGGGGGGGGAGAA‑GAGGG‑GGACCCCTATT‑GTCCGGGGAAAGAAGCCGCCCTGGGTAAAGGGCTGGGGTAAGGCAt > 2:352074/1‑250 (MQ=255) tGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATc < 2:449197/250‑1 (MQ=255) aCAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGa < 1:326753/250‑1 (MQ=255) aCAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGGTTACTATCTTTGACAGACACG‑CCAGAAAACTAATGGCCGCCAGATCATCATCGAACCGCCCTCTACCGACA‑CCGGTGCCGGGCGGGAAGATAGG‑GG‑GGATCCCCTTCCTTCTGGGAA‑AAATGCCGCCCTGGGTAACGGGCCGGCGTAAGCTATGAACACTg > 2:401115/1‑249 (MQ=255) ggATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCtggtg < 1:271403/250‑1 (MQ=255) tCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCa < 2:473556/250‑1 (MQ=255) tAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCTTTAAAAAGCACG‑CCCGAAAACTAATGCCCGCACGATCATCATCGCTCCCCGCCATACCGACA‑CCGGGGGCCGGCGCGGAGAT‑GA‑GG‑GGATCCCCCTTCGTCCGGGGACCGGTGCCGCCCCGGGTAACGGGCTGGCGGTCGTCCTTATGCCTGAAAAACTGGTGGATCCGGCCTTCCTc > 2:27526/1‑250 (MQ=255) gTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAatat < 1:526017/249‑1 (MQ=255) gTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTTAACAGGCACG‑CCAGAAATCTAATGCCCCCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGGGCCGGGGGCGAAGAT‑GA‑GT‑GGGGCCCTATTCGTCCGGGGACAGATGCCGCACTGGTTAAAGGTCTGGCGGACGGCATGATCACTGAAAAACTGGTGGATCAGGCATTCCTCGATAAATAtt > 1:377760/1‑250 (MQ=255) tGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTGAACAGGCACG‑CCCGAAATCTAATGCCCGCCTGATCCTCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGGAGAT‑GA‑GT‑GGGTCCCTCTTCGTCCGGGGACAGATGCCGCCCTGGTTTACGGTCTGGCGTACGGCATGATCACTGAAAAACTGGTGGATCAGGCATTTCTCGATAAATATTg > 2:48738/1‑250 (MQ=255) taataaCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGACTTACTATCTTTAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCCACA‑CCGGGGCCGGGCGCGAAGAT‑GA‑GT‑GGGTCCCCATTCGTCCGGGGAAAGATGCCGCCCTGGTTAACGGTCTGGCGGACGGCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTT‑CGTTGGCTAc > 1:195124/1‑250 (MQ=255) aCCCTGGCGAAACGCGAATGAGTGGCGGTTGGGGGACTTACTATCTTTAACAGGGACGCCCCGAAAT‑TAATGGCCGCCAGGTTCTTATCGGTTCGCGCTATACCGGCA‑CCGGTGGCGGGCGGGGAGAA‑GA‑GG‑GGGGACCTCTTTGTTCCGGAACAAGAGGCGCCCCGGGTAACGGTCTGGCGGTCCTCATGATCCATGAAAAACATGTTGGTCAAGCATTTCTCCATAAATATTGTCGTTggtacggtg > 2:534962/1‑242 (MQ=255) aCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATg < 2:377463/249‑1 (MQ=255) cTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGATTACTATCTTTAAAAAGCACG‑CCAGAAAACTAATGGCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCCGTGCCGGGCGCGAAGAT‑GA‑GT‑GGGGCCCCATTCGTCCGGGAAAAGAAGCCGCCCTGGGTAACGGGCTGGGGGACGGCATGATCACTGAAAAACCGGTGGGTCAGGGATTCCTCGGTAAATATTG‑CGGTGGCTACGATgaga > 2:183987/1‑249 (MQ=255) gAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCTTTAACAAGGACG‑CCAGAAAACTAATGCCCGCATGATCATCATCGATCCGCGCTATAACGACC‑CCCGTGCCGGGCGCGAAGAT‑GA‑GG‑GGGTCCCTATTCGTCCGGGGACAGATGCCGCACTGGGTAAAGGGCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATGAGAAAAccc > 2:596699/1‑250 (MQ=255) gAAACGCGAATGAGTGGCGGTGGGGGGACTTACTATCTTGAAAAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCCATTCGTCCGAGAACAGATGCCGCCCTGGGTAACGGTCTGGCGGACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTT‑CGGTGGCTACGATGAGAAAAacc > 2:212791/1‑250 (MQ=255) aGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATGAGAAAACCCTGCCAGCCAGt < 2:577971/249‑1 (MQ=255) aGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATGAGAAAACCCTGCCAGCCAGTg < 2:467320/250‑1 (MQ=255) cGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATGAGAAAACCCTGCCAGCCAGTGCGCCg < 1:60794/250‑1 (MQ=255) gTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATGAGAAAACCCTGCCAGCCAGTGCGCCGaa < 2:306070/250‑1 (MQ=255) ggTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATGAGAAAACCCTGCCAGCCAGTGCGCCGAAAAAt < 1:144109/250‑1 (MQ=255) | CCGGTACGCTGGGCGGCACCATGACCCGCTCCTGGCCGCCGGGAAATACCCTGGTCGCGCGGCTGATGAACTGCTGCGGCGGCTATCTGAACCATTACGGCGACTACTCCTCCGCGCAAATTGCGGAAGGTTTGAACTATACCTACGGCGGCTGGGCAGATGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACG‑CCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACA‑CCGGTGCCGGGCGCGAAGAT‑GA‑GT‑GGATCCCTATTCGTCCGGGAACAGATGCCGCACTGGTTAACGGTCTGGCGTACGTCATGATCACTGAAAACCTGGTGGATCAGGCATTCCTCGATAAATATTG‑CGTTGGCTACGATGAGAAAACCCTGCCAGCCAGTGCGCCGAAAAAT > NZ_CP009273/936920‑937416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |