| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,217,689 | 0 | G | A | 39.1% | 73.3 / 12.5 | 46 | pseudogene (2228/2243 nt) | BW25113_RS25990 | autotransporter outer membrane beta‑barrel domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (26/2); new base A (0/18); total (26/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.74e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGCATTACCCATTACCG > NZ_CP009273/1217444‑1217927 | ggAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAat < 1:483767/250‑1 (MQ=255) gagaAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAata > 2:436414/1‑250 (MQ=255) aaaaaCAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAatat > 1:36192/1‑248 (MQ=255) cACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCccgccg > 2:433197/1‑250 (MQ=255) aCGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGt > 1:547728/1‑250 (MQ=255) ttGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAAc > 2:433112/1‑250 (MQ=255) tgtaaaaaTGAACTGGACCAATAAAAGAAAAGTTTTTGCTGTCAAAATGAACGGTGAGAAAGT‑GAAAAAGGAGGGGGGGATAATTTGGGGAAAAATAAACTGTGGCGAAAAGGGAACCCAAAACCCGGCGGCCGGCGTGGGGGGAA‑TGGGGGCGTGCGGTGGGTTAATAATGCCAAAAATGACCCC‑GCAGTAATGGGGGGCCTA‑AAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTa < 2:191737/244‑1 (MQ=255) gacccATAAAAGAAAAGATTTTGCTGTCTAAATGAACGGTGTAAAAGTCGAAAAAGAGGGGGCGAGTAATTGGGGGAAAATAAAACT‑GGGCGTAAATGGCAACCTGAACCCAGCGGCCAGCGTCGGGGGAA‑TGGGGGCGTGCAGCGGGGTAAAAATGGCTAAAAGACCACC‑GCAGTGATGGTGGGCCAA‑AAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTAc < 1:205958/247‑1 (MQ=255) aaaaGTTTTTGTTGTTTAAAGAAATGGTGAAAAAGTCAAAAAAGTGGGGGGGAGTAATTTGGGGTAAATAAAACT‑TGGTGAAAATGCAACCCGGAACCCGGGGGCCGGCGTGGGGGGAG‑TGGGGGCGGGCGGTGGGGTAATAAGGGCTACAATGCCCCC‑GAGGTGATGGGGGCCTTA‑AAATATATGTTCTGCCCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAAtatt < 2:392883/249‑1 (MQ=255) aTTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTAtttt > 2:561489/1‑250 (MQ=255) tttGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTAtttttt > 1:54065/1‑250 (MQ=255) tGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGa > 1:464036/1‑250 (MQ=255) cAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCa > 1:38460/1‑250 (MQ=255) aTGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACg > 1:110426/1‑250 (MQ=255) tgtgAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGgtgt > 2:404868/1‑250 (MQ=255) tgAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGtca > 2:188405/1‑250 (MQ=255) aGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCaa > 1:80714/1‑250 (MQ=255) aaCAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAACTATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGcc > 2:398991/1‑250 (MQ=255) aggtgggggAGATTAATTTGGGGGAAATTAAACT‑GGGCGAAAATGCAAACCTGAACCCAGCGGCCAGCGTCGGGGGAA‑GGGGGGCGTGCAGGTGGGTGATAAGGTCTACAATGACCCC‑GCAGTGAGGGTGGGCCTA‑AAATATATTTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTg < 2:453816/245‑1 (MQ=255) aggagggggggAGTATTTGGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAAGCCAGCGGCCAGCGTGTGGGGAA‑GGGGGGCGTGCGGCTGGGTGATAATGGCTACAATCCCCCC‑GCAGTGATGGTGGTCCTA‑AAATATATGTTCTTCCCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTg < 2:53142/245‑1 (MQ=255) cGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAg > 1:192363/1‑249 (MQ=255) gAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCa > 1:473952/1‑250 (MQ=255) tGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCggg > 2:377181/1‑250 (MQ=255) aaaCT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAgcgc > 1:323740/1‑249 (MQ=255) aaCT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCa > 2:299927/1‑249 (MQ=255) cT‑TGGCGAAAAGCACAACCAGACTCCAGCGGCCCGTGTGGGGGGAA‑TGTGGGGGTGCGGGTGGGTAATAAGGGCTAAAATGACCCG‑GCAGTGGTGGGGGGCGTA‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAAc < 2:43056/250‑1 (MQ=255) tggttaaaaGGGCAACCGGAACCGAGGGGCCGGTGGCGGGGGAA‑TGGGGGGGTGCAGGGGGTTAAAAATGGCTAAAAAGACCCC‑GGAGTGATGGGGGGACAA‑AAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCt < 2:251114/244‑1 (MQ=255) gCGTAAATGGCACCCTAAACCCAGCGGCCAGCGTCTGGGGAA‑GGGGGGCGTGCAGTGGGGTAATAAGGGCTACAATGACCCC‑GCAGTGAGGGTGGGCCTA‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGa < 1:520549/250‑1 (MQ=255) cggaaaaTGGCACCCGGCAGCCGGCGGCCTGCGTGTGGGGAA‑GGGGGGCGGGCAGGTGGTTTATAATGCAAACAAGCCCCCC‑GAGGGGTTGGT‑GGCCTGAAAATATAGTTCCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGa < 2:347375/246‑1 (MQ=255) gTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGAtt > 1:428830/1‑250 (MQ=255) aaaTGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGAtt > 1:329765/1‑248 (MQ=255) aaTGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAg > 2:382859/1‑250 (MQ=255) ctaaacccggcgcCCAGCTTCGGGGGAA‑TGGGGGGGTGCAGGTGGGTGAAAATGGCTACAATGACCCC‑GAAGTGAGGGGGGGCCTA‑AAATATAATTTCGGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTAc < 1:591268/241‑1 (MQ=255) tGGGGAAGTGGGGGGGTG‑AGGTGGGTGATAAAGGCCAAAAAGACCCCGGGGGTGTGGGGGGGCTTA‑AAATAAAGTTTTTGTCCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCg < 2:59994/250‑1 (MQ=255) gggggAA‑TGGGGGGGGGCAGGTGGTGTATAATGGCTACAATGACCCC‑GCAGTGGTGGGGGGCTTA‑AAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCTTGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCg < 2:547728/248‑1 (MQ=255) ggCGTGCAGCGGGGTTAAAAGGTCTACAATGACCCC‑GCGTTGATGGTGGGCGAA‑AAATTTATTTTCTGTTCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCaa < 1:56803/250‑1 (MQ=255) gggcggttGGTTGATAAGGGCAACAAGACCCCC‑GAGGTGATGGTGGCCATA‑AAAAATAATTTCGCACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAAttt < 2:569185/243‑1 (MQ=255) gTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAAttt > 2:602791/1‑250 (MQ=255) ggTGATAAGGGCTACAATGACACC‑GCGGTGATGGGGGGCCTA‑AAATAAAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCa < 1:10659/249‑1 (MQ=255) aTAGTGGCTACAATGACCCC‑GCAGTTGTGGTGGGCATA‑AAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCt < 1:436414/250‑1 (MQ=255) aaTGGCTACAATGCCCCC‑GCAGTGATGGGGGGCCTA‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTgg < 1:172121/250‑1 (MQ=255) gCTACAATGACCCC‑GCAGTGATGGGGGGCCAA‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAAc < 1:125706/250‑1 (MQ=255) cAATGCCCCC‑GCGGTGATGGTGGCCAAA‑AAATATATTTTCTAGCCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTg < 1:262213/250‑1 (MQ=255) acC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcattac > 2:38562/1‑250 (MQ=255) aGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcattacccat > 1:33013/1‑249 (MQ=255) aTGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGCATTACCCATTACCg > 2:184438/1‑250 (MQ=255) | GGAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACT‑TGGCGTAAATGGCAACCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACC‑GCAGTGATGGTGGGCCTG‑AAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGCATTACCCATTACCG > NZ_CP009273/1217444‑1217927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |