Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092731,429,9750GA39.1% 80.5 / 14.0 47intergenic (‑99/+42)uspF/ompNuniversal stress protein UspF/porin OmpN
Reads supporting (aligned to +/- strand):  ref base G (28/0);  new base A (0/18);  total (28/19)
Fisher's exact test for biased strand distribution p-value = 3.55e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

ATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGCACCACCCGCA  >  NZ_CP009273/1429736‑1430224
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                          
aTAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAg                                                                                                                                                                                                                                                   >  2:411526/1‑249 (MQ=255)
    tagGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGaaa                                                                                                                                                                                                                                                >  2:331552/1‑248 (MQ=255)
      gggCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑c                                                                                                                                                                                                                                           >  1:579333/1‑250 (MQ=255)
         cAGTGAAGGTATTACCGTCAGGAAATGATCCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCg                                                                                                                                                                                                                                        >  1:214097/1‑250 (MQ=255)
          aGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGc                                                                                                                                                                                                                                       >  1:56551/1‑250 (MQ=255)
                    ttACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCg                                                                                                                                                                                                                             >  2:13198/1‑250 (MQ=255)
                              gAAATAAACCGCTGCACCACAAATTTTTCCCTCTACCGCAGTGTATCTAACCCCGAGTTGATTTAATTCGAAAACGAAAATATAGAGAAGAAAAAGAATCTTTCTTTCCATAAACCCCTCTGTTTTATGACCCGAAAAAAAAGTAACGCCAAAGACCTTTTTTTTTATAAGGAAGGATTTAACTTTTTTAATTTAAAAAAAGGGAGAAATAAAAACAAAAAAAAG‑CCCGCCATAACAGCGGGCAggagga                                                                                                                                                                                                                   <  2:62319/250‑1 (MQ=255)
                               aaaTGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGAt                                                                                                                                                                                                                  >  2:13232/1‑250 (MQ=255)
                                      ccTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAAc                                                                                                                                                                                                           >  2:434337/1‑250 (MQ=255)
                                        tctGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACt                                                                                                                                                                                                          >  1:146961/1‑249 (MQ=255)
                                          tGCATCATCAATCTTTCCCTCTCCCACAACGTGCCTAATCACGCTTTGAGTTAATTCAAAATCGAAAATATCGATAGAGAAAAAAATCGTTTTTTTCAAAAACCCTCTTTTTTTAGTATCCTAAAAAAGTGTAACGCCAGATGACATTTTTTGTGTAATGAGGGAGTTCATATTTTTAATTTAGAAAAAAGGAGAAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTg                                                                                                                                                                                                         <  2:55043/248‑1 (MQ=255)
                                            catcatAAATCTTTGCCTTTCCCAAAACGTGGCAAATCACGGGTTGAGTAAATTCTAAATCGAAAATATGGAAAGGGAAAAAAATCTTTCTGTTAAAAAACCCCCCTTTTTTAGTACCCGAAAAAAGTGTAACGCAAGAGGACCTTTTTTGTGAAATGAGGGATTTCAAATTTTTAATTAAGAAAAAAGGAGAAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGa                                                                                                                                                                                                        <  1:417559/247‑1 (MQ=255)
                                             atcatcAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATaaa                                                                                                                                                                                                    >  1:530818/1‑250 (MQ=255)
                                                acaattttttCCCTTTTCCCCACCGTGGATAATCACGGTTGGATTTAATTCTAAATCGAAAATATCAATGGGAACAAAAATCTTTCTGTCAAAAAACCCTCCTTTTTTAGTATCCGAAAAAATTGTAACCCCAGATAACTTTTTTTGTGAAATGACGGATTTCACATTTTTAATTAAGAAAAAAGGAGAAAAAAAAAGCAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCa                                                                                                                                                                                                 <  2:146961/243‑1 (MQ=255)
                                                                 ccTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTTTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAata                                                                                                                                                                                >  1:212374/1‑250 (MQ=255)
                                                                     aaCGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatcat                                                                                                                                                                            >  1:252974/1‑250 (MQ=255)
                                                                     aaCGGGGCTAATCACGCGTTGAGTTAATTCTAAATGGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAACCCTCCTTTTTTATTATCCGAATAAAGTGTAACCCCAGATGACATTTTTTGTGTAATGAGGGAGTTCAATTTTTTAATTAAGATAAAAGGAGAAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatcat                                                                                                                                                                            <  1:588863/250‑1 (MQ=255)
                                                                      aCGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatcatc                                                                                                                                                                           >  1:275307/1‑250 (MQ=255)
                                                                          ggatAATCACGCGTTGATTTAATTCGGATGCAAAATTATGAATGGGAAAAAAAGTCTTTCGTTACATAAACCTTCCTGTTTAAGTATCCGAAAAAAGTTAACCGCAAGTTGCCATTTTTTGTTAAAGAACGAAGTTCACTTTTTTATTTAAGAAAAAAGGAGAAAAAAGAAAAAAAAAAAC‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTa                                                                                                                                                                       <  2:18999/247‑1 (MQ=255)
                                                                          ggCTAACCACGCGTTGATTTAATTCTGAAGCGAAAATATCGATAGGGAAAAGATTTGTTCTTTTAAAAAACCCTCCTTTTTTAGTATCCGCAAAAAGTGTAACGCCAGATGACATTTTTTGTGTAATGAGGGAGTTCACATTTTTAATTTAGATAAAGGGAGAAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTa                                                                                                                                                                       <  1:447197/250‑1 (MQ=255)
                                                                                      tttGATTTAATTCTAAATGGAAAATATCGATAGGAAAAAGAATCGTTTTGTTAAAAAACCCTCCTTTTTTAGTATCCGAAAAAAGTGTAACGCCAGATGACATTTTTTGTGTAATGACGGATTTCACATTTTTAATTTAAAAAAAAGGAGAAAAAATAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTg                                                                                                                                                           <  1:149908/249‑1 (MQ=255)
                                                                                         aaGTTAATTTAGAACCGAAAATATCGATGGGAACAAGATTCGTTTTGTTCAAAAACCCTCCTGTTTTAGTATCCACATAAAGTAAAACGCCAAATGACTTTTTTTGTGTAAGGACGGAGTTCAATTTTTAAATTAAGAAAAAAGGAGGAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGc                                                                                                                                                         <  2:90200/248‑1 (MQ=255)
                                                                                              aaTTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCg                                                                                                                                                     >  1:112286/1‑248 (MQ=255)
                                                                                                ttCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAg                                                                                                                                                  >  2:491360/1‑249 (MQ=255)
                                                                                                                     aGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCaa                                                                                                                              >  2:308357/1‑248 (MQ=255)
                                                                                                                           aaaaaTCTTTTTGTTAAAAAACCCTCCTTTTTTAGTACCCGAAAAAAGTGAAACGCAAGAGAACATTTTTGGTGTAATGAGGGAGTTCAAATTTTAAATTAAGAAAAAAGGAGAAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGa                                                                                                                      <  1:128652/247‑1 (MQ=255)
                                                                                                                           aaGAATCGTTCTGTTAATAAACCCTTTTGTTTTAGTATCCGAAAAAAGTGAAACGCAAGAGGAAATTTTTTGTGTAATGACGGAGTTTACATTTTTAATTTAGTTAAAAGGAGGAAAAATAAGCAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGa                                                                                                                      <  1:42278/250‑1 (MQ=255)
                                                                                                                                        ttaaaaaacCCTCTTTTTTTATTATCCGAATAAAGTGAAACGCAAGATGACATTTTTTGTGAAATGGCGGAGTTCATTTTTTTAATTTAGAAAAAAGGAGAAAAAATAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCaa                                                                                                          <  1:112765/244‑1 (MQ=255)
                                                                                                                                                aCCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAg                                                                                                                                                  >  1:227294/1‑201 (MQ=255)
                                                                                                                                                   tcctGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACa                                                                                              >  1:50936/1‑250 (MQ=255)
                                                                                                                                                       gTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGtt                                                                                          >  2:501052/1‑250 (MQ=255)
                                                                                                                                                        ttttAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGttt                                                                                         >  1:422446/1‑250 (MQ=255)
                                                                                                                                                                cccGCAAAAAGTGTAACGCCAGATGACTTTTTTTGTGTAATGACGGAGTTCACATTTTTAATTAAGAAAAAGGGAGAAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGa                                                                                  <  1:445715/248‑1 (MQ=255)
                                                                                                                                                                       aaaGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATATCCAACGAAGGTGGACATGTTTTTATTGAAATAGt                                                                            >  2:283122/1‑248 (MQ=255)
                                                                                                                                                                             tAACGCCAGATGACATTTTTTGTGTAATGAGGGAGTTCACATTTTTAATTTAGATAAAAGGAGAAAAAATAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTcgcg                                                                    <  1:20430/250‑1 (MQ=255)
                                                                                                                                                                                 gCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCaa                                                                >  2:406027/1‑250 (MQ=255)
                                                                                                                                                                                   aagagGACATTTTTTGTGAAATGACGGATTTCACATTTTTAATTAAAAAAAAAGGAGAAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAata                                                              <  1:13198/249‑1 (MQ=255)
                                                                                                                                                                                                       aTGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATc                                          >  1:115076/1‑250 (MQ=255)
                                                                                                                                                                                                         gagggatttaaaaTTTTAAATTAAAAAAAAAGGAGAAAAAAAAAAAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCtt                                        <  1:560780/238‑1 (MQ=255)
                                                                                                                                                                                                           gagatttataaTTTTTAATTAAAAAAAAAGGAGAAAAAATAAAAAAAAAAAC‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTa                                      <  2:252687/240‑1 (MQ=255)
                                                                                                                                                                                                            ggAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTat                                     >  1:54813/1‑250 (MQ=255)
                                                                                                                                                                                                               gTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTatcat                                  >  2:240686/1‑250 (MQ=255)
                                                                                                                                                                                                                         ttaattaaaaaaaaaGGAGAAAAAAAAAGAAAAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTg                         <  1:343024/237‑1 (MQ=255)
                                                                                                                                                                                                                                aGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTg                 >  1:522593/1‑250 (MQ=255)
                                                                                                                                                                                                                                   tCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCt              >  2:439314/1‑250 (MQ=255)
                                                                                                                                                                                                                                      aaGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGca           >  2:437303/1‑250 (MQ=255)
                                                                                                                                                                                                                                          aggaAAAAGAAG‑AGAAAAAGCCCCACCAGAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATCTCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCAGCCGACATGTTGATTGTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACCCCTACCGGGTTGTCTGccccac       <  2:575688/250‑1 (MQ=255)
                                                                                                                                                                                                                                               gaaTAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGCACCACCCGcc  >  2:593852/1‑249 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                          
ATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAG‑CCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGCACCACCCGCA  >  NZ_CP009273/1429736‑1430224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑