| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,217,689 | 0 | G | A | 43.1% | 65.9 / 18.3 | 51 | pseudogene (2228/2243 nt) | BW25113_RS25990 | autotransporter outer membrane beta‑barrel domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (18/11); new base A (0/22); total (18/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.35e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGCATTACCCATTACCG > NZ_CP009273/1217443‑1217927 | aGGAGAAAAACAGCGGGCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGGCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGaaa < 2:495037/250‑1 (MQ=255) agaAAAACAGCCGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAatat < 1:182201/250‑1 (MQ=255) gaAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAtata < 2:410741/250‑1 (MQ=255) gaAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAtata < 2:609543/250‑1 (MQ=255) aaaCAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGt < 2:417723/250‑1 (MQ=255) cAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCt < 2:31017/250‑1 (MQ=255) ggTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATc < 1:433689/250‑1 (MQ=255) gCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCccgcc < 1:246628/250‑1 (MQ=255) gacTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTaa > 2:185423/1‑249 (MQ=255) ttttGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGcgtcg > 2:629504/1‑250 (MQ=255) tgttgAAATGAACTGGATCCAAAAAAGTAAAGATTTTGCTGTCTCAATGAAGGGTGTAAAAGTCAAAAAAGAGGGGGCGAGTAATTGGGGGG‑AAA‑TAAAACTGGGCGTAAATGGCAACCT‑GAA‑CCCAGCGGCCAGCGTCTGGGGAATGTGGGGGTGCAGCTGGGTGATAATGGCTACAATGCCACCGCAGTGATGGGGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTa < 1:374717/249‑1 (MQ=255) tgAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCa > 1:435009/1‑250 (MQ=255) taaaaTGAACTGAACCCATAACAGAAAAGTTTTTGCTGTCACAATGAACGGTGTAAAAGTCGAAAAAGAGGGGGCGAGTAATTGGGGGA‑AAA‑TTAAACTTGGCGTAAATGGCACCCT‑GAA‑CCCAGCGGCCAGCGTCGGGGGAATGTGGGCGTGCAGCGGGGTGATAATGGCTACAATGACCCCGCAGTGATGGTGGGCCTAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTc < 1:169513/247‑1 (MQ=255) aaaTGAACGGGACCCATAAAAGAAAAGATTTTGCTGTCTCAATAAAGGGTGTGAAAGTCAAACAAGATGGGGCGAGTAATGTGGGGG‑AAA‑TAAAACTGGGCGTAAAGGCCACCCT‑GAA‑CCCGGCGCCCAGCGTCTGGGGAATGTGGGCGTGCAGCGGGGTAATAATGGCTACAATCCCCCCTAGGTGATGGTGGGCCTAAAATATAAGTCCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATc < 2:213779/250‑1 (MQ=255) tGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGAc > 1:560781/1‑250 (MQ=255) tatacATAACAAAAAAGTTTGTGCGGTCTAAAGGAGGGGTGGAAAAAGAGAAGAAGGGGGGGGGGGTAATTGGGGGA‑AAA‑TAAAATTTGGGAAAAAGGGCACCCG‑AAA‑CCGGGCGGCCGGCGTGTGGGGAAGGGGGGGGGGGGGCGGGGGAATAATGGCTACAATGACCCCGCGGTGAGGGTGGGCGTGAAATATAAGTTGTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTAc < 2:223700/246‑1 (MQ=255) acccAAAACAGAAAAGATTTTGCTGTCTAAATGAACGGTGTAAAAGTCGAAAAAGAGGGGGCGAGTAATTGGGGGA‑AAA‑TTAAACTGGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCGGGGGAATGGGGGCGTGCAGCTGGGTGATAATGGCTACAATGACCCCGCAGTGATGGGGGGCCTAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACa < 1:57105/248‑1 (MQ=255) cAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGaaa > 1:127577/1‑249 (MQ=255) gATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTAttt > 1:316815/1‑250 (MQ=255) tttGCTGTCAAAATGAAGGGTGTAAAAGTCAAACAAGAGGGGGCGAGTAATTGGGGGA‑AAA‑TTAATCTTGGCGTAAATGGCACCCT‑AAA‑TCCAGCGGCCAGCGTCTGGGGAATGGGGGGGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTAttttt < 1:442323/249‑1 (MQ=255) ttGCTGTCAAAATAAGCGGTGTAAAAGTCAAAAAAGAGGGGGCGAGTAATTGGGGGA‑AAA‑TTAAACTTGGCGAAAAGGGCAACCT‑GAA‑CCCGGCGGCCGGCGTCGGGGGATTGGGGGCGTGCAGTTGGGTGATAATGGCTACAATGACCCCGCAGTGAGGGTGGGCCTAAAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTAtttttt < 1:173662/249‑1 (MQ=255) tGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGc > 1:574588/1‑250 (MQ=255) gttgcataaaggAACGGGGTAAAAGACGAAAAAGGGGGGGGGAGTAATTGGGGGA‑AAA‑TTAACCTGGGGGAAAAGGGCAACCT‑GAA‑CCCGGCGGCCAGCGTGTGGGGAGGGTGGGGGGGCAGCTGGGTAATAATGGCAAAAATGACCCCGAAGTGATGGGGGGCTTAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGc < 2:21896/238‑1 (MQ=255) tcAATGAAGGGTGTAAAGGAGAAAAAAGAGGGGGCGAGTAATTGGGGGA‑AAA‑TAAAACTGGGCGAAAATGGCAACCT‑GAA‑CCCAGCGGCCGGGGTCGGGGGAATGGGGGCGTGCAGTTGGGTAATAATGGCAAAAATGCCCCCGAAGTGATGGGGGGCTTAAAATATATGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAg < 2:628740/249‑1 (MQ=255) aaCGGTGTAAAAGTCAAACAAGGGGGGGCGAGTAATTTGGGGA‑AAA‑TTAAACTTGGCGAAAATGGCACCCT‑AAA‑CCCAGCGGCCGGCGTGGGGGAAATGTGGGGGGGCAGCGGGGTGATAATGGCTACAATGACCCCGCAGTGAGGGTGGGCCTAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCAt < 1:681342/250‑1 (MQ=255) ggagattaatggggggg‑AAA‑ATAAACTTGGCGTAAAGGGCAACCT‑GAA‑TCCGGCGGCCGTCGTCTGGGAAATGGGGGGGGGCAGTGGGGTGATAATGGCTAAAAGGACACCGCAGTGATGGGGGGCCTAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACa < 1:571658/238‑1 (MQ=255) gAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCa > 1:498207/1‑250 (MQ=255) tAATTGGGGGA‑AAA‑TAAAACTGGGCGTAAAGGGCAACCT‑GAA‑CCCAGCGGCCAGCGTCGGGGGAATGGGGGCGTGCAGTTGGGTGATAATGGCTAAAATGACCCCGCAGTGAGGGGGGGCCTAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCAttt < 1:367704/250‑1 (MQ=255) gtttGGGGG‑AAAGTTAACTTTGGTGT‑AATGGCATCCTCGAA‑TCCAGCGGCCGGGTTGTGGGGAAGGGGGGTGGGGAGCTGGGTGATAATGCCAACAATGCCACCGGAGGGATGGTGGGCGTAAAATATAAGTTTTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTg < 2:162950/249‑1 (MQ=255) aTTTGGGGGAAAA‑TTAAATTGGGCAAAAAGGGCACCCT‑GAA‑TCCGGCGGCCGGGTTCGGGGGAATGGGGGCGGGCAGGGGGTTAAAAAGGGCAAAAATGACCCCGCAGTGAGGGTGGGCCTAAAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCAttt < 1:251204/249‑1 (MQ=255) gggga‑AAA‑TAAACCGTGGCGAAAAGGGAACCCT‑AAA‑CCCGGCGGCCGGCGTCGGGGGAATGGGGGGGTGCGGTGGGGTAATAATGGCTAAAATGACCCCGCAGTGATGGGGGGCCTAAAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGt < 1:116751/250‑1 (MQ=255) aaCTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCa > 1:25947/1‑249 (MQ=255) gtcGTAAAT‑GCAACCC‑GAAGTCCGGCGGCCGGCGTCGGGGGATGGTGGGGGTGCAGGTGGGTGAAAATGGTAACAATGCCCCCGAGGTGGTGGGGGGCCTAAAATAAAATTTCGGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTg < 2:32720/248‑1 (MQ=255) ggCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGAGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCt > 1:666704/1‑249 (MQ=255) ggCGAAAAGGGCACCCT‑GAA‑CCCAGCGGCCAGCGTCTGGGAAATGGGGGCGGGCAGCTGGGTAATAATGGCTAAAATGACACCGCAGTGATGGTGGGCCTAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAAc < 1:554300/247‑1 (MQ=255) tAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGAtt > 1:488192/1‑249 (MQ=255) aaaTGAAAACCT‑GAA‑CCCAGGGGCCAGCGTCGGGGGAATGTGGGCGTGCAGGTGGGTGATAATGGCCACAATGACCCCGCAGTGATGGTGGGCCTAAAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCa < 1:655762/250‑1 (MQ=255) gAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCa > 1:691631/1‑250 (MQ=255) cAGCGGCCAGCGTCGGGGGAAGGTGGGCGTGCAGTTGGGTGATAATGGCTACAATGACACCGCGGTGAGGGTGGGCCTAAAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTg < 1:62840/250‑1 (MQ=255) aGCGGCCAGGGTCTGGGGAGTGTGGGCGTGCAGCGGGGTGAAAATGGCTACAATGACACCGCAGTGAGGGGGGGCCTAAAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTgg < 1:668239/250‑1 (MQ=255) gcgaGCGTGTGGGGAGTGTGGGCGTGGAGCTGAGTAATAATGCCTACAAGGACACCGCAGTGATGGTGGGCCTAAAATATATGTTTGGCCCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCt < 2:239875/247‑1 (MQ=255) gaaggggggCGTGCAGGTGGGTGATAATGGCTAAAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGAt < 1:253768/244‑1 (MQ=255) gCAGCTGGGTAATAATGACTAAAATGACCCCGCAGTGTTGGTGGGCCAAAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAAttttt < 1:302492/250‑1 (MQ=255) ggTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACCGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCAc > 2:540391/1‑250 (MQ=255) aTGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTgg > 1:415039/1‑249 (MQ=255) aaCAATGACCCCGCAGTGATGGTGGCCCTAAAATAAAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGc < 1:406014/249‑1 (MQ=255) gCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcattaccca > 1:537693/1‑250 (MQ=255) gCAGTATTGGGGGGCATAAATTATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcattaccca < 1:223949/250‑1 (MQ=255) gTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcattacccatta > 1:219408/1‑250 (MQ=255) tGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcattacccattac > 1:29934/1‑250 (MQ=255) tggtggGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGCATTACCCATTACCg > 1:169525/1‑249 (MQ=255) | AGGAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGG‑AAA‑TTAAACTTGGCGTAAATGGCAACCT‑GAA‑TCCAGCGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGCATTACCCATTACCG > NZ_CP009273/1217443‑1217927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |