Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 3,344,212 | 0 | A | C | 39.2% | 140.4 / 13.4 | 74 | S725A (TCA→GCA) | arcB | aerobic respiration two‑component sensor histidine kinase ArcB |
Reads supporting (aligned to +/- strand): ref base A (41/4); new base C (0/29); total (41/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.31e-16 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAG > NZ_CP009273/3343964‑3344459 | ttGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGAc > 2:177022/1‑250 (MQ=255) gTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGAcc < 1:800807/249‑1 (MQ=255) tAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGAcccc > 1:346249/1‑250 (MQ=255) aaCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCccg > 2:244552/1‑250 (MQ=255) atcatAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCa > 2:815212/1‑250 (MQ=255) tcatAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCAc < 1:487613/250‑1 (MQ=255) ataataATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCt > 1:462512/1‑250 (MQ=255) ataatTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCttt > 2:492042/1‑249 (MQ=255) taatTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGCTGGCGTAACCCCACTGACACCGCCGCACCTTTaa > 2:772557/1‑250 (MQ=255) aGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGtccttc > 1:582116/1‑250 (MQ=255) ttcccgtGGTTTTGGCCCAGTATCCGCCCCCCCCGGTCGAGCCGGGGTCTTTTTTGTGTCGTTTTTCCCACCCCCCTTTCCAGCCTTTCCACGCCTTGCCCCCACTCTCCTTCCATCTCTCCAACCCATCCCCCGACTTTATCTCCCCAGG‑CGGG‑AAGGTCAGGAGACTGAATTTCCTGA‑CCAAGTTTTTGCAGATGGCGTAACCCCCCGGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTcaaca < 2:751574/243‑1 (MQ=255) gcccTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGAGGCTTTTGCAACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCGGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTAAACAATg > 2:771230/2‑250 (MQ=255) tgtTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTACTTTTATGTCCTTCCTCAACAATGCCttttt > 2:70926/1‑250 (MQ=255) gggCCCAGTATCCGCCCCCCCCGGTCTGGCCGGGTTTTTTTTTTAGTGGTTTTCCCCCCCCCCTCTTTCAGCACTTCTCCGTCGTGCCCCCCCTCTTCTTTCATCTCTCCAACCCATCCCCCGACTTTATCTCCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGAAGAGGGCGAACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTa < 2:165948/248‑1 (MQ=255) attctccgcgCCCCCGGCTCAAGCAGGGTTCTTTTTTTAGTGTTTTTTTCCCCCCCCGCTTTCACCCCTTCTACGTGTTGCCCCCCCTCTTCTTCCATCTCTCAAATCCTTCCCCCGCCTTTATCTCCCCAGG‑CCGG‑AGGGTCAGGAACTTGAATTTGCTAC‑CCCAGTTTTTGCAGAGGCCGTACCCCCCCTACCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTgcg < 2:484134/244‑1 (MQ=255) tcttAGCCGGGTTTTTTTTTTGGTGGTTTTTCCCCCCCCCGCTTCCACCACTTCTCCGGCGGACCCCCCCTCTTCTTTCATCTCTTCAACCCATCCCCCGACGTTATCTCCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGTTTTTGCAGAGGGCTTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTcc < 2:462512/247‑1 (MQ=255) gTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTc > 1:799196/1‑249 (MQ=255) ggggttttttttttTGTGCCTTTTCCCCCCCACTCTTTCACCCCTTCTCCGTCTTCACCCCCCTCTTCTTTCTTCTCTACAACCCATCCCCCGCCTTTATC‑TCCCCGG‑CCGGAAAGGTCAGGAGACTGATTTTGCTGA‑CCCAGTTTTTGAAGAGGGCGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGc < 2:588443/242‑1 (MQ=255) gggTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCt > 1:314662/1‑249 (MQ=255) ggTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCGATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCCCTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGa > 2:737950/1‑250 (MQ=255) ggTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGa > 1:886565/1‑250 (MQ=255) gTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGAATCCAGCACGCTGa > 2:563760/1‑249 (MQ=255) ggCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGcat > 1:179713/1‑249 (MQ=255) ttttGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCatcatc > 2:823473/1‑250 (MQ=255) gCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCAtcttct > 1:610961/1‑250 (MQ=255) ccccGCTTTCACCCCTTCTACGCCGTGACGCCCCTCTTCTTTCATCTCTTAAACCCATCCCCCGACGTTATCTCCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGC‑CCCATCTGTTGCAGATGGCGTAACCCCACCCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAac < 2:830787/247‑1 (MQ=255) ccacGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCaaa > 1:890676/1‑249 (MQ=255) gCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCg > 2:88958/1‑250 (MQ=255) tcaccccTTCTCCGTCGTCACGCCCCTCTTCTTCCTTCTCTTCACTCCTTCCACCGCCGTTATCTCCCCGGG‑CCGG‑AAGCCCGGGAGACTAAATTTGTTGC‑CCCAGCTGTTGCAGATGCCGTACCCCCACGGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCt < 2:905639/242‑1 (MQ=255) gCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAAccc > 1:79329/1‑250 (MQ=255) tACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGt > 1:611121/1‑249 (MQ=255) ccgtcgtCCCCCCCCTCTTCTTTCATCTCTCAAACCCATCCCCCGACTTTATCTCCCCAGG‑CCGG‑AAGGTCGGGAGACTGATTTTGCTGC‑CCCAGTTGTTGCAGAGGGCGACCCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGa < 2:119112/249‑1 (MQ=255) gtccccccccttttcttTCACCTCTCAACCCCATCCCCCGCCTTTATCTCCCCGGC‑CGGG‑AAGGTCAGGAGACTGATTTTGCTGC‑CCCAGCTTTTGCAGATGGCTTCCCCCCCCTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCa < 2:416174/236‑1 (MQ=255) cGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCg > 1:672026/1‑250 (MQ=255) cGCCACTCTTCTTTCATCTCTTCAAACCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAAAACCGATAACCCGTCGGTGATCAGCTTCg > 2:163876/1‑250 (MQ=255) cACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTc > 1:36838/1‑250 (MQ=255) tttCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGt > 2:17161/1‑250 (MQ=255) tcccctctTAAACCCATCCCCCGCCTTTATCTACCCAGG‑CCGG‑AGGGTCAGGAGACTAAATTTGCTCA‑CCCAGCTGTTACAGATGGCATACCCCCCCCCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAg < 1:627961/243‑1 (MQ=255) aTCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTc > 2:43043/1‑248 (MQ=255) ccctcccggatgTTCTCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTCGCTGC‑CCCATCTGTTGCGGATGGCTCACCCCCACCGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCa < 2:48165/239‑1 (MQ=255) ccgtcttttcctCCCAGGCCCGG‑AGGGCCAGGAAATTAATTTGGCGGA‑CCGTGTTGTTGCAGGGGGCAAACCCCCTCGGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATgg < 2:576446/239‑1 (MQ=255) ccgctttATCCTCCCGGG‑CCGG‑AGGGGCAGGAGTCTGAATTTGCTGC‑CCCGGTTGTTGCAGATGGCGCACCCCCACTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg < 2:502850/245‑1 (MQ=255) cGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATgg > 2:637766/1‑249 (MQ=255) gcctttttctcCCCAGG‑CCGG‑AAGGTCAGGAGACTAATTTTGCTGC‑CCCAGCTTTTGCAGATGGCTTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGa < 1:149073/243‑1 (MQ=255) gACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg > 1:744429/1‑249 (MQ=255) tctctcCCCAGG‑CCGG‑AAGGTCGGGAAACT‑AATTTTCCGACCCCGGTTTTTGCAGAGGCCGAACCCCCCCGCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAatat < 2:498557/247‑1 (MQ=255) tacctccccGGG‑CCGG‑AAGGTCAGGAGCCTTATTTTGCTGC‑CCCGGCTGTTGAAGTTGGCGTCCCCCCCCTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAatat < 2:156012/243‑1 (MQ=255) ctCTTCCAGGG‑CCGG‑AGGGGCGGAGGACTGATTTGCCGGC‑CCCAGCTGTGCCAGAGGCCACACCCCCCCGCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATc < 2:148098/248‑1 (MQ=255) tctcCCCAGG‑CGGG‑AAGGTCAGGAGACTAATTTTGCTGC‑CCCAGCTGTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCg < 1:224618/249‑1 (MQ=255) tCTACCCAGG‑CGGG‑AAGCACAGGAGAGAAATTTTGCTCA‑CCCAGTTTTAGCAGATGGAGCACCCCCGCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCg < 1:299989/249‑1 (MQ=255) cccAGG‑CAGG‑AAGGTCATGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTACCCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGc < 2:760513/248‑1 (MQ=255) ccAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAAt > 1:818372/1‑250 (MQ=255) cAGG‑CCGG‑AGGGTCAGGAGACTGATTTTGCTGC‑CCCAGCTGTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATg < 1:886667/250‑1 (MQ=255) g‑CCGA‑AAGGTCAGGAGATTGATTTTGCTGC‑CCCAGCTGTTGCAGTGGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCtt < 2:418654/250‑1 (MQ=255) g‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGa > 1:327404/1‑250 (MQ=255) ggTCAGAAGACTGATTTTGCTCC‑CCCAGTTTTTGCAGATGGCGTACCCCCCCTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAttt < 2:6661/250‑1 (MQ=255) gTCAGGAGACTAAATTTGCTGA‑CCCAGCTGTTGCAGATGGCTTACCCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTa < 1:814775/250‑1 (MQ=255) aGGAGACAGAATTTGCGCC‑CCCATCTTTTGCATAGGCCATCCCCCCCCTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTg < 2:346249/250‑1 (MQ=255) ggAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGt > 2:915399/1‑250 (MQ=255) ggAGACTAATTTTGCCAC‑CCCGGTTGTTACAGCGGGCCTCCCCCCACCCCCCCCGCCACACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGt < 2:543003/250‑1 (MQ=255) gaCTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTtct > 2:161553/1‑250 (MQ=255) aTTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAGCACGTCGGTGATCAGCTTCGGTCCTACACGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTg > 2:551772/1‑250 (MQ=255) cTGC‑CCCGGCTGTTGCAGAGGGCGTAACCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTgtcgt < 2:107794/249‑1 (MQ=255) gCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTAct > 2:848111/1‑250 (MQ=255) cagacgccgccaCCCCCCTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCtca < 2:560087/239‑1 (MQ=255) cAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCtca > 1:458947/1‑250 (MQ=255) aGATGGCGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCtcat < 1:618253/250‑1 (MQ=255) gATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCtcat > 2:540703/1‑249 (MQ=255) acccccccTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTggg < 1:739656/248‑1 (MQ=255) acccccTCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTg < 2:611751/246‑1 (MQ=255) aCTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATcc > 2:637349/1‑249 (MQ=255) gACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAg > 1:682070/1‑249 (MQ=255) gACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAg > 1:20907/1‑249 (MQ=255) gACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAg > 2:475300/1‑249 (MQ=255) | TTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGG‑CCGG‑AAGGTCAGGAGACTGAATTTGCTGA‑CCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTCTCCTCATCATCCTGGGTATCCCAG > NZ_CP009273/3343964‑3344459 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |