Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092732,897,0740GA32.8% 116.1 / 37.9 67intergenic (+341/+1032)ygcE/queEFGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
Reads supporting (aligned to +/- strand):  ref base G (8/37);  new base A (22/0);  total (30/37)
Fisher's exact test for biased strand distribution p-value = 2.16e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

ATGATAACAAGTCCGGTTTATCCCCGCTGATGCAGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGGTGTTACGTGGATATGTTGCTTATT  >  NZ_CP009273/2896827‑2897321
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                
aTGATAACAAGTCCGGTTTATCCCCGCTGATGCAGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGAc                                                                                                                                                                                                                                                                <  1:173893/250‑1 (MQ=255)
         aGTCCGGTTTATCCCCGCTGATGCAGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCa                                                                                                                                                                                                                                                       <  2:171469/250‑1 (MQ=255)
         aGTCCGGTTTATCCCCGCTGATGCAGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCa                                                                                                                                                                                                                                                       <  1:399114/250‑1 (MQ=255)
                  tATCCCCGCTGATGCAGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATttatt                                                                                                                                                                                                                                               <  2:49258/249‑1 (MQ=255)
                            gATGCAGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAAACAACCAATTACCTCAAAAAAAAAAAAAAAATCCCAAATTTTTTATTTAAcaa                                                                                                                                                                                                                                     >  1:541424/1‑247 (MQ=255)
                                cAGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAAACACTCATTATCCTCCAAAAAAAAAAAAAATTCCAAATTTATTATTTTACCaaataa                                                                                                                                                                                                                               >  1:676963/1‑245 (MQ=255)
                                 aGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTGTAAAAAAAACAATTATCCTCAAAACAAAAAAAAAAATACAGATTTTTTACTTAACaaaataaa                                                                                                                                                                                                                              >  1:428685/1‑244 (MQ=255)
                                           ataaAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTa                                                                                                                                                                                                                   <  2:92277/249‑1 (MQ=255)
                                                           gTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTAtt                                                                                                                                                                                                 <  2:232610/250‑1 (MQ=255)
                                                                      cccTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAAACACCACTTAACCTCAAAAAAAAAACAAAAATTCAGAATTATTATTTTACCAAAAAAAAACAAAACTAAAAAAAATAATTGTATTTTAAAGaaaa                                                                                                                                                                                      >  1:241372/1‑249 (MQ=255)
                                                                       ccTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGaaaaa                                                                                                                                                                                     <  1:441269/249‑1 (MQ=255)
                                                                           tttttACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAAtt                                                                                                                                                                                  <  2:436939/248‑1 (MQ=255)
                                                                             tttACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAAc                                                                                                                                                                               <  2:192401/249‑1 (MQ=255)
                                                                              ttACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACa                                                                                                                                                                              <  1:467074/249‑1 (MQ=255)
                                                                                 cAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGc                                                                                                                                                                           <  1:686409/249‑1 (MQ=255)
                                                                                      aaTATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAAt                                                                                                                                                                     <  2:467468/250‑1 (MQ=255)
                                                                                       atatTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAAtt                                                                                                                                                                    <  2:681975/250‑1 (MQ=255)
                                                                                             aCTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAatat                                                                                                                                                             <  2:618345/250‑1 (MQ=255)
                                                                                              cTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATAtt                                                                                                                                                            <  2:62814/250‑1 (MQ=255)
                                                                                                 cacTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTa                                                                                                                                                          <  2:601739/248‑1 (MQ=255)
                                                                                                   cTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTaaaaa                                                                                                                                                      <  2:160119/250‑1 (MQ=255)
                                                                                                    tCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTTTAAAACCACTCCTTTACCTCCAAACAAAAAAAAACTTCCCCATTTTTTTCTTTACCAAATAATAAAAAACCTTAAAAAAATTATTTTTTTTTTCAAAAAAAAATAACAAGCCTTTATTTACTAATtaaaa                                                                                                                                                      >  1:174790/1‑249 (MQ=255)
                                                                                                       aTGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAaata                                                                                                                                                  <  1:624807/250‑1 (MQ=255)
                                                                                                        tGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAaataa                                                                                                                                                 <  1:321229/250‑1 (MQ=255)
                                                                                                              tAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTTTAAAAACACTCATTATCCTCCAAACAAAAAAAAAAATCCAGATTTTTTTTTTAACCAATAAATAAAAAAACTAAAAAAAAAAATGTTTTTTTTAAAAAAAAAATAAAAAACAATAAATTAAAATTaaaaaaaaaaaaaat                                                                                                                                            >  2:26478/1‑244 (MQ=255)
                                                                                                              tAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGAt                                                                                                                                            <  2:96557/249‑1 (MQ=255)
                                                                                                                   tAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATTTAAAAACACCCATTATCCCCAAAAAAAAAAAAAAAATCCAGATTTATTTATTTAACAAAAAAAAAAAAAATTAAAAAAAATAATTTTTTTTTTAAAAAAAAAATAAAAAGCAATAATTTAAAATTAAAAAAAAAAAAAATTaaaaa                                                                                                                                     >  1:254597/1‑249 (MQ=255)
                                                                                                                       aGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATTTAAAAAAAACAATTATCATCAAAAAAAAAACAAAAAACTTCAATTTTTATTTATACAAATAAAAAAAAACATAAAAAAAAAAATTTTTTTTTTAAAAAAAAAATTAAAAGCATTAAATAAATAATAAAAAAAAAATAAATATAAAAttct                                                                                                                                  >  2:180442/1‑248 (MQ=255)
                                                                                                                        gACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATTTAAAAACAACCACTATCCTCCAAAAAAAAACAAACATCCCGATTTATTTATTAAACAATGAATAAAAAACTTAAAAAATATACTTTTTTTTTTAAAAAAAAAATAAAAAACATTAATTTAAAATTAAAAAAAAAAAAAAATAAAAttttt                                                                                                                                 >  2:77840/1‑247 (MQ=255)
                                                                                                                           aaTACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATTTTAAAAAACTCCTTAGCCTCCAAAAAAAAAAAAAAATTCAAATTTTTTATTTTAACCATGAAAAAAAAAATTAAAAAAAAAAATGTTTTTTTATAAAAAAAAATAAAAAGAAATAAATTAATATTAAAAAAAAAATATAATAAAATTTTTTaa                                                                                                                             >  2:653503/1‑249 (MQ=255)
                                                                                                                            aTACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTTTAAAAAAAACCATTTTTCTCAAAAAAAAAAAAAAAATTCATATTTTTTATTTTAATAAAAAAAAACAAAAATAAAAAAAATAAATGTATTTTTAAAAAAAAAATAAAAAGCAATAAATTAAAAATTAAAAAAAAAAAAAATAAAAAattttaaa                                                                                                                              >  2:205286/1‑244 (MQ=255)
                                                                                                                                    cGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTGTAAAAAAACCCATTAAACTCAAAAAAAAAAAAAAACTCCAGAATTTTTATTTAAACAAAAAAAAAAAAACTTAAAAAAAAAAATTTTTTTTTTAAAAAAAAAATAAAAAGAAATAAATTAAAATTAAAAAAAAAAAAAATTAAAATTTTTTaaaaaatttaa                                                                                                                    >  1:506859/1‑240 (MQ=255)
                                                                                                                                       aCTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTGTTAAAACCATCATTTACCTCAAAAAAAAAAAAAAATTCCAGATTTATTTATTTATAAAAAAATAAAAAAATTAAAAAAAATAATTTTATTTTAAAAAAAAAAATAAAAAGGAATAAATAAAAATTAAAAAAAAAAAAAAATAAAAATTTTTAAAAATTTATGaaa                                                                                                                 >  1:641006/1‑248 (MQ=255)
                                                                                                                                            aTCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCAAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATAc                                                                                                            <  1:497518/249‑1 (MQ=255)
                                                                                                                                             tCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACaa                                                                                                          <  2:286835/250‑1 (MQ=255)
                                                                                                                                               aaTTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACaaa                                                                                                         <  1:725956/249‑1 (MQ=255)
                                                                                                                                               aaTTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAAt                                                                                                        <  2:75964/250‑1 (MQ=255)
                                                                                                                                                aTTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATa                                                                                                       <  1:537325/250‑1 (MQ=255)
                                                                                                                                                    tCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAaca                                                                                                    <  2:101966/249‑1 (MQ=255)
                                                                                                                                                    tCACATAAAGTATGAACTGGATATCTTTATTCATAAGAACTAATCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTACAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAAGCATTAATTCAATATTAAAAAAATAATAGGATAAAATTTCTTAACGATTTAAGAATCATACAAATAaca                                                                                                    <  2:571076/249‑1 (MQ=255)
                                                                                                                                                        ttAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTTTAAAAAAACACCTTAGACTCAAAAAAAAAAAAAAACTCCCAAATTTTTAATTTAACAATTAAAAAAAAAATTAAAAAAAAAAATTTTATTTTAAAAAAAAAAATAAAACACACTAATTCACAATTTAAAAAATAAAAAATTAAAAATTCTTAAACAATTTAAAAACATACAAATAACACattt                                                                                               >  2:534499/1‑249 (MQ=255)
                                                                                                                                                        ttAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATTTAAAAAAAACACATTAACTCCAAACAAAAAAAAACATCTTAAATTATTAATTTACAAAAACAATAAAAAATTAAAAAAAAAAACGTTATTTTTTAAAAAAAAATAAAAAGCATTAAATCAATATTAAAAAAAAAAAAAATTAAAATTTATTAATTATTTAAAAAACATAAAAAAAACACttta                                                                                               >  2:55231/1‑249 (MQ=255)
                                                                                                                                                         tAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATTTAAAAACACACATTATCCTCAAAAAAAAAACAAAAATTCCGATTTTTTACTTTATCAATGAAAAAAAAAAATAAAAAAAATAATTTTATTTTTAAAAAAAAATTAAAAAGAAATAATTTAATAATAAAAAAAAAATAAATTAAAAATTTTTAATAATTTAATAATAAATAAAAAAAAACTTTGa                                                                                              >  2:32196/1‑250 (MQ=255)
                                                                                                                                                                  aaCTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATTTAAAAACACTCATTATCCTCAAAAAAAAAAAAAAATTCCCGAATTTTTTCTTTACCAATGAAAAAAAAACATAAAAAAAATAATATTTTTTTTAAAAAAAAATTAAAAAGAATTAATTTAAAATTAAAAAAATAAAAAATTAAAAATTTTTAAAGATTTAAAAATAATAAAAAAAACACATTTATTTaatttt                                                                                     >  2:616023/1‑249 (MQ=255)
                                                                                                                                                                  aaCTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAaattt                                                                                      <  1:675945/249‑1 (MQ=255)
                                                                                                                                                                  aaCTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGCTTTATAAAACCCCACATCTGCCCCCCAATAAAAAAAAACTTCCACATTTATTTTTCTAACAAAGAACAAAAAATCTTAAAAATAAACTCTTTTTCCTAAAGAAAAAATAAAAAGCACTAATTTCTAATTAAAAAAATAATAAATTTTAATTTTTTTATATTTTTAAAATTATAAAAATAACCATTTTATTTaattt                                                                                      >  1:143669/1‑249 (MQ=255)
                                                                                                                                                                     tGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTTTAAAAAAAATCATTTACCTCAAAAAAAAAAAAAAAATTCAGATTTTTTATTTTAACAAAGAAAAAAAAAATTAAAAAAAAAAATATTATTTTAAAAAAAAAAATAAAAAGAATTAAATTAATATTAAAAAAAAAAAAAAATAAAAATTTTTTAAGAATTTAAAATAAAAAAAAAAAAAAATTTATTAtatttaatt                                                                                  >  2:454249/1‑250 (MQ=255)
                                                                                                                                                                              ttATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTTTTTAAAAACACTCATTAACCTCAAAAAAAAAAAAAAAATCCAGATTTTTTACTTAAACAATGAAAAAAAAAATTAAAAAAAAAACTGTTATTTTAAAAAAAAAAATAAAAAGCATTAATTTAATATTATAAAAATAATAAAATAAAATTTTTTAAAGATTTTAGAATAAAACAAAAAACAATTTTATTAAATTTTAttttttttttt                                                                         >  2:158243/1‑245 (MQ=255)
                                                                                                                                                                               tATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATTTAAAAAAACTCCTTATCCTCCAAAAAAAAAAAAAAAATCCAAATTATTTTTTTAACAAAAAATAAAAAAAATAAAAAAAAAACATTTATTTTAAAAAAAAAAATAAAAAAAATTTATTCAATAATTAAAAAAAAAAAAAAAAAAAATTTTTTAAAAATTTAAAATAATAAAAAAAAAAAATTTTTTAAATTTAAttttttttttt                                                                         >  2:19021/1‑244 (MQ=255)
                                                                                                                                                                                  tCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAAACACTCATTATCCTCAAAAAAAAAAAAAAAATCCAGATTTTTTTCTTTAACAAAAAAAAAAAAAACTAAAAAAAATACTTTTTTTTTTAAAAAAAAAATAAAAAGAATTAATTTAAAATTAAAAAAATAAAAAATAAAAAATTTTTTAAGATTTAAAAAAAAAAAAAAAAAAACATTTATTAAATTTAAtttttttttttttt                                                                      >  1:606338/1‑241 (MQ=255)
                                                                                                                                                                                    aTAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAAt                                                                   <  1:581666/250‑1 (MQ=255)
                                                                                                                                                                                        gAACTAATCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATtgtg                                                               <  2:314404/250‑1 (MQ=255)
                                                                                                                                                                                           cTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAAc                                                            <  1:653503/250‑1 (MQ=255)
                                                                                                                                                                                                catcaACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACctct                                                        <  2:541424/249‑1 (MQ=255)
                                                                                                                                                                                                    aaCAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGAATTATTTCTTAACCAATGAATAACAATCTTAAAAAATATACTGTTAGTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAGAAAAATAATATATTAAAATTTCTTAACAATTTAAGAATCATACAAATAACACTTAGATTAAATTTTATTTTTTGTATCGATATTTGTGAGCCTCTCTGGc                                                   <  2:659382/250‑1 (MQ=255)
                                                                                                                                                                                                                   cGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTAtttt                                    >  1:666654/1‑250 (MQ=255)
                                                                                                                                                                                                                    ggTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTg                                   <  2:204368/250‑1 (MQ=255)
                                                                                                                                                                                                                            tAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACAt                              >  1:171676/1‑248 (MQ=255)
                                                                                                                                                                                                                              aaaaCCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAg                           >  2:596110/1‑250 (MQ=255)
                                                                                                                                                                                                                                aaCCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGgt                         >  1:5505/1‑250 (MQ=255)
                                                                                                                                                                                                                                  ccACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGgtgt                       <  2:341703/250‑1 (MQ=255)
                                                                                                                                                                                                                                  ccACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGgtgt                       >  2:78885/1‑250 (MQ=255)
                                                                                                                                                                                                                                             ccTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGGTGTTACGTGGatat            <  1:119234/250‑1 (MQ=255)
                                                                                                                                                                                                                                              cTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGGTGTTACGTGGATATg           >  1:239966/1‑250 (MQ=255)
                                                                                                                                                                                                                                                     aaCAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGGTGTTACGTGGATATGTTGCt      >  2:203576/1‑250 (MQ=255)
                                                                                                                                                                                                                                                        aaaGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGGTGTTACGTGGATATGTTGCttat   >  2:241342/1‑250 (MQ=255)
                                                                                                                                                                                                                                                         aaGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGGTGTTACGTGGATATGTTGCttatt  <  2:676963/250‑1 (MQ=255)
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                
ATGATAACAAGTCCGGTTTATCCCCGCTGATGCAGGGAACATAATAAAAACTTTAACTAGTTCGGTTTATCCCTGTTTTTACAAGGAATATTAACTACACTCGATGTCTTTAGAATAAAAGACAATACGAATCGCACTTTATCAATTTTCACTTAAAGTATGAACTGGATATCTTTATTCATAAGAACTATTCATCAACAGCGTATAGAGGCGGTTATGTAAAACCACTCATTAGCCTCAAAACAAAGACAAACTTCCAGATTTATTACTTAACCAATGAATAACAAGCTTAAAAAATATACTGTTATTCTAAAGAAAAAATTAACAGGCATTAATTCAATATTAAAAAAATAATAGATTAAAATTTCTTAACGATTTAAGAATCATACAAATAACACTTTGATTAAATTTAATTTTTTGTATCGATAATTGTGAACCTCTCTGGCATGGAGAACTATTTTGAACATGAGGTGTTACGTGGATATGTTGCTTATT  >  NZ_CP009273/2896827‑2897321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: