Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092732,221,7540TC50.0% 31.4 / 15.3 42pseudogene (484/1436 nt)mdtQmultidrug resistance outer membrane protein MdtQ
Reads supporting (aligned to +/- strand):  ref base T (13/8);  new base C (6/15);  total (19/23)
Fisher's exact test for biased strand distribution p-value = 6.16e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCC  >  NZ_CP009273/2221515‑2222002
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                           
tGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGAt                                                                                                                                                                                                                                                    <  1:625011/249‑1 (MQ=255)
              tCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGatat                                                                                                                                                                                                                                     <  1:649913/250‑1 (MQ=255)
                 gTTTCCACGCCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCga                                                                                                                                                                                                                                  <  1:704603/250‑1 (MQ=255)
                     ccACACCTTCAACGGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGTTCACGGTAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTACCGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTGCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGAt                                                                                                                                                                                                                              <  2:540503/249‑1 (MQ=255)
                      cacaCCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGGTCCGCCGCCCGTGCTTTTACCGTACCCAGGCGGGCCGTAACCTCCGCCCGATTCTTTTCCCCGATATCgggaggt                                                                                                                                                                                                                            >  1:613779/1‑247 (MQ=255)
                        cacCTTCAACTGAAGAAGTAATCCCGTTCTGATATGGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCa                                                                                                                                                                                                                          <  2:586548/250‑1 (MQ=255)
                         acCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAg                                                                                                                                                                                                                         <  2:385652/250‑1 (MQ=255)
                              cAACTGAAGAAGTAATCCCGTTCTGATATAGGTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGccc                                                                                                                                                                                                                      <  2:734311/248‑1 (MQ=255)
                                      gaagTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCCCGGTCCGCCGCCCCTGCTTTTACCGTACCCCCGCGGGGCGGAACCTCCCCCCCCCTTTTTCCCCCGATAACGAGATGCCCGCCCCCCGCTTAGc                                                                                                                                                                                                           >  2:464861/1‑250 (MQ=255)
                                        agTAACCCCGTTCTGATATAGCTGGCGATCGGTCGCTATAAGGGTTTCTTGCTTTTTTTCTATTTGCTGCAAGCCCGTGTTTACCGCCGCCTGGGTTTCCCACCCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTCCCGCCGCCCGGTCTTTACCCGTACCCGGGCGGGCAGTACCCCCCCCCCGATTCTTTCCCAAGATATCGAGATGCCAGCCCGCCGTTAAGCCa                                                                                                                                                                                                         <  2:34341/250‑1 (MQ=255)
                                           aaTCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCGTTCCCCCCCCCCCGCTTTTACCCTACCCAGGCGGGCGGTAACCCCCCCCCCATTCTTTTCCCCGACATACAGATGGCACGCCCCCGCTACGCCcaa                                                                                                                                                                                                      >  2:365896/1‑249 (MQ=255)
                                           aaTCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCCGCCAGCCCGCAATTGGCGGGGTTTCTTGGGTTCCGCCGCCCCGGCCTTTACCGTAACCACGCGGGGGGTAAACCCCCCCCCCTTCTTTCCCCCGACATCTAGATGCGAGcccccccgtttgcccaa                                                                                                                                                                                                        >  2:298568/1‑238 (MQ=255)
                                            aTCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGGTCGCGTTTCGCCGCCCGTGCGTTAAACGTACCCAGGCGGGGAGGAAACTCCGCCCCATTCTTTTCCCCGATATAGAGATGCCAGCCCGCCCGTAAGCCcaaa                                                                                                                                                                                                     >  1:598147/1‑249 (MQ=255)
                                                    cTGATATCGCTGGCGCGGTGTCGCGATAATGGGTTTCTGCTCTTTTTCTTTTTGCTGCAAGACTGTTTTTACCGCCCCCTGGTTTTGCCACCCCCAGTACAGGCGGGCTCCGCTGCCAGCCAGCATTTGGCGGGTTTGCTCGCGTCCCCCCCCCCGTGCTTTAACCGTCCCCAGGCGGGCAGTACCCCCCGCCCGATTCTTTCCCCATATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGtt                                                                                                                                                                                             <  2:705326/249‑1 (MQ=255)
                                                      gATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCGTTCCGCCGCCCCTGCTTTTAACCTACCCAGGCGGGCAGGAACCCCCGCCCGATTCTTTCCCCAGATATCGCGATGCCAGCCCGCCGCTAAGCCAAAAGAACCCtttgg                                                                                                                                                                                          >  1:202227/1‑247 (MQ=255)
                                                                  attcggccggtttAAGGGTTTTCGTCTCTTTTTCAATTTGCGGCAGGCCCGTTTTTACCCCCGCCTGGGTTGCCACCCCCCAGCACAGGCGGGTTCCGTTGCCACCCGCCATTTGGCGTGTTTCCCCGCGTTCCCCCGCCCGTTCTTTACCCGTCCCCGGGGGGGAACTACCCCCCCCCCGATTCTTTCCCCAGATGTCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGc                                                                                                                                                                               <  2:273305/237‑1 (MQ=255)
                                                                                   gttttCTCCTCTTTTTCTTTTGCCGGAACGACCGTGTTGAGCCCCCCCGGGTTTTGCCCCCCCAAGTACAGGGGGCCTACGCTGCCAGCCAGAAATGGGCGGGTTTGCTCGCTTCCCCCCCCCCGTGTTTTACCCGTACCCAGGCGGGAAGTACCCCCCCCCCGATTCTTCCCCCAGATACCGAGATGCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCg                                                                                                                                                             <  2:282709/247‑1 (MQ=255)
                                                                                                        ggctgcAAGCCCGTGTTTACCGCCGCCTGGGTTTGCCCCCCCCAGTACAGGCGGGCTCCGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTACCCGTCCCCGGGCGGGCAGTACCCCCCGCCCGATTCTTCCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGcc                                                                                                                                                              <  1:32390/227‑1 (MQ=255)
                                                                                                              caggccggtgtTTACCGCCGCCTGGTTTTCCCCCTCCCAGACAGGGCGGGTTCCGCGCCCAGCCACCAATTGGCGGTTTTGCCCGCGTCCCCCCGCCGGTTCTTTAACCGCCCCCGGGGGGGCAGCACCCCCCGCCCGATTCTTCCCCCAGATATCGAGATGCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCAtt                                                                                                                                   <  2:22952/243‑1 (MQ=255)
                                                                                                                aagccctgtTTAAGCGCCCCCTGGTTTCGCCCCCCCGAGTACGGGCGGGCTCCGCTCCCAGCCAGCATTGGGCGGGTTTGCTCGCGTCCCGCCCCCCGTGTTTTACCCGTCCCCGGGGGGGAGGTACCCCCCCCCCGTTTCTTCCCCCATATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTa                                                                                                                                  <  2:633724/244‑1 (MQ=255)
                                                                                                                       gtTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCCCGGTCCGCCGCCCCGGCTTTTAACGTACCCCGGCGGGCGGTAACCTCCCCCCCGTTTTTTCCCCCGATATCGAGAATGCAACCCCCCCCTTAGCCACAAAGAACCTTTGGGTACCCCCGGCCCGTCCTACCCCCGGCCGGCTCGTTCCTGGCAAACGCCCCCCCTAAGCCctct                                                                                                                          >  2:365610/1‑250 (MQ=255)
                                                                                                                        tttAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAAACTCCGCCCGATTCTTTTCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGGGTACCACCGGGCGGGCGGACCTGCGGCCGGGTCGTTCAGAGCAAACGGCCCCATTAAGCCCTCTg                                                                                                                         >  1:385379/1‑250 (MQ=255)
                                                                                                                        tttAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGCCCGCGTTCCCCCCCCCCTGGCTTTAACCTACCCACGCGGGGAGGAAACCCCCCCCCGTTTCTTTCCCCGGTATTGGGGAGCCCGGCCCCCCGTTAGCCCAAAAAAACCGTTGGGGTACAACGGGCCGGCGGCACCCCCGCCCGGTTGGTTCAGGGCAAAGGCCCCCCCTAAGcctcct                                                                                                                          >  2:321139/1‑250 (MQ=255)
                                                                                                                        tttAACGCCGCCGGGGTTTGCCCCCCCCAGTACGGGCGGGCTACGCTGCCAGCCAGAAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTACCCGTACCCAGGCGGGTAGTACCCCCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCt                                                                                                                          <  1:77084/249‑1 (MQ=255)
                                                                                                                                              cACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGCTTTTTCGCGGTCCGCCGCCCGTGCTTTTAACGCACCCCGGCGGGGAGTAACCCCCCCCCCCTTCTTTTCCCCGATATTGCGGAGCCCACCCGCCGCTGAACCAAAAAAAACCCTTGGGGACCACCGGGCGGGCGGAACCGCCGCCGGGGAGGTCCGAGGAAACAGCCCCCCTAAACCCTCTTCCGGCCCTTTTTTCCGccccc                                                                                                    >  2:474248/1‑249 (MQ=255)
                                                                                                                                                         tccgggCGGGCTCCGCGGCCACCCAGCAATTGGCGGGTTGCCCCGCGTCCCCCCCCCCGTGCTTAACCCGTCCCCAGGCGGGCAGTACCCCCCGCCCGTTTCTTCCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATccgccg                                                                                           <  1:249803/246‑1 (MQ=255)
                                                                                                                                                               cGGGCTACGCTGCCAGCCAGCAATGGGCGGTTTTGCTCGCTTCCCGCCGCCCGTGCTTTAACCGTCCCCAGGGGGGAAGTACCCCCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGt                                                                                     <  1:474729/250‑1 (MQ=255)
                                                                                                                                                                gggCTACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGGAACCTCCGCCCGGTTCTTTCCCCCGATATCGAGATGCCAGCCCGCCGTTTAGCCAAAAGTACCGGTTGTGTACCACGGGGCGGGCGTACCTGCGGCCCGGTCCGTCAGAGCAAACGGCCCCCTTAAGCCTTCCTCCGGCCATTTTTGGCGCTCCACAACCGACGGAAAggc                                                                                    >  2:552939/1‑248 (MQ=255)
                                                                                                                                                                                caggAATTGGGGGTTTGGCTCGCGTGCCGCCGCCCGTGCTTTACCCGCACCCAGGCGGGCAGAACCCCCCGCCGAATTTTTCCCCCAAATATGGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATcc                                                                    <  1:209230/250‑1 (MQ=255)
                                                                                                                                                                                        ggCGGGCTTGCTCGCGCTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCTGTAACCCCCGCCCCATTCTTTTCCCAGATTTCGAGATGCCAACCCGCCGTTAAGCCAAAAACACCTTTTGCGTACCCCGGGCCGGTCGGACCTGCGGCCCGCACGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGGCAATTTTTGCCGCTCCATATCCGCCGAAAAATCGATCCCCGGAGCAACCAGAGTGGc                                                            >  2:493166/1‑250 (MQ=255)
                                                                                                                                                                                         gggggTTGGCGCGCGTCCCGCCGCCGGACCTGTAACCGGCCCAGGCCGGGCAGACCCCCCCCCCCGCTTCTTCCCCCATATATGGAGATGCTGTCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCa                                                           <  2:318227/248‑1 (MQ=255)
                                                                                                                                                                                         gCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGc                                                            >  1:416350/1‑249 (MQ=255)
                                                                                                                                                                                          gtggTTTGGCTCGCTTTCCCCCCCCCGTGCTTAAACGGTCCCCGGGCGGGCATTACCCCCCGCCCGATTCTTCCCCCAGTTAGCGAGATGCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCa                                                           <  2:131468/248‑1 (MQ=255)
                                                                                                                                                                                           gggTTTGCTCGCTTTCCCCCCCCGGTGCTTTAACCGTCCCCGGGCGGGCATTACCCCCCGCCCGATTTTTCCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAAc                                                         <  1:336602/250‑1 (MQ=255)
                                                                                                                                                                                             gTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTg                                                       >  1:414171/1‑250 (MQ=255)
                                                                                                                                                                                                   cTCGCGTTCCCCCCCCCGTTTTTTAACCGTCCCCAGGCGGGCTTTAACCCCCCCCCCATTCTTCCCCCAGATTGCGAGAGCCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTc                                                  <  1:290767/250‑1 (MQ=255)
                                                                                                                                                                                                               cgccCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCtt                                        >  2:693306/1‑248 (MQ=255)
                                                                                                                                                                                                                gccCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTCAGCCAAAAGTACCGGTGGTGTACCACGGGCCAGTCGTACCTGCGGCCGGAACGTTCCGAGCAAAAGGCCCCCATAAGCATGCTGCCGAAATTTTTTGCCGATCCATATCCGCCGAAAAGTCGTTCTCAGGACCGTCCTGAGTGGCAGCTGCCTTCGCCTTGGCTTccg                                     >  2:715891/1‑248 (MQ=255)
                                                                                                                                                                                                                   cGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagc                                    >  1:160410/1‑248 (MQ=255)
                                                                                                                                                                                                                                       ggCGGGAAGAACCCTCCGCCAAATTCTTCCCCCAGATAGGGAGAGGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGc               <  1:151751/250‑1 (MQ=255)
                                                                                                                                                                                                                                                     ccTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATc   >  1:47924/1‑250 (MQ=255)
                                                                                                                                                                                                                                                      cTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATcc  >  2:229747/1‑250 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                           
TGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCACCTGCATATCC  >  NZ_CP009273/2221515‑2222002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: