Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092733,199,7990CA36.2% 109.8 / 20.2 70intergenic (‑184/‑23)ttdR/ttdADNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha
Reads supporting (aligned to +/- strand):  ref base C (17/27);  new base A (9/16);  total (27/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGG  >  NZ_CP009273/3199557‑3200046
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                          
cTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACa                                                                                                                                                                                                                                                    <  2:573470/250‑1 (MQ=255)
   tgAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCATTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACaaaa                                                                                                                                                                                                                                                 <  1:561583/250‑1 (MQ=255)
     aaCGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAAc                                                                                                                                                                                                                                               <  2:121699/250‑1 (MQ=255)
      aCGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACt                                                                                                                                                                                                                                              <  2:388256/250‑1 (MQ=255)
            tCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAATTTTTTTTAACAAAAAAAAAAAcctggggt                                                                                                                                                                                                                                        >  2:695293/1‑243 (MQ=255)
                ccAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTg                                                                                                                                                                                                                                       <  1:587848/247‑1 (MQ=255)
                    tACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGATAAATTTTTCAATCAAAAACAAAAAATGGATGTGCCaggat                                                                                                                                                                                                                                >  2:405366/1‑250 (MQ=255)
                     aCCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCCGACAAATACAAAAAATGGAGGTGCCctgat                                                                                                                                                                                                                                >  1:506431/1‑249 (MQ=255)
                      ccTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAACCTGGAGTTGCCatgatg                                                                                                                                                                                                                               <  2:530511/249‑1 (MQ=255)
                            aGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGaaa                                                                                                                                                                                                                        <  2:586334/250‑1 (MQ=255)
                             gTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAg                                                                                                                                                                                                                       <  2:738004/250‑1 (MQ=255)
                               cTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGGTGGCATGATGAGAGAAAGt                                                                                                                                                                                                                      >  1:352172/1‑249 (MQ=255)
                                  tGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCCAACAAATAAAAAAAATGGAGTTTGCATGAATAGCGaaaaaaaa                                                                                                                                                                                                                   >  1:210410/1‑244 (MQ=255)
                                  tGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGta                                                                                                                                                                                                                     <  2:235764/247‑1 (MQ=255)
                                     cTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCTGACAAATACAAAAAATGGAGGTGCCATGATGAGCGAAAGaaataaa                                                                                                                                                                                                               >  1:239785/1‑248 (MQ=255)
                                        aaGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCa                                                                                                                                                                                                             <  1:66338/248‑1 (MQ=255)
                                             cAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCa                                                                                                                                                                                                      <  1:417798/250‑1 (MQ=255)
                                                   ttCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAAATGAGTTGTGCTGATGGGAGGAAGTAAAAAATAAAAGACAGAGaa                                                                                                                                                                                                 >  2:303415/1‑249 (MQ=255)
                                                        cATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGtt                                                                                                                                                                                          <  2:176113/250‑1 (MQ=255)
                                                           cGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAGTTTTTTCATAGAAATAACAAAAAAGGGGTTTGGAGTAATGGCGAAAGTAATCAAGAAACAGCCAGTAATAAGtgtg                                                                                                                                                                                        >  2:438686/1‑246 (MQ=255)
                                                            gTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTCCCGAAAAATAAAAAAAATGGAGTTGCCATGATGAGCGAAAGTAATAAAAAACAAGCAGTGAATAAGATGaa                                                                                                                                                                                       >  1:571033/1‑248 (MQ=255)
                                                             ttAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACag                                                                                                                                                                                     <  1:528688/250‑1 (MQ=255)
                                                             ttAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACag                                                                                                                                                                                     <  1:149112/250‑1 (MQ=255)
                                                               aaTTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACaga                                                                                                                                                                                    <  1:697319/249‑1 (MQ=255)
                                                                   aTCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAAATTTTTCAGAAAAAAAAAAAAAATGATGGTGGCATGATGAGGGAAAGTAATAAACAAAAAGCAGGGAATAAAATGAAAGAGATTg                                                                                                                                                                               >  1:714870/1‑250 (MQ=255)
                                                                             gtgATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACt                                                                                                                                                                      <  2:552085/249‑1 (MQ=255)
                                                                                   aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGc                                                                                                                                                               <  1:620705/250‑1 (MQ=255)
                                                                                       cAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTTCAAAAAATAAAAAAAATAGAGGTGGCATGAGGAGGCGAAGGAATAAAACAAAGGAAGTGAATAAGATGTAAGAAGTTTTCGCCAAATTTTCCGCCAt                                                                                                                                                            >  2:118741/1‑249 (MQ=255)
                                                                                            tATTTCGCAAAACATTGCATTTCCCGGCTCTGGCGAAATATTCATTCTTATTTTCGCTTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAATTTGACAGAGATTGTCGCTAACTTTACCGCCATGAttt                                                                                                                                                       <  1:486785/249‑1 (MQ=255)
                                                                                              tttCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAACTGGAGGTGGCATGATGAGGGGAAGGAAAAAACAAAAGGCAGGGAATAAGATTACAGAGATTGTCGCTAACTTTACCGCCCTGATTTCTa                                                                                                                                                    >  1:405019/1‑250 (MQ=255)
                                                                                                   cAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGa                                                                                                                                               <  1:573743/250‑1 (MQ=255)
                                                                                                         aTTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCt                                                                                                                                         <  1:242800/250‑1 (MQ=255)
                                                                                                             ccATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATAAAAAAACGGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                                                                                                                                     <  1:230973/250‑1 (MQ=255)
                                                                                                              cATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGGTGCCATGATGAGCGAAAGTAATAAAAAACAAGCAGTGAATAAAATGACAGAGATTGTTGCTAACTTTACCGCCATGATTTTTACCCGAAAGCCtgat                                                                                                                                      >  1:611288/1‑248 (MQ=255)
                                                                                                                    cTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCAACAAATACCAAAAATTGAGGTGCCATGATGAGCGAAAATAATAAAAAACAAGCAGTGAATAAAGTGACAGAGATTTTCGCTAAATTTTTCCCCCTGATTTTTTCCCCCATGCCTGATGACgtggt                                                                                                                              >  1:37894/1‑250 (MQ=255)
                                                                                                                             cgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGATATTTTCCACCAAAATAAAAAAACTTGAGTTGCGATGATTGTTGAAAGAAATAAAAAAAAGCGATAGAATAATTTCACAGAGATGTTCTTTAACTTTTTCGCCAATTTTTCTTCCCCAATCCCTTTTGACCTGGCGGATCAAc                                                                                                                      >  1:78685/1‑249 (MQ=255)
                                                                                                                              gcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTTAAAAAATAAAAAAAATGGAGGTGCCCTGGTTAGCGAAAGTAAAAAAAAAAAAGAAATGAAAAAATTGAAAAAGATTGTTGGTTAATTTAACGCCACGATTTTTACACCAATGTCTGATGACGTGGGGGGTaaaat                                                                                                                     >  2:598449/1‑247 (MQ=255)
                                                                                                                              gcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTCGACAAATAAAAAAAATGGAGTTGCCATGTTGAGCGGAAGTAATAAACAACAAGCAGGGGATAAGATGACAAAGATTGTCGCTTACCTTAACGCCCTGATTTCTAACCGAAATCCTCATGTCGTGGGGGGTAAACt                                                                                                                     >  1:706344/1‑249 (MQ=255)
                                                                                                                                     tcatttTTTTTTTCGCGTTTATTCACGAACGTTTAAATACATATGCAGGGTAGAAAAAAATATAAAACCTCATTTTTAGTGGAAGTTTGGGGGGGAAAATTTCTCCAGAAAAAAAAAAAAACGGGAGTTGCCAGAATGAGCAAAAGTAATAAGCAACAGGGAGTAAATAGGTTGAAAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAg                                                                                                              <  2:55404/249‑1 (MQ=255)
                                                                                                                                     tcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCAGACCAACAAAAAAAAAGGAGTTGTCAAGATGAGCGGAAATAATAAAAAACAGGAAGGGAAAAAGGTTGAAGAGAGTGTCGCTAACTTTTACACCATGATTTTTACACGAATACCTGATGACGTGGGGGGtaaaataaaaaaa                                                                                                              >  2:324510/1‑246 (MQ=255)
                                                                                                                                      cattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAAAAAAACAAAAAATAGAGTTTTCATGATGAGGGGAAAGAATAAAAAACAAGAAGTGAATAAGTTGAAAGAGATTGTCGCTAACATTAACGCCCTGATTTTTTAACGAAAGCCTGATGAAGTGGTGGGTCAACTAAAAAAGc                                                                                                             >  2:541916/1‑249 (MQ=255)
                                                                                                                                         ccTTATTTTCTCGTATATTCACGACCTGTTATTTACATTTTCACGTTGGCAAAAAATATAAAACCACATTTTTAGTGTTATTTTGTGGCGGTAAATTTTTCCAGACAAATACAAAAACTGGAGTTCCCATGATGAGCAAAAGTAATAAGCAACAGGAATTAAATAAGTTGACAAAGTTTGTCGCTATTTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCt                                                                                                            <  2:358035/246‑1 (MQ=255)
                                                                                                                                              ttttCGCGTTGATTCACGACCTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCAAGAAAAATAAAAAAACGGGAGTTGCCATGATGAGCGAAAGTAATAACCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAt                                                                                                     <  1:226542/249‑1 (MQ=255)
                                                                                                                                                   gcgTTGATTCACAAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTATTTGGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGaa                                                                                               <  1:490074/250‑1 (MQ=255)
                                                                                                                                                     gTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTGGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAc                                                                                             <  1:331600/250‑1 (MQ=255)
                                                                                                                                                            aacaaattGTTAATTACATATTCACGGTGGAAAAAAATATAAACCCCCATTTTTAGTGGTAGTTTGTGGCGTTAATTTTTTCCAGAAAAATACAAAAACTGGAGTTGCCATGATGAGCAAAATTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGTTTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACgtcgtc                                                                                       <  1:714781/242‑1 (MQ=255)
                                                                                                                                                                            cATATTCACGGTGGCAAAAAATATAAAACCACTTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGATTTGCCATGATGAGAGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCt                                                                      <  1:622490/250‑1 (MQ=255)
                                                                                                                                                                            cATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGAGAGTTTGTGGCGGTAAATTTTTCAAGACAAATACAAAAACGGGATTTGCCAAGATGAGCAAAAGTAAAAAGCAACAGGCGGTGAATAGGTTAACGGAGATTGTCGCAAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCt                                                                      <  1:291781/250‑1 (MQ=255)
                                                                                                                                                                             atatTCACGGTGGCAAAAAAAATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACGGGAGTTGCCATGATGAGCGAAAGAAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTa                                                                     <  1:201392/250‑1 (MQ=255)
                                                                                                                                                                                    cGGTGGAAAAAAAAAAAAAACCCCTTTTTAAGTGGAAGTTTGTGGCGGTGAATTTTTCAAACAAAATACAAAACCTGGATTTGCCATGATGAGCAAAAGTAATAACCAACGGGAAGTAAAAAAGTTGAAAGAGATTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                              <  2:161338/250‑1 (MQ=255)
                                                                                                                                                                                      ggggCAAAAAATAAAAAACCACATTTTTAGTGGTAGTTGGTGGCGGTAAATTTTTCAAAACAAATAAAAAAACTGGATTTGCCAGGATGAGCGAAAGTAAAAAGAAACAGGCAGTAAATAAGTTGACAGAGTTTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGAt                                                            <  2:701711/248‑1 (MQ=255)
                                                                                                                                                                                           aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCACAAAAATAAAAAAAATAGAGTTGGCCTGATGAGCGAAAGTAATAAAAAAAAGGCAGTGAATAAATTGAAAGAGATTGTTGGTAACTTTAACGCCATGATTTTTTACCCAATGACTGATGAAGGGGGGGGTAAAATAAAAAAACTAAAAGAAGCCGAAAAGGCGGCGGTGGGGGAAAATATATAACAAAAGATGTTc                                                        >  2:129149/1‑249 (MQ=255)
                                                                                                                                                                                            aaaaaTAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGATTTTTTCCAAAAAAATAAAAAAACGGGAGTTGCCAGGATGAGAGAAAGAAAAAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGa                                                      <  2:405019/250‑1 (MQ=255)
                                                                                                                                                                                              aaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCCAAAAAAAAAAAAAAATTGGGTTGTGATGGTGAGCGAAAGAAATAAAAAAAAAGGAAGGAAAAAGTTTAAAGAGATTGTGGCCAAATTTACCCCCAAGATTTCTATCCCAAAGCCTGATGACGGGGGGGGAAAAATAAAAAAACTAAAAGATGCCGAAACAACGCCGGTGGGGGAAAATATATAACAAACCAAGTTCgcg                                                     >  2:316554/1‑247 (MQ=255)
                                                                                                                                                                                              aaaTAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAAAAATACAAAAACTGGAGTTGCCATGAGGAGCAAAAGTAAAAAGCAACAGGCAGTAAATAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGaca                                                    <  2:210410/250‑1 (MQ=255)
                                                                                                                                                                                               aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAAAACAAAAAATGGAGTTGCCCTGATGAGCGCAAGTAATAAACAACAGGCAGTGGATAAGTTGACAGAGATTGTTGCTTACTTTACCGCCATGATTTTTACCCGAATGCCTGATGACGTGGTGGATAAAATAAAAAAACTAAAAGAAGCCGGAAAGTAGTCGTTGGGGAGAAATATCTTCCATAACATGTTCGaca                                                    >  1:578470/1‑249 (MQ=255)
                                                                                                                                                                                                  ataAACCCCCTTTTTAAGTGGTAGTTTGTGGCGGAAAATTTTTCCAAAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAATTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCAAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACAt                                                <  1:339263/250‑1 (MQ=255)
                                                                                                                                                                                                     aaaCCACATTTTGAGTGGTAGTTGGGGGCGGTGAATTTTTCCAGACAAATACAAAAACGGGATTTCCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATATACCATACGATGTTCGACAACATGCa                                             <  1:412920/250‑1 (MQ=255)
                                                                                                                                                                                                            aTTTTAAGTGTTATTTTTGGGGGGTAAATTTTCCAAGAAAAAAACAAAAACGGGATTGCCCATGATGAGCGAAATAAAAAAGAAACAGGCAGTAAATAAGTGGACAGAGATTGTCGCAAACTTAACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCg                                      <  2:571033/250‑1 (MQ=255)
                                                                                                                                                                                                                 tAGTGGTAGTTTGTGGGGGTGAATTTTCCCAAAAAAATACAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCATTGAATAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTg                                  <  1:244074/249‑1 (MQ=255)
                                                                                                                                                                                                                      ttAGTTGGTGGCGGTGAATTTTTCCAGAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTg                             <  1:185398/248‑1 (MQ=255)
                                                                                                                                                                                                                      gtgttttGTGGGGGTTAATTTTTCCAGAAAAATACAAAAACGGGAGTGGCCATGATGAGGGAAAGTAATAAGCAACAGGCAGTGAATAGGTTGACAGAGATTGGCGCTATCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACGACATGCAAAAAGCGATTGACCTg                             <  1:33866/245‑1 (MQ=255)
                                                                                                                                                                                                                        aGTTTGTGGCAGTGAATTTTTCAAAAAAAAAAAAAAAACGGGAGTGGCATAGAGGAGCGAAATTAATAAGCAACAGGCGGTGAATAAGTGGACAAAGTTTGTCGCTACCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTGCGACAACATGCAAAAAGCGATTGACCTGAAt                          <  2:9418/250‑1 (MQ=255)
                                                                                                                                                                                                                              tgGCGGTGAATTTTTCCAGAAAAATAAAAAAACTGGAGTTGCAATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcc                     <  1:361070/249‑1 (MQ=255)
                                                                                                                                                                                                                                   gggaaaTTTTTCCAGAAAAAAACAAAAACTGGAGTGCCCAAGAAGAGCAAAAAAAAAAAGAACAAGGAAGTAAAAAGGTTGACAGAGATTGTCGCTAACTTAACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgcct                <  2:506431/246‑1 (MQ=255)
                                                                                                                                                                                                                                       aaTTTTTCCAGAACAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGt              >  2:437754/1‑248 (MQ=255)
                                                                                                                                                                                                                                        aTTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATACACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTCTCAg           >  2:127701/1‑250 (MQ=255)
                                                                                                                                                                                                                                          ttttCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGa         >  2:614934/1‑250 (MQ=255)
                                                                                                                                                                                                                                             tCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGacac      >  1:226132/1‑250 (MQ=255)
                                                                                                                                                                                                                                                 gACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg  >  2:148295/1‑250 (MQ=255)
                                                                                                                                                                                                                                                   cAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg  >  2:25739/1‑248 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                          
CTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGG  >  NZ_CP009273/3199557‑3200046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: