| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,009,475 | 0 | A | G | 37.5% | 111.3 / 21.9 | 66 | E254G (GAA→GGA) | pqiB | intermembrane transport protein PqiB |
| Reads supporting (aligned to +/- strand): ref base A (5/35); new base G (24/0); total (31/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.74e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGAGATCCGGTGCTGTTCCGTGGCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGACATTTAACGATGATTACCGTATTCCGGT > NZ_CP009273/1009230‑1009724 | aGGAGATCCGGTGCTGTTCCGTGGCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGCGTCCGCCTTTA‑TGTGCCGGGAGGt > 1:9089/1‑250 (MQ=255) agaTCCGGTGCTGTTCCGTGGCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑Tg < 1:518530/250‑1 (MQ=255) tCCGGTGCTGTTCCGTGGCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGGCAGCTTTTATTGTGCGGGAgggctgggt > 1:19066/1‑244 (MQ=255) cTGTTCCGTGGCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAggg < 1:553140/249‑1 (MQ=255) cTGTTCCGTGGCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGGAAGGTTTGG‑TTTGCCGGGAGGGCATGGT‑TTTAggg > 2:608758/1‑250 (MQ=255) tGTTCCGTGGCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGGCAGCTTTTT‑TTTGCCGGGAGGGC‑TGGA‑TTTAggg > 1:547725/1‑248 (MQ=255) gCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑gg < 2:22294/249‑1 (MQ=255) gCTATCGGGTAGGTTCGGTTGAAACCAGCACCGTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGc < 2:271154/250‑1 (MQ=255) tATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTTA‑TGTGCCGGGAGGGC‑TGGG‑TTTTGGGGAggccgggggac > 1:647768/1‑240 (MQ=255) gggTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGa < 1:596607/249‑1 (MQ=255) tAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAAc < 1:118848/250‑1 (MQ=255) ggTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTTA‑TGTGGCGGGAGGGC‑TGGG‑TTTTTGGGAGCCAGT‑GGGACCGAAAACaa > 1:311234/1‑249 (MQ=255) gTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCg < 2:563809/250‑1 (MQ=255) gAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTTGtt < 1:614065/249‑1 (MQ=255) gAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGtt < 1:614042/249‑1 (MQ=255) aaCCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTg < 1:442276/250‑1 (MQ=255) ccAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTTA‑TGTGGCGGGAGGGC‑TGGG‑TTTTGGGGAGGCAGT‑GGGACCGAAAAAAGCTtttgttttgtt > 1:313284/1‑249 (MQ=255) cAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCCGCTTTTA‑TGTTGCGGGAGGGC‑TGGG‑TTTTGGGGAGCCAGG‑GGCACCGGAAACAACCTTCGTTTTTTat > 1:689857/1‑250 (MQ=255) ccTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTGAGCTTTTT‑TGTGGCGGGGAGGA‑TGGG‑TTTTTGGGAGCCCGC‑GGGGCCCAAAACAACCTTCGTTTTGttttttga > 2:379356/1‑243 (MQ=255) cGAGACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCa < 2:103230/249‑1 (MQ=255) aTACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGC‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCagaa < 2:186127/250‑1 (MQ=255) acacAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTGGGGGTTGA‑TGATGCGGGAGGGC‑TGGG‑TTTAGGGGGGCCAGA‑GGCGCAGAGAACAACTTTCATTTTGTCTtatgatgcgaa > 2:597002/1‑243 (MQ=255) caAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGGAGGGC‑TGGG‑TTTAGGGGAGCCAGTGGGCCCCGAAAA‑AGCTTTCGTTTTTTTTGATTATAAGAAGAG‑Ca > 1:431163/1‑250 (MQ=255) caAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑Ca < 1:174499/250‑1 (MQ=255) aaaCGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGGTTTGT‑TGTGTCGGGAGGAC‑CGGA‑GTTTGGGGAGCCAGT‑GGGACCGGAAAAACCTTTCGTTTTTTATTGTGAACAGAAGAG‑GAtt > 2:391861/1‑249 (MQ=255) cAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCCGCTTTTT‑TGTGCCGGGAGGGC‑TGGG‑TTTTGGGCAGCCAGT‑GGCACCGAAAACAGCTTTTGGTTTTTATGATGATTAGAAGAG‑GATTTAGGAt > 1:5571/1‑250 (MQ=255) cAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGAt < 2:366481/250‑1 (MQ=255) atatCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTc < 2:192061/250‑1 (MQ=255) aGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTg < 1:328488/249‑1 (MQ=255) aaCTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGa < 2:516327/250‑1 (MQ=255) tgcatcaATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAGCGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATcac < 2:581043/247‑1 (MQ=255) cACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATc < 2:329265/249‑1 (MQ=255) cACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCt < 2:515056/250‑1 (MQ=255) aCCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTg < 1:613508/250‑1 (MQ=255) aTGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGt < 2:578940/249‑1 (MQ=255) gACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGCGGGTGT‑AGCTTTGG‑TGTGGCGGGAAGGC‑TGGA‑GTTAGGGGAGCCAGG‑GGGGCCGGAAACCACGTTTGGTTTTTTTGGTGATCAGAAGAG‑CATCTCGGTTACGTTGTAGACCACGCACCATGA‑TTATATGATGtttt > 2:111743/1‑248 (MQ=255) aCTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTTA‑TGTGCCGGGAGGGC‑TGGG‑TTTTGGGGAGCCAGT‑GGCACCGGAAAAAGCTTTTGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTTCAACGATCACATTGA‑TTATTTGATGttttttta > 1:654642/1‑247 (MQ=255) aCTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTaaa < 2:659913/250‑1 (MQ=255) tGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑CGTGTCAGCTTTGA‑TGTGCCGGCAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGACAACAGCTTTCGTTTTGTATGCTGTTCAGAACAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGCTGTTCTTTAAAgc > 2:261774/1‑249 (MQ=255) tGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTc < 2:207165/250‑1 (MQ=255) ccAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGt < 1:77634/250‑1 (MQ=255) caacaaTGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTa < 1:639961/250‑1 (MQ=255) ttCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGCGGGGGTCGGCTTGGT‑GGTGCCGG‑GGGGA‑TGGG‑TTTTGGGGAGCGCGG‑GGGACCGGAAACAGCTTTCGGTTTGTGTTATGGATAGAAGAGCCATTAGGGATTGGTTGT‑CACCGATCAAATTTATTTTTTTGAGTTTTTTTAAAAATTC‑GTAAGCGGtgt > 2:119579/1‑248 (MQ=255) aaaGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTTT‑TGTGCCGGGGGGGC‑TGGG‑TTTATGGGGGCCAGG‑GGCACCGAAAACAGCTTTCGTTTTTTTTTATTATCAGAAAAG‑AATTTAGGATTCGTTGTTCACCGATCACACTTA‑TTTTTTGATTTTCTTTTAAGATTTTGTAAGCGGGCTTCGAACCgggg > 2:630723/1‑249 (MQ=255) aaGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTTA‑TGTGGCGGGAGGGC‑TGGG‑TTTTGGGGAGCCAGT‑GGCACCGAAAACAGCTTTTGTTTTGTATGATGATTAGAAGAG‑CATTCCGGATTCGTTGTACAACGATCCCATTTA‑TTATCTGATGTTCTTTTAAGATTCGGGACGCGGGCTGC‑AACCGGGGGc > 1:439216/1‑250 (MQ=255) aGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGGCAGCTTTGT‑TGTGGCGGAAGGGC‑TGGG‑TGTTGGGCAGGCAGG‑GGGACCGGAAACAACCTTCCTTTTGTTTGATGATCTGAAGAG‑GATTTAAGATTCGTTTTACACCGATCACATTGA‑TTATCTTGTGTTCTTTTTAGATTTGGGACGCGGGCTGC‑AAACGGGAGGTCCgg > 2:374531/1‑250 (MQ=255) gTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCCGCTTTTA‑TGTGGCGGGAGGGC‑TGGG‑TTTTGGGGAGCCCGT‑GGGGCCGAAAAAAGCCTTCGTTTTTTTTGTTGATCAGAAAAG‑CATTCAAGGTTCGTTGTACACCCATCACATTTA‑TTATTTTATGTTTTTTTTAAATTTGGTGCGCGGGCTGC‑AACCCGGGGCTCCGGt > 2:246620/1‑250 (MQ=255) tGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTTCGGGTTGA‑TGTGCCGGGAGGCC‑TGGC‑TTTAGGGCAGCCCGG‑GGGGCCGGAAAAAGCTTTTGTTTTTTGTGATGATCAGAAGAG‑CACTCAGGATTCGTTGTTAAACGACCACATTTA‑TTATTTGATGTTTTTTTAAGATTCGGAACCCGGGCTGC‑AACCGGGGGGTCCgggg > 2:622307/1‑248 (MQ=255) tGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTa < 1:53480/250‑1 (MQ=255) ttGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCCGGTTTTT‑TGTGGCGGGAGGGG‑TGGAGTTTAGGG‑AGCCCGT‑GGCACCCAAAAAAGATTTTTTTTTTTTTGGTGTTCAGAAGAG‑CATTCAGGATTTGTTGTTTACCCATCACACTGG‑TTTTTTTATGTTCTTTTTAAATTTTGTACACGGGGTGC‑AACCCGGGGCGCCGGtgttgtt > 2:363145/1‑244 (MQ=255) ttGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTTA‑TGTGCCGGGAGGGC‑TGGG‑TTTTGGGGAGCCAGT‑GGCACCGAAAACAGCCTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTTA‑TTATCTGATGTTCTTTTAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGtt > 1:11823/1‑250 (MQ=255) tGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTGAGCTTTTA‑TGTGGCGGGAGGGC‑TGGG‑TTTATGGGAGCCAGT‑GGGGCCGAAAAAAGCTTTCGTTTTGTTTGATGATTAGAAAAG‑CATTCAGGAATCGTTTTACACCGAGCACCTTGA‑TTTTTTGATGGTTTTTTAAGATTTGGTACGCGGGCTGC‑CACCGGGAGGTCCGGGAGAGGTTCggggg > 2:302376/1‑249 (MQ=255) tGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGGAGGGC‑TGGG‑TTTAGGGCAGCCCGG‑GGGACCGAAAACAACTTTCGTTTTTTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTTA‑TTATCTTATGTTTTTTAAAGATTCGGTACGCGGGCTGC‑AACCGGGAGCTCCGGTAGAGTTCCggggg > 1:689451/1‑249 (MQ=255) gACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGGAGGGC‑TGGA‑TTTAGGGGAGCCAGT‑GGCACCGAAAAAAGCTTTCGTTTTTTTTGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTTTTTTAAAATTTGGTACGCGGGCTGC‑AAACGGGAGCTCCGGGAGAGTTTCGGGGGATTCGc > 1:292877/1‑250 (MQ=255) aCGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTAt < 2:346730/245‑1 (MQ=255) cGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTTA‑TGTGGCGGGAGGGC‑TGGA‑TTTTGGGCAGCCAGT‑GGGACCGAAAAAAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGGCTGC‑AACCGGGGGCTCCGGGAGAGTTCCGGGGGATTTGCCt > 1:332045/1‑250 (MQ=255) agcagGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTggg < 1:134542/249‑1 (MQ=255) gATGCGTGTGGAGATGGGCTCATTGACAACGCTGGTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTa < 2:264035/250‑1 (MQ=255) gtgtGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCaa < 1:442880/250‑1 (MQ=255) ctgctgAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGc < 1:661497/250‑1 (MQ=255) aGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGa < 1:124517/250‑1 (MQ=255) gC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGACAtt < 1:362595/250‑1 (MQ=255) gCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGACATTTAACgatga > 1:186910/1‑250 (MQ=255) ttGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGACATTTAACGATGATTa > 2:534550/1‑250 (MQ=255) tgtgCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGACATTTAACGATGATTACCGt < 2:283983/250‑1 (MQ=255) ccGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGACATTTAACGATGATTACCGTATTc > 1:55486/1‑250 (MQ=255) aaGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGACATTTAACGATGATTACCGTATTCCGGt < 1:509446/250‑1 (MQ=255) | AGGAGATCCGGTGCTGTTCCGTGGCTATCGGGTAGGTTCGGTTGAAACCAGCACCTTCGATACACAAAAACGCAATATCAGCTATCAACTGTTCATCAATGCACCTTATGACCGACTGGTGACCAACAATGTTCGCTTCTGGAAAGATAGTGGCATTGCGGTTGATCTGACGTCAGCAGGGATGCGTGTGGAGATGGGCTCATTGACAACGCTGCTGAGTGGC‑GGTGTCAGCTTTGA‑TGTGCCGGAAGGTC‑TGGA‑TTTAGGGCAGCCAGT‑GGCACCGAAAACAGCTTTCGTTTTGTATGATGATCAGAAGAG‑CATTCAGGATTCGTTGTACACCGATCACATTGA‑TTATCTGATGTTCTTTAAAGATTCGGTACGCGGTCTGC‑AACCGGGAGCTCCGGTAGAGTTCCGGGGTATTCGCCTGGGTACCGTAAGCAAAGTGCCATTCTTTGCGCCGAATATGCGTCAGACATTTAACGATGATTACCGTATTCCGGT > NZ_CP009273/1009230‑1009724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |