| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,257,298 | 0 | T | G | 44.0% | 82.7 / 10.4 | 50 | T12P (ACC→CCC) | prs | ribose‑phosphate diphosphokinase |
| Reads supporting (aligned to +/- strand): ref base T (7/21); new base G (22/0); total (29/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.63e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGTAGGGGATAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCA > NZ_CP009273/1257058‑1257528 | aGTAGGGGATAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTAcc < 1:263146/250‑1 (MQ=255) gATAACAGCGTTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCAGTTGGCAATACGTTGTGCTAGTTCC‑GAGGTGGCGTTACCAGCaaaa < 2:95268/250‑1 (MQ=255) gATAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCaaaa < 1:126119/250‑1 (MQ=255) tAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGATGGGAAAAACTTTTGCTTGTTCC‑GGGGGGGGGGTTCCAGCaaaaa > 2:286129/1‑249 (MQ=255) aaCAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTTC‑GGGGGGGCGGTACCAGGAAAAAGc > 1:486760/1‑250 (MQ=255) aTACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAg < 2:161408/250‑1 (MQ=255) aCGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTTCCCGCAAAAAGCTTCATATCAGGc > 1:386748/1‑250 (MQ=255) cGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGagaa < 2:217978/249‑1 (MQ=255) cGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGagaa < 2:419048/249‑1 (MQ=255) cATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAACTTCATATCAGGCACGAGAAGAACCTCAGGCATGccgcc > 1:355010/1‑246 (MQ=255) aTCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTTGCAATACGTTGTGCTTGTTCC‑GGGGGGGCGTTTCCAGCCAAAAGATTTCTATCAGGCACGAGAAGAAACCCCGGCACCCGTccc > 2:237539/1‑249 (MQ=255) cTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGGGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGGAAGAAt > 1:285372/1‑250 (MQ=255) cATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCg < 1:208603/249‑1 (MQ=255) cAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAAAACGGTTTGCTAGTTCC‑GGGGGGGCGTTACCCGCAAAAAGCTTTATATTCGGGACGGGAAAAAACCCAGGGAAGCCTCC‑CTTGGGGGGAaaaaaactccgaaa > 2:248483/1‑239 (MQ=255) gTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGGGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑CTTGGTGGGAAGAAACTGCCGAAAACtg > 1:184167/1‑250 (MQ=255) agtagGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTTGCAAAACGTCGTGCTAGGTCC‑CGGGGGGGGGTACCCGCCAAAAAGTTACTATCAGGCCCGAGAAGAACCCCAGGCATGCGGCC‑ATTGGGTGAAAGAATCTTGCGAAAACAGGGCGGGccc > 2:246613/1‑249 (MQ=255) ggggCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCCATACGTTGTGCTAGGTCC‑GGGGGGGCGTTACCAGCAAAAAACTTCATATCAGGCACGAGAAGAACCCCAGGCAAGc > 2:221420/1‑205 (MQ=255) ggggCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCa < 1:180683/250‑1 (MQ=255) gggCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCg < 1:221420/205‑1 (MQ=255) aCTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCAGCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTTAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAg < 2:298259/250‑1 (MQ=255) ggATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGGGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑CTTGGGGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCg > 1:480318/1‑250 (MQ=255) atgatgAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTTGCAATACGTTTTGGTAGTTCC‑GGGGGGGGGGTACCAGCAAAAAGCTTCATATCAAGCACGAGGAGAAACTCCGGCAAGGGGCCAATTGTGGGAAAGAA‑CTGCCCAAAACTGGTCGGGCCAGGGATGATCACTTCCACGCggg > 2:406176/1‑249 (MQ=255) gatgaAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGGTCC‑GGGGGGGGGGTACCAGCAAAAAACTTCATATCAGGCACGAGAAGAAACTCAGGCATGCGTCC‑CTTGGTGGGAAGAATCTGCCGAAAAATGTGCGGGCCAGGCATGATCCTTTCCAGGCgggg > 1:143273/1‑247 (MQ=255) atgaAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAAAAAGTTGTGCTAGGTCC‑GGGGGGGGGGTACCAGCAAAAAGGTTCATATCAGGCACGAGAAGAACCCCAGGCATGCGTCC‑ATTTGTGGGAAGAAACTGCCGGAAAATGTGCGGGGCAGGGAGGAACCTTTCCAGGCGgtggg > 2:49247/1‑248 (MQ=255) gaAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGGGGCGGTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCCGGCATGATCCTTTCCAGGCGGTGTAtt > 1:310630/1‑250 (MQ=255) tCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAagag < 2:388599/249‑1 (MQ=255) ccGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGGTCC‑GGGGGGGCGGTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGGAAGAAACTGCCGAAAAATGTGCGGGCCAGGCATGATCCTTTTCAGGCGGGGTATTTAAGAGCGCG‑ATg > 1:81272/1‑250 (MQ=255) gcgTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCa < 1:511781/250‑1 (MQ=255) tACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGGCATACGTTGTGGTAGTTCCGGGGGGGGGGTTACC‑GCAAAAAACTTTAAATCAAGGAAGAGAAGAAACTCCGGCATGCGTCC‑ATTGGGGGGAAGAATACGCCCAAAAACGTGCGGGCGCGGCCAGGTACCTTCCAGGAGGCGGCTTTAAGAGCGCG‑GTGCCACg > 2:456320/1‑250 (MQ=255) tCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCGTATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGa < 2:523472/249‑1 (MQ=255) aTTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAAc < 1:208585/249‑1 (MQ=255) aTTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGGGGCGGTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCCGGCATGATCCTTTCCAGGCGGGGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACaaagg > 1:433220/1‑247 (MQ=255) tACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGGGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGt > 1:353818/1‑250 (MQ=255) cGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTg < 1:394403/250‑1 (MQ=255) cTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCg < 1:333713/250‑1 (MQ=255) cGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGa < 1:86844/248‑1 (MQ=255) tAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACCCTGTGCCAGTTTC‑GGGGGGGGGTTACCAGCAAAAAACCTCCTATCAGGCACGAGAAGAAACTCAGGCATTCGTCC‑CTTTGTGGAAAGAAAATTCCCAAAACCGGGCGGGCCAGGCATGATCCTTTCCCGGCGGGGGGTTTAAAAGCGCGAAGGCAACGCCCGGACAAAGGGGCGGTTGCCACCGAAAccacactt > 2:337649/1‑243 (MQ=255) aaaGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGGACTATCCTGTGCCAGTTCC‑GGGGGGGGGTTACCAGCAAAAAGCTTCATAACTGGGACGAGAAGAAAACCAGGGAGGCGTCC‑ATTGGGGGAAAGAAACTGCCGCAAACTGCTCGAGCCCGGCAGGATGCTTTCCCGGCGGGGGAATAAAGAGGGCG‑ACGGAACGCCTCGGACAAGGGTACGGTGTCACCGAAAACCAGCCTGc > 2:391306/1‑250 (MQ=255) aaGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGGGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTTCAGGCGGGGTATTTAAGAGCGCG‑ATGCAAAGTCTGGGAAAAAGGGACGTTGTCACCGAAAATCAGCTTGcc > 1:393660/1‑250 (MQ=255) cAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTTGCAATAAGTTGTGCTAGGTCC‑GGGGGGGGGGTACCAGCAAAAAACTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑CTTGGTGGGAAGAATCTGCCGAAAAATGTGCGGGCCAGGCATGATCCTTTCCAGGCGGGGTGTTAAAAAGCGCG‑ATGCAACGCCTGGAACAAGGTGAAGGTGTCACCGAAAATCAACTTGCCCGGCTTa > 2:74850/1‑247 (MQ=255) cAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAg < 2:137128/250‑1 (MQ=255) cggcgTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCAt < 1:15847/250‑1 (MQ=255) gCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGctct < 1:133666/249‑1 (MQ=255) cGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCtgtg < 2:527906/250‑1 (MQ=255) aGTGAAGTGTACAGGCGGTTGGGAATAAGTTGTGCTAGTTCC‑GGGGGGGGGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGGGGTTTAAAAAGGGCG‑ATGCAAAGTCTGGAACAAGGGGACGTTGTTACCGAAACACAGGTTGCCCGGCTTAAAGCATGGCTCcgtgg > 2:102803/1‑248 (MQ=255) aGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGAt > 2:31378/1‑250 (MQ=255) ggTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAgc > 2:390179/1‑250 (MQ=255) tGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGcc > 2:315464/1‑250 (MQ=255) aaTACGGTGTGCTTGTTCC‑GGGGGGGCGTTACCAGCCAAAAACTTCATATTAGGCACGAGAAAAACCTCCGGCATGCGGCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGGCAGGCATGATCCTTTCCAGGCGGGGGATTAAAGAGGGCG‑GTGGCAAGTCTGGAAAAAAGGGGCGGTGTCACCGAAAATCAGCTTGCCCCGCCTTAAGCAAGGCCCTGTGGAATGGGGGAAGATTAGGGCCTTTc > 2:181861/1‑250 (MQ=255) gTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGCGCAATGGGGAAAGCTTAGCGCCTTTCGTca > 2:398869/1‑249 (MQ=255) | AGTAGGGGATAACAGCGGTGATACGACCTGCGGAAGCACGACGCAGGGCATCAACCATAACGACTAATTCCATCAGGTTGTCGTTAGTAGGGGCACAAGTGGACTGGATGATGAAAATATCACCACCGCGTACATTTTCATTAATTTGTACGCTGACTTCGCCATCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCC‑GGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCC‑ATTGGTGGAAAGAATCTGCCGAAAACTGTGCGGGCCAGGCATGATCCTTTCCAGGCGGTGTATTAAAGAGCGCG‑ATGCAACGTCTGGAACAAGGTGACGTTGTCACCGAAACTCAGCTTGCCCGGCTTAAAGCATGGCTCTGTGCAATGGGGAAAGATTAGCGCCTTTCGCCA > NZ_CP009273/1257058‑1257528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |