Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 792,856 | 0 | G | T | 40.6% | 57.5 / 10.1 | 32 | V283F (GTT→TTT) | modC | molybdenum ABC transporter ATP‑binding protein ModC |
Reads supporting (aligned to +/- strand): ref base G (15/4); new base T (0/13); total (15/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.15e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TGGTACTGGAAAACGGTCAGGTGAAAGCCTTTGGCGCGCTGGAGGAAGTGTGGGGCAGTAGCGTGATGAATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGCTG > NZ_CP009273/792608‑793105 | tGGTACTGGAAAACGGTCAGGTGAAAGCCTTTGGCGCGCTGGAGGAAGTGTGGGGCAGTAGCGTGATGAATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGt > 1:463199/1‑250 (MQ=255) gTACTGGAAAACGGTCAGGTGAAAGCCTTTGGCGCGCTGGAGGAAGTGTGGGGCAGTAGCGTGATGAATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGtt < 2:463199/249‑1 (MQ=255) ttGGCGCGGGGGAGGAAGTGGGGGGCAGGAGGGGAAGAAATCCGTGCCGGCAAAAAA‑ACAAACAAAGTACCATTCGAAAGGTGAG‑GGTGCTGGAGCACCACCCGCATTACGCGAT‑GCCCGCGCG‑GGCGCGGGGCGATCAGCTTTTGGGGGTAAAAAAGCGGGACGAACCGCTGCAGGCTGCGCTCCGTACCCGCATTCGGGCTTCCGTTTTTTCTTTGTTTTTACAACCGCCGCAGCAAACCAGCATTc < 2:64989/249‑1 (MQ=255) cgcTGGAGGAAGTGTGGGGCAGTAGCGTGATGAATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACg > 1:144930/1‑249 (MQ=255) cgcTGGAGGAAGTGTGGGGCAGTAGCGTGATGAATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACg > 1:48719/1‑249 (MQ=255) gtGGAGGAATTGTGGGGCAGTAGCGTGACGAAGCCGTGGCTG‑CGAAAGCAGCAACAAAGTCGCATTCGAAAGGTGCC‑GGTGCTTGCACCTC‑CCCGGCGTAGCAGATCGGCAGCCGT‑GGCGGTGGGGGATCAGTAGTTGTGGCCAAACAAGCGGGACACCCCCCGACAGGGCGCGTTGCGTTCCCGCATTCCGTGTGCCGATATTTCGCTGTTTTCAAACCCGCCGCAGCAAACCAGCATTCGTAACGTAt < 2:128999/249‑1 (MQ=255) tGGAGGAAGTGTGGGGCAGTAGCGTGATGAATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTAtt > 2:489382/1‑250 (MQ=255) gTAGCGTGATGAATCCGGGGCTGCCAAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCTTTTGTGGGTCAATAAGCGGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCGGGCTTCCGATGTTTCTCGGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTaa < 1:225329/250‑1 (MQ=255) gagggTGATAAACCGGGGGCGGCCAAAAG‑AGCAACAAAGTAGCATTCTGAAGGGGCG‑GGTGTTGGAGCATCATCCGCATGCCGGGAG‑ACCCGCGCG‑GGCGCGGGGCGTTCAGCTTTTGTGGGTCAATAAGCTGGACGACCCGCTGCAAGCTGCGCTACTTACCCGCTTTCAGGCTTCCGATTTTTCTCTGTTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAAt < 2:406998/246‑1 (MQ=255) gCGTGATGAATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCACCCGCATTACGCGAT‑GCCCGCGCG‑GGCGCTGGGCGATCAGCTTTTGTGGGTAAATAAGCGGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATTTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAg < 1:16956/250‑1 (MQ=255) gatgaATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTAt > 1:198297/1‑250 (MQ=255) aacccGTGGCGCCCGAAAG‑GGCAAAAAAGGAGCATTCTGAAGGGGGG‑GGTGCTTGAGCATCACCCGAATCACGGGAT‑GCCGGCGCG‑GGCGCGGGGCGATCAGCTTTTGTGGGTCAATAAGCGGGAGGACCCGCTGCAAGCTGCGCTACGTATCCGCTTTCAGGTTTCCGATTTTTCTCTGTTTTTAAAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATgacg < 2:127077/247‑1 (MQ=255) gCCAAAAG‑ACCAAAAAAGTGGCTTTC‑GAAAGGGGCGGGTGCTTGAGCATCACCCGCATTCCGCGAT‑GACCGCGCT‑GGGGCGGGGCGTTCAGCTTTGGGGGGTCAATAAGCTGGCCGACCCGCTGCAAGCTGCGCTACGTACCCGCATTCAGGCTTCCGATTTTTCTCTGTTTTAACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAg < 2:318362/250‑1 (MQ=255) aaG‑AGCAAAAAAGTAGCTTTCGGAAAGGGAC‑GGTGTTGGGGCATCACCCGCATTCCGCGAT‑GCCGGGGCG‑GGCGCGGGGCGATCAGCTTTTGTGGGTAAATAAGCTGGACAAACCGCTGCAAGCTGCGTTACGTACCCGCATTCAGGCTCCGGATTTTTCTCTGTTTTTAAAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGgtgga < 2:170279/250‑1 (MQ=255) agCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGgtggaagt > 2:521531/1‑250 (MQ=255) caacaaGGAAGCTTCCGGAAAGTGGG‑GGTGTTGGGGCATCTCCCGCATTACGCGAT‑GCCCGCGCG‑GGCGGGGGGCGTCCAGCTTTTGTGGGTCAATAGGCGGGACGACCCGCTGCAGGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTTTGTTTTAACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGgtggaagtgg < 2:209129/250‑1 (MQ=255) tcCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGc > 2:106503/1‑250 (MQ=255) cGCATTACGCGAT‑GACCG‑GCTGGGCGCTGGGCGATCACATTTTGGGGGACAAAAAGCGGGACGCACCGCGGAAGGCTGCGCTACTTCCCCGCATTCAGGCTCCCGATTTTTCTTTGTTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGccc < 2:345615/250‑1 (MQ=255) gcgcgggGCGATCGGCTTTTGTGGTACAAAAAGCTGGACAACCCGCTGCAAGCTGCTCTACGTCCCCGCATCCAGGCTCCCGATTTTTCTCTGTTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGa < 2:269472/250‑1 (MQ=255) cgctggGCGATCAGCTTTTGTGGGTAAATAAGCTGGACGACCCGCTGCAAGCTGCGCTACGTACCCGCATTCAGGCTTCCGATGTTTCTCTGTTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGAt < 1:105672/250‑1 (MQ=255) cgctggGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGAt > 1:430136/1‑250 (MQ=255) tggGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCa > 2:307714/1‑249 (MQ=255) gggTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTa > 1:189640/1‑250 (MQ=255) aCGAACCGCTGCAGGCGGCGCTACGTACCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAg < 1:507931/250‑1 (MQ=255) ccGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtgtgt > 1:459647/1‑250 (MQ=255) gcgcTACGTACCCGCATTCGGCTTTCCGTTTTTTCTCTGTTTTTAAACCCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCt < 1:251407/250‑1 (MQ=255) cTACGTACCCACATTCAGTCTTCGATTGTTTCTTTGTTTTTACACCCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGAt < 2:125486/250‑1 (MQ=255) tATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAAt > 2:457535/1‑250 (MQ=255) tCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGc > 2:49521/1‑249 (MQ=255) tttttCTCTGTTTTTAAAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTg < 1:373705/248‑1 (MQ=255) tGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTg > 2:166170/1‑250 (MQ=255) ctctGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCaa > 2:200062/1‑250 (MQ=255) ggTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATGAATGAACTGGGCAATGCt > 1:279826/1‑250 (MQ=255) gTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGCTg > 2:260010/1‑250 (MQ=255) | TGGTACTGGAAAACGGTCAGGTGAAAGCCTTTGGCGCGCTGGAGGAAGTGTGGGGCAGTAGCGTGATGAATCCGTGGCTGCCGAAAG‑AGCAACAAAGTAGCATTCTGAAAGTGAC‑GGTGCTTGAGCATCATCCGCATTACGCGAT‑GACCGCGCT‑GGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAGGTGGAAGTGGAACTGGAAGTCGGCGGTAAAACGCTGTGGGCGCGTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGCTG > NZ_CP009273/792608‑793105 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |