| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 43.1% | 60.3 / 37.2 | 65 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (1/36); new base T (28/0); total (29/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.48e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AACTCCCGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACA > NZ_CP009273/3199549‑3200041 | aaCTCCCGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGa < 1:207737/250‑1 (MQ=255) cGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGG‑GGAATTTTTTCAaaaaaa > 1:621416/1‑249 (MQ=255) tgAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACaaaa < 1:518994/250‑1 (MQ=255) aCGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACt < 1:580780/250‑1 (MQ=255) ttCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAAATTTTTCCGACAAAAAAAAAAAATGGAgg > 1:485173/1‑249 (MQ=255) cTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGtt < 1:10315/249‑1 (MQ=255) aCCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TTTATTTTTTCCTTCCAATTCCAAAACTTGAGTTTcccttttt > 1:281216/1‑244 (MQ=255) ccTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCAtga‑tga < 1:219436/250‑1 (MQ=255) tGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑CGGATTTTTTCTGAAAAAAAAAAAAAATGGAGTTTGCCTGA‑TTAGCGAAAGgaaa > 2:236883/1‑248 (MQ=255) gCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCGATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGtaataa < 2:216306/249‑1 (MQ=255) tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGCATATTTTCATACAAATACAACAACAGAAGTTGCCCTTG‑TGAGCGAAAGgaataaaa > 2:472695/1‑247 (MQ=255) aaGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGACAAAAAAAAAAAATGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑aa > 1:427380/1‑249 (MQ=255) cTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTg < 1:11442/250‑1 (MQ=255) aTTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCGCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTTACACAAAAAAAAAAAAAGGAGTTTGCATGT‑TGAGGGAAAGTAATAAAC‑AACAGGCAgaga > 2:241571/1‑249 (MQ=255) tCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGAAAAATACAAAAAATGGAGTTGCCATGA‑TGAGCGGAAGTAAAAAAA‑AACAAGGAGTGAAt > 1:661343/1‑249 (MQ=255) gCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGt < 1:394903/250‑1 (MQ=255) aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTg < 1:437743/250‑1 (MQ=255) aTCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTTGAATTTTTTTA‑ACAAAAAAAAAAAATCGAGGTGTCCTTA‑TGGGGGGAAGAAATAAAC‑AAAAAGCAGGGGATAAGTTGAcgataagtg > 2:133138/1‑242 (MQ=255) aGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCATACAAATACAAAAAATTGAGTTGCCATGA‑TTAGAGGAAGTAATAAAC‑AAAAAGCAGGGAATAAATTGAAAGAGATTGTTGCt > 1:96777/1‑249 (MQ=255) gtgATAAGCGCAGTTTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTTGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑AT‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACt < 2:20913/249‑1 (MQ=255) gATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTGACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCTGACAAAAAAAAAAAATGGAGTTGGCCTGA‑TGGGCGAAAGAAATAAAA‑AAAAAGAAAGGAATAAATTGGAAGAGATTGTCGCCAACtttt > 2:520733/1‑249 (MQ=255) gcgcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGACAAAAACAAAAACAGGAGTTGGCATGA‑TGAGCGAAAAAAATAAAC‑AAAAAGCAGAGAATAAATTGAAAGAGATTGTCGCTAACTTT‑atcccc > 2:506859/1‑245 (MQ=255) cgcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCa < 1:383402/250‑1 (MQ=255) gcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCAt < 1:486140/250‑1 (MQ=255) gtgtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGGATTTTTTTTGAAAAAAACAAAAAATGGAGGTGGCGTGG‑GGAGGGGAAATAAAAAAA‑AAAAAGCAGGGGGAAAGATGTCAGAGATTGTTGCTTACTTT‑AATGCCacagt > 2:620881/1‑246 (MQ=255) cGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGACAAAAAAAAAAAATGGAGTTGCCATGA‑TGAGCGAAAGTAATAAAC‑AAAAAGGAGTGAAAAAATTGACAGAGATTGTCGCTAACTTT‑TCCCCCATG‑Attttttacc > 1:534690/1‑244 (MQ=255) aaaCATTGCCATTCCCTGCTCGGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAAt < 1:365916/250‑1 (MQ=255) cATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑CGAAATTTTTTCGACCAAAAAAAAAAATGTGGTTTGGCTGA‑TGTGCGAAAAAAAAAAACAAAAAGGGAG‑GAAAAAGTTTACAAAGAAGTTGTCTAAATTT‑ATCCCCAAG‑ATTTTTATCCGAATgac > 2:678740/1‑248 (MQ=255) cATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGAAAAATACAAAAACGGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCtgatga < 1:264362/250‑1 (MQ=255) cATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGAAAAATACAAAAACGGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCtgatga < 1:400507/250‑1 (MQ=255) tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCCCACCAATACAAAAACTTGAGTTGCCATGT‑TGAGCGAAAGTAATAAAC‑AACCAGCAGTGGATAAATTTACAGAGATTTTTGCTTACTTT‑ACCCCCCTG‑ATTTTTACCCCAATGCCTTATGACgtgggg > 1:79417/1‑248 (MQ=255) tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TTAATTTTTTTAGACAAAAAAAAAAAATGGAGGTGTCATGA‑TGAGGGCAAGGAAAAAAC‑AACAGGCAGTGAATAAGTTGAGAGAGATTGTTGCTAAATTT‑TCCGCCATG‑ATTTTTTCCCGCACGCCtgatgaagggggggg > 2:315577/1‑240 (MQ=255) ctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGGCATGA‑TGAGGGAAAGTAATAAAA‑AAAAAGCAGGGAAAAAGTTGACAGAGATTGTCGCTAACTTT‑ACCCCCCTG‑ATTTTTACCCCAAAGCCTGATGACGtggggggt > 1:320372/1‑247 (MQ=255) tGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGACAAAAAAAAAAAATGGAGGTGCCATGA‑TGAGGGGAAGAAAAAAAC‑AACAAGCAGGGAAAAAAATGACAGAGAATGTCGCCAAACTT‑TCCCCCCCG‑ATTTCTCCCCCAACGCCCCCTGACGTGGGGGGTa > 2:452030/1‑249 (MQ=255) cattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGAAAAATACAAAAACTGGATTTGCCATGA‑TGAGCAAAAGTAATAAGC‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGc < 1:102173/249‑1 (MQ=255) tcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑GGAAATTTTTCCGACAAAAAAAAAAAATGGAGTTGGCATGATTGGGGGAAAG‑AATAAAA‑AAAAAGCAGAGAAAAAATTGAAAGAGAATGGCGCCAACTTT‑TTCGCCATG‑ATTTTTACCCCAAACCACGGTGAAGGGGGGGGTAAACTaaaaaaaccaa > 2:100464/1‑242 (MQ=255) tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTTAGACAAAAAAAAAAAATAGAGTTTGCATGA‑TGAGCGGAAGGAATAAAA‑AACAAGCAAGGGATAAATTGGCAGAGATTGTTGCTAACTTTAACCCCCAGC‑ATTTTTCCCCG‑ATAGCTTATTACGTGGTGGGTAaaaaaaaaaaaccaaaag > 2:279239/1‑239 (MQ=255) ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAt < 1:237444/249‑1 (MQ=255) ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAACCCACATTTTTAGTGGTAGTTTGGGGC‑GG‑TGAATTTTCCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAACC‑AACAGGCAGTAAAAAGGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAt < 2:490012/249‑1 (MQ=255) cgcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGACAAAAACAAAAAATGGAGTTTCCATGA‑TGAGCGAAAGTAATAAAC‑AAAAAGCAGTGAATAAGTTTACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTTTACCCCAAAGCCTGATGACGTGGGGGGTAAAATAAAACAACTAAAAGATGccc > 1:516841/1‑248 (MQ=255) gcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGGGGC‑GG‑TAAATTTTCCCAGAAAAATAAAAAAACGGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGaa < 1:376613/250‑1 (MQ=255) tGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCCGAAAAATACAAAAAATGGGGTTGGCCTGA‑TTAGGGGAAGGAATAAAC‑AACAAGCCGGGAATAAATTGACAGAGATTTTCGCTAACTTT‑TACGCCATG‑ATTTTTACCCGAAAGCCTGATGACGTGGGGGGTAAACTAAAAAAGCTAAAGGATGCCGaaaagg > 1:235571/1‑247 (MQ=255) tGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCCAACAAATAAAAAAAATTGGGTTGGCATGA‑TTAGCGGAAAGAATAAAC‑AAAAAGCAGGGAATAAGGTGAAAGAAAATTTCGCTAAATTT‑TACGCCATGAATTTTTACCCAAATGCTTATGGACTGGGTGG‑TAAAATAAAAAAACTAAAAGGTGACGAAAcag > 1:137795/1‑248 (MQ=255) gATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGGAATTTTTTAAAAAAATACAAAAAATGGAGGTGGTATGA‑TTAGGGGAAGTAATAAAA‑AAAAAGGAGGGAAAAAATTGATAAAGAATTTCGCTAACTTT‑TACGCCCTC‑ATTTTTAACCCCAAGCCCGATGACGTGGTGGGTAAAATAAAAAAACAAAAAGAAGCCGaaaagcc > 2:193172/1‑246 (MQ=255) gAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGACAAAAAAAAAAAAAGGAGTTGGCCTGA‑TGAGGGAAAGAAAAAAAC‑AAAAAGCAGGGAATAAATTGACAGAGAATGTCGCTAAATTT‑ACCGCCATG‑ATTTTTACCCGAAAGACTGATGACGTGGGGGGTAAAATAAAAAAACTAAAAGATGCCGAAAAGTCGTCGATg > 1:594407/1‑250 (MQ=255) cTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGA‑TGAGCGAAAGTAATAAAC‑AACAGGCAGGGAAAAAATTGACAGAGAATGTTGCTAACTTT‑TTCGCCATG‑ATTTTTACCCCAAAGCCTGATGACGGGGGGGGTAAACTAAAAAAGCTAAAGGATGCCGAAACGTCGTCGATgggg > 1:678666/1‑250 (MQ=255) gTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAAATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa < 1:635222/249‑1 (MQ=255) ttAATTACATTTTCGCTGTGGAAAAAAATATAAAACCACATTTATAGTGGTAGTTTGGGGC‑GT‑TGAATTTTTCCAAACAAATACAAAAACTGGCTTTTCCAGGA‑GGAGCAAAATAAATAAGC‑AACGGGCAGTGAACAGTTTAAAGGAGATTGTCGTTATCTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGaa < 2:594513/249‑1 (MQ=255) aaTTACATATTCACGGGGGCAAAAAAAATAAAACCACATATTTAGTGGTAGTTTGGGGC‑GG‑GGAATTTTCCCAAAAAAAAAAAAAAGCTGGAGTTGCAATGA‑TGAGCGAAAGTAAAAAGC‑AACAGGCAGTAAATAAGTTGACAGAGATTGCCGATAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGaaaa < 2:637323/249‑1 (MQ=255) atatTCACGGAGACAAAAAATAAAAAACAACATTTTTAGTGGTAGTTTGTGGC‑GG‑TAAATTTTTCCAGAAAAAAAAAAAAACTGGAGTTGCAATGA‑TGAGCAAAAATAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTa < 2:79417/250‑1 (MQ=255) atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAAATTTTTCAGACAAAAAAAAAAAATTGGGTTTGCATGA‑TGAGCGAAAGTAATAAGC‑AAAAAGCAAGGAATAAGTTGAAAGAGATTGTCGCTAACTTT‑TCCGCCATG‑ATTTTTTACCGAAAGCCTGATGACGTGGGGGATAAAATAAAAAAAATCAAGGATGGCGAAAAATCGTCGTGGGGGGAAATTAATTAcc > 2:434564/1‑250 (MQ=255) cACGGTGGCAAAAAATATAAACCCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATAAAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCAt < 1:416164/249‑1 (MQ=255) ccGGTGTCAAAAAATATAAACCCCCATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCGAGACAAATACAAAAGCTGGAGTTGCCATGA‑TGAGCGAAAGTAAAAATC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATAc < 1:620881/249‑1 (MQ=255) aCGGTGGCAAAAAATATAAAACCAAATTTTTAGTGGTAGTTTGTGGC‑GG‑TAAATTTTTCCAAACAAATACAAAAACGGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAATTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa < 2:676564/249‑1 (MQ=255) ttGGAAAAAAATAAAAACCCACATTTTAAGTGGGAGTTTGTGGC‑GG‑TGAATTTTCCAAGAAAAATAAAAAACCGGGAGTGGCCATGA‑TGAGCAAAAATAATAACC‑AACAGGCAGTAAAAAATTTGAAAGAGATTGTCGCTAATTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGAt < 2:481426/249‑1 (MQ=255) gTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGAt < 1:444103/250‑1 (MQ=255) tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TAAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATg < 1:120152/250‑1 (MQ=255) aaacCCAAATTTTTAGTGGTAGTTGGTGGC‑GT‑GGAATTTTTCAAAAAAAAAACAAAAACTGAGGTTGCCATGA‑GGAGAAAAATTAAAAACA‑AAAAGGAAGTAAAAAAGTTAAAAGGGATTGTCGCAAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGc < 2:337248/250‑1 (MQ=255) aaCCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGAAAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCaa < 2:404518/250‑1 (MQ=255) aCCAAATTTGAAGTGGTAGTTTGTGGC‑GG‑TGAATTTTACAAGAAAAAAAAAAAAAGGGGAGTTGCAATGA‑TGAGAGAAAGAAATAAGC‑ACAAGGCAGTAAATAAGTTGACAGAGTTTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCaaa < 2:666009/250‑1 (MQ=255) ccACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGATTTTTTCCAGAAAAAAAAAAAAACTGGAGTTGCCATGA‑TGAGCAAAAGTAATAAGC‑AACAGGCAGTAAATAAGTTGACAGAGACTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCaaaa < 1:435959/250‑1 (MQ=255) gTTTGTGGC‑GG‑TGAATTTTTCCAGAAAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATc < 1:359128/250‑1 (MQ=255) aTTTTTCAAAAAAAAAAAAAAAACGGGAGTTGCCATGA‑TGAGAGAAAGAAAAAAGC‑AACAGGCAGTGAATAAGTTGACAGGGATTGGCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAg < 2:602184/250‑1 (MQ=255) ttCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGaca > 2:235268/1‑250 (MQ=255) tCCAGACAAATAAAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGaca < 1:241571/249‑1 (MQ=255) | AACTCCCGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GG‑TGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGA‑TGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATG‑ATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACA > NZ_CP009273/3199549‑3200041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |