| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,049,475 | 0 | A | C | 40.3% | 93.9 / 14.1 | 62 | G75G (GGT→GGG) | glnL | nitrogen regulation protein NR(II) |
| Reads supporting (aligned to +/- strand): ref base A (25/12); new base C (0/25); total (25/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.84e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGCTGAGCAGCTGCGCCGCGCCACGTAAA‑CCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACA > NZ_CP009273/4049231‑4049717 | tGCTGAGCAGCTGCGCCGCGCCACGTAAA‑CCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCtt < 2:78924/249‑1 (MQ=255) agcagcTGCGCCGCGCCACGTAAA‑CCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑ccc < 1:482826/248‑1 (MQ=255) ccgcgccgc‑ccaCGAAAACCCGCCAGGCGTTTTTTTAATCTCAGTGGCCGGGCCGCGCAC‑AAACCCGCGGCAGCCACCCTGCTGGGCGTGCTGTAGTTGTCCCTGCTTTAAGCGGCGCTGTTTATCCATCGGAGCCATCTCCAGCAGGATCCGGCCGCCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCCCTTCGTTATCGGAAAACCCTTG‑CCCCGCCTcc < 2:498295/248‑1 (MQ=255) ccccgcccACGAAAA‑CCCCCAAGCGGTTTTTTAATCTCATGTCCCAGGCCGCGCACTAATTCCCGGGCAG‑CACCCTGCTGGGCGTTCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTTTCCATCGGAGCCATCCCCAGCGGGTTCATCCCGTCCGGCATCCGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GCCCAGCTTCACTTCTTTATCGGTAAACCCTTC‑CCCCGCCTCCAGAc < 2:512327/244‑1 (MQ=255) gcgccccaaaacccGCCAGGGGGTTTTTAAATCGCATGGCCCGGGCCGCGCACTAAATCCGGGGCAG‑CACCTGGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGTTTATCCATCGGAGCCACCCCCAGCGGGATCATGCCGCCCGGCAAACGCGGGGCCGTCACAAAAAGGATATGCGAGCCCCCTTCGAT‑GACCAGCGTCACTTCGTTATGGGAAAACCCTTG‑CCCCGCCTCCAGACttt < 2:329282/238‑1 (MQ=255) cGCCAGGCGGTTTTTTAACCCCATGGCCCGGGCCGCGCACTAAACCCCGGGCAG‑CACCCGGCTGGGCGGGCTGTAGCTGTCCCTGACTTAAGCGGCGCTGGTTATCCACCGGGCCCATCTCCAGCAGGTTCATCCCGCCCGGCATACGCGGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTc < 2:104679/250‑1 (MQ=255) ccAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAG‑CACCCTGCGGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATCCGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCTTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGa < 1:175216/250‑1 (MQ=255) aaTCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAg > 1:245336/1‑250 (MQ=255) aTCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAg > 1:39757/1‑249 (MQ=255) aggggccggcccGCGCACAAAATCCCGGGTAG‑CACCCTGCGGGGCGGGCTGTAGCTGTTCCTGATTAAGGCGGCGCTGGTTACCCATCGGAGCCATCTCCAGCAGGATCATGCCGCCCGGCATACGCGGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGATAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTc < 2:184419/240‑1 (MQ=255) aTGTGCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTa < 1:223251/246‑1 (MQ=255) tgtgCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTc > 2:269292/1‑249 (MQ=255) gtgCCGGGCCGCGCCTTAAGTCCCGGGCGC‑CACCCGCCTGGGCGGGCTGTAGCTTTCCCTGACTAAGGCGGCGTTGTTTACCCATCGGCGCCATCCCCAGCAGGATCATGCCGCCCGCCATACGCGGGGCCGTCACAGAAAGGATATGCGAGCGCCCGCCGAT‑GCCCAGCGTCACTTCTTTATCGGAAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCaa < 2:19490/250‑1 (MQ=255) gtgCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCaa > 2:169141/1‑250 (MQ=255) tgCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCaa > 1:480257/1‑249 (MQ=255) aGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGtt > 2:208276/1‑250 (MQ=255) ggCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTc > 1:250609/1‑250 (MQ=255) cgcgCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCgg > 1:269071/1‑250 (MQ=255) cACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAAc > 1:67370/1‑250 (MQ=255) aCTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACg > 1:307641/1‑250 (MQ=255) aTCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTa > 1:389518/1‑250 (MQ=255) cACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTAc > 2:111862/1‑249 (MQ=255) acccccggcggggcgggcTGGAGCTGTCCCGGACTTAGGCGGGGCTGGTTCTCCGTCGGACCCACCCCCAGCAGGAACAGGCCCTCCGGCATACGCGGGGCCGTCACAAAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCTTCTCTTCTTTATCGGAAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAAtt < 2:89887/240‑1 (MQ=255) aCCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGc > 1:323338/1‑250 (MQ=255) tGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAgtt > 2:382804/1‑250 (MQ=255) gTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAgttg > 1:476840/1‑250 (MQ=255) ttCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAgtt < 1:240938/248‑1 (MQ=255) cTGACTAAAGCGGCGCTGGTTATCCATCGGAGCCATCCCCAGCAGGATCATGCCGCCCGGCATACGCGGGGCCGTCACAGAAAGGATAGGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTgc < 1:333396/250‑1 (MQ=255) aCTTAGGCGGCGCTGGTTATCCATCGGAGCCATCCCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAAAAAGGATATGCGAGCGCCCGTCGAG‑GACCAGCGTCACTTCGTTATCGGTAAACCCTTC‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGcgcg < 1:114995/250‑1 (MQ=255) ggTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGt > 2:125619/1‑249 (MQ=255) gTTATCCATCGGAGCCATCCCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATAGGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCTTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGTGCAGTTGTTGCGCGGCAGGGTTGGCGTa < 1:441180/249‑1 (MQ=255) tATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATg > 1:437790/1‑250 (MQ=255) cATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATc > 1:88744/1‑250 (MQ=255) gAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAg > 1:104525/1‑250 (MQ=255) tctcCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGt > 2:256256/1‑249 (MQ=255) cctGCCGTCCGGCATACGCTGGCCCGTAACAGAAAGGATGTGCGAGCGCCCGTCGAT‑GCCCAGCGTCACTTCTTTAGCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACaaa < 2:445896/248‑1 (MQ=255) ccGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATAc > 2:28153/1‑250 (MQ=255) ccGACCGGCAACCGCTGGGCCGTCACAAAAGGGATAGGCGGGCCCCCTTGGAT‑GACCAGCGTCCCTTCGTTATCGGTAAACCCTTC‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATa < 1:496087/249‑1 (MQ=255) cgcccGGCATACGCGGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCGGCGTCACTTCGTTATCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACt < 1:479868/247‑1 (MQ=255) tCCGGCATCCGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGAAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGt < 1:348297/250‑1 (MQ=255) cGGCATACGCTGGGCCGTCAAAGAAAGGAAATGCGGGCGCCCGTCGAT‑GCCCGGCGTCACTTCGTTATCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTa < 2:192034/250‑1 (MQ=255) ggCATACGCGGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GCCCAGCGTCATTTCTTTATCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAGTGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTaa < 1:362644/250‑1 (MQ=255) gtggggCCGTCAAAAAAAGGATAGGCGAGCCCCCGTCGAT‑CACCGGCGTCACTTCGTTATGGGAAAACCCTTC‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGa < 2:473017/247‑1 (MQ=255) gcggggCCGTCACAGAAAGGATATGCGGGCGCCCGTCGAT‑GACCGGCGTCACTTCGTTATCGGAAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGa < 1:504686/247‑1 (MQ=255) ggCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGt < 2:209989/248‑1 (MQ=255) gCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATTGATTAACAAAATACTGGTAATTAGCGCGtt > 2:5493/1‑248 (MQ=255) aaaGAATATGCGAGCGCCCGCCGAG‑GACCAGCGGCGCTTCTTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGccc < 1:496500/250‑1 (MQ=255) taggCGACCCCCCGTCGTG‑GCCCAGCTTCACTTCGTTAGCGGTAAACCCTTC‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATc < 2:337528/247‑1 (MQ=255) tgggggcgcCCGGGGAT‑GACCAGCGTCACTTCGTTATGGGAAAACCCTGG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCgg < 2:198640/245‑1 (MQ=255) tGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCgg < 2:480257/250‑1 (MQ=255) ggCGAGCGCCCGTCGAG‑GACCAGCGTCTCTTCGTTATCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCg < 2:442615/248‑1 (MQ=255) gcgcgccccGGCGATGGACCAGCGTCGCTTGGTTAT‑GGTAAAACCCGGCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCggg < 2:466562/244‑1 (MQ=255) cGACCGCCCGTCGGT‑GACCGGCGTCACTTCTTTATCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGc < 2:506657/250‑1 (MQ=255) gAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTC‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCt < 1:494461/250‑1 (MQ=255) aGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTg > 2:101075/1‑250 (MQ=255) gcCCGTCGAT‑GACCAGCGTCCCTTCGTTATCGATAAACCCTTC‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGt < 2:495695/250‑1 (MQ=255) cGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGcc > 1:104115/1‑250 (MQ=255) cAGCGTCCCTTCTTTATCGGTAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATa < 1:487495/250‑1 (MQ=255) cccTTCGTTATCGAAAAACCCTGG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGc < 2:351117/246‑1 (MQ=255) tATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTg > 1:279265/1‑249 (MQ=255) tATCGAAAAACCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTg < 1:132375/249‑1 (MQ=255) tccGGAAAACCTTTC‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGa < 2:220891/247‑1 (MQ=255) gtaaaacCCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACa < 2:77100/246‑1 (MQ=255) | TGCTGAGCAGCTGCGCCGCGCCACGTAAA‑CCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAG‑CAACCTGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGAT‑GACCAGCGTCACTTCGTTATCGGTAAAACCTTG‑CCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACA > NZ_CP009273/4049231‑4049717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |