mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC | 608,121 | (GCAAAT)2→3 | intergenic (‑171/‑72) | fepA ← / → fes | siderophore enterobactin receptor FepA/enterochelin esterase |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,843,014 | C→T | intergenic (‑81/‑80) | ydjA ← / → sppA | NAD(P)H nitroreductase/signal peptide peptidase SppA |
| RA | 2,277,556 | (A)8→7 | intergenic (‑130/‑52) | yejK ← / → yejL | nucleoid‑associated protein YejK/YejL family protein |
| MC JC | 3,330,891 | Δ15 bp | coding (346‑360/636 nt) | mlaC ← | phospholipid‑binding protein MlaC |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 562235 = | NA (NA) | 113 (1.090) | 100/490 | 0.1 | 99.1% | intergenic (+6/‑63) | BW25113_RS02770/BW25113_RS02780 | protein ren/IS3‑like element IS3 family transposase |
| ? | NZ_CP009273 | 573852 = | 1 (0.010) | coding (55/168 nt) | rzoD | prophage lysis lipoprotein RzoD | |||||
| * | ? | NZ_CP009273 | = 563488 | NA (NA) | 94 (0.910) | 85/492 | 0.4 | 99.0% | intergenic (+28/‑3) | BW25113_RS02780/BW25113_RS02785 | IS3‑like element IS3 family transposase/protein ren |
| ? | NZ_CP009273 | = 573858 | 1 (0.010) | coding (61/168 nt) | rzoD | prophage lysis lipoprotein RzoD | |||||
| * | ? | NZ_CP009273 | 1203246 = | 15 (0.140) | 67 (0.680) | 61/464 | 1.3 | 77.0% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 26 (0.270) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 15 (0.140) | 64 (0.650) | 58/464 | 1.5 | 76.2% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 26 (0.270) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||