| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 595,032 | 0 | T | G | 41.7% | 55.6 / 30.1 | 48 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| Reads supporting (aligned to +/- strand): ref base T (0/28); new base G (20/0); total (20/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.98e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGTAAAAAGCGCGCTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGAT > NZ_CP009273/594784‑595269 | aGTAAAAAGCGCGCTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGggtg < 1:117437/250‑1 (MQ=255) gcgcTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑Ggggggggtagcccgc > 1:469225/1‑241 (MQ=255) gcTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGG‑GGGGGGGGGGTCCTGCGa > 1:82014/1‑250 (MQ=255) gcTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCCAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGA‑Ggggggggggttcctcca > 2:192351/1‑239 (MQ=255) cTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCa < 2:583542/249‑1 (MQ=255) aaaCCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGATCCTGCGATCCggggaaa > 1:50348/1‑243 (MQ=255) cAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGccc < 1:188928/250‑1 (MQ=255) aGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTAACTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGG‑CGGGGGGGGATCTTGGGATCCCGCACAAAAGcccc > 1:85589/1‑249 (MQ=255) gggcggTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTg < 2:66111/250‑1 (MQ=255) ttCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGTGGTCCTGCGGTCCGGCAAAAAAGCCCCGGAAGGGATcgcc > 1:511363/1‑250 (MQ=255) cgtcgATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATcgccg < 2:127295/249‑1 (MQ=255) gtcgATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCgccg‑cc < 1:467541/250‑1 (MQ=255) gatcgaACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGGTCCTGCGATCCGGCAAAAACGCCCCGGAAGGGATCGccg‑ccggg > 1:541898/1‑248 (MQ=255) gatcgaACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGGGTCCCCGGTGCCGCCAAAACGCCCCGGAAGGGGTAGccg‑ccgcg > 2:398052/1‑248 (MQ=255) gcggaagcggaaTATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGGTCCTGCGATCCCGCAAAAACGCCCGGGGAGTGATCGCCG‑CCGGGGAGG‑ACaaaa > 1:186546/1‑249 (MQ=255) cggaagcggaaTATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGTGGTCCTGCGGTCCCGCCAAAACGCCCGCGGAGTGATTGCCG‑CCGGGAAGG‑ACcaaat > 1:127065/1‑248 (MQ=255) aagcggaaTATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGa < 2:183946/250‑1 (MQ=255) cggaaTATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAAc < 1:71939/250‑1 (MQ=255) cggaaTATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGATCCTGCGTGCCGGCCAAAACCCCCGAGAAGGGTTTCCCG‑CCGGGTAGG‑ACAAACTGGGAAc > 1:328483/1‑250 (MQ=255) atGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAACGCCCGAGACGGGGTCGCCC‑CCGGGAAGG‑GCAAACTGGAAACGGCGaaa > 1:242766/1‑249 (MQ=255) gcgcgcCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAACGCCCGAGAAGGGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAAAGCTGAAAagtagt > 1:581997/1‑250 (MQ=255) gCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGG‑GGGGGGGGGGTCCTGCGATCCGGCAAAAACGCCCGGGAAGGGGTTGCCG‑CCGGGAAGG‑ACAAAATGGAAACGGTGAAAAGTAGTCTGCCGGGAgg > 1:212472/1‑250 (MQ=255) cAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTgg < 1:167667/247‑1 (MQ=255) cgacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCGGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTacaaca < 2:509645/250‑1 (MQ=255) tttAATCACATCGTTGTAAAAGCCAGTGAAAATGGCGTTCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACg < 2:196662/250‑1 (MQ=255) aTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATc < 1:383002/249‑1 (MQ=255) tCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAAAGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGGAGGCGTGGGGATAGTTACAACATACGATCGcagc > 1:230326/1‑248 (MQ=255) aaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTg < 2:48328/250‑1 (MQ=255) gAAAATGGCTTGCTCGTTTATCTGCGCGCTGTTGCGAAGGTCCAGATTGGCGCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGAGAAGTGGCGGGC‑GGGGTGGTGGTCCTGCGACCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGGAGTAGTTACAACATACGATCGCAGCGAGCGCATTGACCGCGACa < 2:113048/250‑1 (MQ=255) gAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGG‑GGGGGGGGGGTCCTGCGGTCCGGCCAAAAAACCCGGGGAGGGATCGCCG‑CCGTGGAGG‑ACAAAAAGGGAAAGCTGGAAAAAAGTCTGCCGGGAGGGGGGGGGAGAGGTACAAAAAAAGATCGCAGCCAGCCCCTTGAACGCGCCa > 2:542756/1‑250 (MQ=255) cGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGGTCCTGCGGTCCGGCCAAAACGCCCGGGAAGTGGTCGCCG‑CCGGGGAGG‑ACAAAAAGGGAAAGCTGAAAAGTAGTCTGCCGGGAGGGGGGGGGGTAGGTTCAACATAAGACAGCAGCCAGCTCCTTTACCGCGCCCTCGACAAc > 2:251241/1‑250 (MQ=255) tATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGc < 2:529234/249‑1 (MQ=255) tATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGc < 2:266239/249‑1 (MQ=255) gcgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGG‑GGGGGGGGGGTCCTGCGGTCCGGCAAAAAAGCCCGAGGAGTGATCGCCG‑CCGGGGAGG‑ACAAACTGGAAAAGCTGAAAAAGAGTCTGCCGGGAGGCGGGGGGATAGGTACAACATACGAACGCAGCCAGCTCATTGACCGCGCCATCGACAACCCCAGCGGCAAGTTGCt > 2:126188/1‑250 (MQ=255) gCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAagag < 1:192351/249‑1 (MQ=255) gAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAACGCCCGAGAAGGGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGGGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGgtt > 1:302170/1‑250 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTTCCTG‑GGTCCGGCCAAAAAACCCGGGGGGCGAACGCCGCCCGGGAGGG‑AAAAAATGAAAAC‑CCGAAAAGGCGTCCGCCGGGAGGGGGGGGGAGAAGTACCAAAAACCAACCCAGCCCGGCCCTTGACCGCCCCCACGCCCACCCCACCGGCCAGTCGCTGGGAgtgtgtt > 2:60853/1‑247 (MQ=255) ggTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTAtt < 1:214597/250‑1 (MQ=255) cAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGGGGTCCTGCGATCCGGCCAAAAAGCCCCGGAAGTGATCGCCG‑CCGTGAAGG‑GCAAACTGGAAAAGCTGGAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTTCAACATACGATCGCAGCCAGGCCCTTTACCGCGCCCTCGACAACCCCCGCGGGACGCTGCTGGGAAGGGTTATTttgg > 2:358175/1‑250 (MQ=255) tGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGGGGAGGTCCCGGGGTGCGGCAAAAACACCCCAGGAGGGAAGGCCG‑GCGCGAAGGTAAAAACGGAAAACGCGGAAAA‑AAGACTGGCGGGAGGCCGGGGGCGCGATACCACACACGGTGACAGCCAGCACCTTGGCTGCGGCCTCCACAACCTCAGCCGGCAGGGGGTGGAAGGGGTTATTGtggagggg > 2:219203/1‑248 (MQ=255) gaTGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCtgt < 1:256472/250‑1 (MQ=255) gaTGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCtgt < 1:470382/250‑1 (MQ=255) cgggcaataacggAACTAAACGGCGAAGGGAAAGTGGCGGGC‑GGGGTGGTGTTCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGt < 2:530723/238‑1 (MQ=255) gCATGGCGGAACTAAACGGGGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTtct < 2:397925/250‑1 (MQ=255) ccGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGc < 2:423987/249‑1 (MQ=255) gagcTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCAtg < 2:501161/247‑1 (MQ=255) aCTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCAtgtg < 2:539454/250‑1 (MQ=255) aagTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGc < 1:406680/250‑1 (MQ=255) agTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCg < 1:576752/250‑1 (MQ=255) gTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGa < 1:281717/250‑1 (MQ=255) tGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGat < 2:82014/250‑1 (MQ=255) | AGTAAAAAGCGCGCTGGATGCTTCAAACCAGGAAGCGGGCGGTTCGTCGATCGAACTGGCGGAAGCGGAATATATGGTGCGCGCCAGCGGCTATCTGCAAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCG‑CCGTGAAGG‑ACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTCAGCGGCAAGTTGCTGGAAGAGTTTATTGTGGTGGCGGTAGTCTGTGCGCTGTTTCTCTGGCATGTGCGCTCGGCGCTGGTGGCGAT > NZ_CP009273/594784‑595269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |