New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3416618 =	62 (0.590)	9 (0.090) +GAATTAATTCC	8/474	13.2	10.5%	intergenic (+65/+166)	yhdZ/rrf	amino acid ABC transporter ATP‑binding protein/5S ribosomal RNA
	?	NZ_CP009273	4161677 =	99 (0.950)					noncoding (111/116 nt)	rrf	5S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGGCGCAGTCGGGTATGACAATGTTGTGTGTAACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATG  >  NZ_CP009273/3416371‑3416864                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          cTGGCGCAGTCGGGTATGACAATGTTGTGTGTAACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTg                                                                                                                                                                                                                                                         <  1:464365/250‑1 (MQ=255)           cGGGTATGTGAATGCTGTGCGAAACCGATGCAATGGGGGTTGCACGTAGCGTCGCTGAACGGGTAATTTTTATGGATCGTGGGGAAATAGCGGAGGCAGCTTCACCTGATTAATTTTTTGGGCATACTAAATCAGAGCGCACGAGGGCATTTTTATCGCAGGTAATCCATTAAATGAATGTTAGTTCGTCACGCAAAAAGGCAATTCTGTCGAATGGCCTTTCGATTGATTTGATATCTGGCAGTTTa                                                                                                                                                                                                                                                 >  2:687678/1‑248 (MQ=255)             ggTATGACACTGTTGTGTGTAACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGCAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGACGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATggc                                                                                                                                                                                                                                             >  1:298212/1‑250 (MQ=255)              gTATGACAATGTTGTGTGTAACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATggc‑g                                                                                                                                                                                                                                           <  1:194413/250‑1 (MQ=255)               tATGACAATGTTGTGTGTAACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATggc‑gg                                                                                                                                                                                                                                          >  1:1004262/1‑250 (MQ=255)                 tGACAATGTTGTGTGTAACACATGAGGTGGGGGTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTATGAGTGCATTTTTATCGCAGGTAATCCATTAAGTGAATGTTAGTTCGGAAAACAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATggc‑ggg                                                                                                                                                                                                                                         <  2:964580/249‑1 (MQ=255)                                tAACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCAc                                                                                                                                                                                                                          <  1:752042/249‑1 (MQ=255)                                       tGAGATGGGGTTTGCACGAACCGTCGCTGACCGTGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCggg                                                                                                                                                                                                                  <  1:757476/250‑1 (MQ=255)                                        gagaTGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTCTGGC‑GGGGGGTCTGCGCgccgccactcggcg                                                                                                                                                                                                                 >  2:220898/1‑242 (MQ=255)                                             ggggTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGCGCCGCccccccccccccccgcccctt                                                                                                                                                                                                            >  1:694347/1‑241 (MQ=255)                                              gggTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc                                                                                                                                                                                                           <  1:309856/250‑1 (MQ=255)                                              gggTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc                                                                                                                                                                                                           <  1:78601/250‑1 (MQ=255)                                                   tGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGTCCTCCCCCCCCCCCCCCgccccggccgctg                                                                                                                                                                                                        >  2:729922/1‑237 (MQ=255)                                                     cACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑aa                                                                                                                                                                                                   <  1:252529/250‑1 (MQ=255)                                                           ccttCGCTGACCGGGTAATTTTTATGGATCGTGGGTAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCa                                                                                                                                                                                             <  1:657899/247‑1 (MQ=255)                                                              tCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAAt                                                                                                                                                                                          <  2:879032/250‑1 (MQ=255)                                                                 cTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGGCCTGCCCGCCCCCCCCCCGGCCGTTGCTTTGC‑AACGTTTAAATCCg                                                                                                                                                                                       >  1:487221/1‑250 (MQ=255)                                                                 cTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGGCCCGCCCGCCACCCCCCCGGCGGTTGTTTCCC‑CACATCCaaaaacg                                                                                                                                                                                       >  1:768668/1‑246 (MQ=255)                                                                    aCCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGGCCTGCCCCCCCCCCCCCCCGCCGTTGCGTTTC‑CAAGATCTAATCCGCTc                                                                                                                                                                                    >  2:487757/1‑250 (MQ=255)                                                                      cGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTccc                                                                                                                                                                                  <  2:577158/250‑1 (MQ=255)                                                                       gggTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCcg                                                                                                                                                                                 <  1:142573/250‑1 (MQ=255)                                                                            aTTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCCCCCCCCCCCCGGCCCGTTCTTCGC‑AACCTTTTAATTCCCCCCccgc‑ggg                                                                                                                                                                           >  1:861854/1‑249 (MQ=255)                                                                                         gTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCg                                                                                                                                                              <  1:319589/250‑1 (MQ=255)                                                                                             ggAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGgag                                                                                                                                                          <  1:378492/250‑1 (MQ=255)                                                                                              gAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGgaga                                                                                                                                                         <  1:1001879/250‑1 (MQ=255)                                                                                               aaaTAGTGGAGCAAGCTGCCCCTGATGAATTTTTTGCGCATCCTAAATCAGATCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGagag                                                                                                                                                        <  2:1003683/250‑1 (MQ=255)                                                                                               aaaTAGTGGAGCAAGCGGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGagag                                                                                                                                                        <  2:561660/250‑1 (MQ=255)                                                                                                aaTAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGGGTCCTGCCCGCCCCCCCCCCGGCCGTTGCTTTGC‑AACCTTCTAATCCGCCCCCCGC‑GGGGTTGTCCTTCTCTGGggagg                                                                                                                                                       >  1:730658/1‑249 (MQ=255)                                                                                                 aTAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTACTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGGCCCGTCCGCCCCCCCCCGCGCCGTTGCTTCGC‑AACACGCTAATCATCTCCCCGC‑GGGCTTGTCCCACCCgccggggtg                                                                                                                                                      >  2:330071/1‑242 (MQ=255)                                                                                                  tAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAgtgt                                                                                                                                                     <  1:332044/250‑1 (MQ=255)                                                                                                   aGTGGAGCAAGCTCCACCTGTTGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGtt                                                                                                                                                    <  2:522740/250‑1 (MQ=255)                                                                                                     tGGATCAAGCTGCACCTGATAAATTTTTTGCGCATCCTAAATCAGAGCGGTCGATGTCATTTTTATCGCAGTTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCGCCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCGCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCa                                                                                                                                                  <  2:794424/250‑1 (MQ=25)                                                                                                     tGGAGCAAGCTGCACCTGATGAATATTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCa                                                                                                                                                  <  1:99684/250‑1 (MQ=255)                                                                                                      ggAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCAc                                                                                                                                                 <  2:865162/250‑1 (MQ=255)                                                                                                          cAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTAGCGCAGGTAATCCATTAATCGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTGGATGTCTGGCAGTTTATGGC‑GGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACGCGGGAGAGTGTTCACCGac                                                                                                                                             <  2:952758/250‑1 (MQ=255)                                                                                                                      gatgaATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGGGTCCTGCCCCCCCCCCCCCCGGCCGTTGCTTCGCAAACGTT‑AAAACCGCCCCCCGCGGGGTTTGT‑CTACTCTGGGGAGTGTTCACCGCCAAACAACAGAt                                                                                                                                  >  1:216074/1‑249 (MQ=255)                                                                                                                       atgaATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATaa                                                                                                                                <  2:756585/250‑1 (MQ=255)                                                                                                                           aTTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTAGCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACa                                                                                                                            <  2:88264/250‑1 (MQ=255)                                                                                                                              ttttGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaaa                                                                                                                          <  1:262767/249‑1 (MQ=255)                                                                                                                                ttGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTTCCCCCCCCCCCCCCGGCCGTTTCTTCGC‑CAAGTTCTAATCCCCCCCCCGC‑GGGTTTTTCCTTCTCCGGAGAGGGTTTACCCACAAACAACCAATAAAACaaaaag                                                                                                                       >  1:254646/1‑248 (MQ=255)                                                                                                                                   cgcATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGcc                                                                                                                     <  1:748174/249‑1 (MQ=255)                                                                                                                                           aaaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCCCCCCCCTCCCGGGCGTTGCTTCTC‑AAAGTTCAAATCCGCCCCCCGC‑GGGGTTTTTCTCTTCCGGAGGGTGTTCACCGACAAAAAAAAGAAAAAAAAAAAAACCCCGACTTcc                                                                                                            >  1:533105/1‑250 (MQ=255)                                                                                                                                                agagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACt                                                                                                        <  2:168450/249‑1 (MQ=255)                                                                                                                                                        cGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCtttt                                                                                               <  2:128612/250‑1 (MQ=255)                                                                                                                                                         gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCCCCCCCCCCCGGGCCGTTGCTTTGC‑CACCTTCAAATCCGCTCCCCGC‑GGGTTTTTCCTTCTCCGGAGAGGGGTTACCGACAAACAACAGATAAAAAAAAAAGCCCAGTCTTCCGCCTGAGCCctttt                                                                                              >  1:352837/1‑249 (MQ=255)                                                                                                                                                            ggCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGGCCTGCCCCCCCCCCCCCCGGCCGCTGCTTTTC‑CACGGTCAAATCCCCTCCCCGC‑CGGGTTTTTCTCCCCTCGGGAGGGTTTACCGACCAACAAACAAAAAAAAAAAAAACCCACGCTTCCGCCCGGGGCCTTTGttt                                                                                           >  2:297884/1‑250 (MQ=255)                                                                                                                                                                     aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGAt                                                                                   <  1:374625/249‑1 (MQ=255)                                                                                                                                                                      tCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAATCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGt                                                                                 <  1:894151/250‑1 (MQ=255)                                                                                                                                                                         cAGGTAATCCATTAATTTAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCTTTTTGTTTTATTTGATGTCTg                                                                              <  1:33274/250‑1 (MQ=255)                                                                                                                                                                          aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg                                                                             <  1:487066/250‑1 (MQ=255)                                                                                                                                                                           ggTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCCCCCGGCCGGTGCTTCGC‑AACGTTCAAATCCGCTCCCCGC‑GGGTTTTTTCTACTCCGGAGAGTGGTCACCGCCAAAAAACAGATAAAACAAAAAGACCAGTCTTCCGCCTGAGCCCTTTGTTTTTTTTTATTTCttg                                                                             >  1:517335/1‑247 (MQ=18)                                                                                                                                                                            ttaatgaaTTAATTGAATGTTATTTCGAGAAGCAAAAAGGCTCTCGTGGCGGATGATCTGTAGCTTGATTGTATGTCTGGCAGTTTATGGC‑GGGCGTCCGGTCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTATTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCa                                                                           <  2:70956/243‑1 (MQ=17)                                                                                                                                                                            gTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCa                                                                           <  2:354357/250‑1 (MQ=255)                                                                                                                                                                                  cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc                                                                      <  2:21281/249‑1 (MQ=255)                                                                                                                                                                                      aaTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAc                                                                  <  1:39772/249‑1 (MQ=255)                                                                                                                                                                                      aaTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGAGGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAc                                                                  <  2:771096/249‑1 (MQ=255)                                                                                                                                                                                          gAATTTTAGATCTAAAATCAAGAAGGCAATCTATCCGATTGGGTTTTCGTTTGTTTTGATGTAGGGCTGTTAATGGC‑AGGCGTCCTGCCCGCCGCCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGATAGTGTTCACCGACAAACAACAGATAAAACAAAAAGCCCAGTCTTCCGACTGAGCCTTTTGTTTAATTTGATGTCTGGCAGTTCCCTActccc                                                              <  2:789707/249‑3 (MQ=14)                                                                                                                                                                                           aaTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGc                                                            <  1:666002/250‑1 (MQ=255)                                                                                                                                                                                                                               gATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCg                        <  2:53544/250‑1 (MQ=255)                                                                                                                                                                                                                                   gCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGttt                     <  1:453910/249‑1 (MQ=255)                                                                                                                                                                                                                                                tttgatGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCg       <  2:242475/250‑1 (MQ=39)                                                                                                                                                                                                                                                     tGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATg  <  1:421578/250‑1 (MQ=39)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          CTGGCGCAGTCGGGTATGACAATGTTGTGTGTAACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGC‑GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATG  >  NZ_CP009273/3416371‑3416864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.