| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,145,167 | 0 | G | T | 34.0% | 39.1 / 12.9 | 51 | intergenic (+40/+25) | yegJ/pphC | DUF2314 domain‑containing protein/protein‑serine/threonine phosphatase PphC |
| Reads supporting (aligned to +/- strand): ref base G (20/13); new base T (3/14); total (24/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.39e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACTT > NZ_CP009273/2144927‑2145415 | tttATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑Ca < 1:940013/250‑1 (MQ=255) ttGTTAAAAACGAAAAATATGCCCAGGAGTGGAAAATAAAAAAAAAAGATTTTTCAGCCTGGATGTATCCGCGCGGGAATAAAATTTACGGCGTTTATCCCATTGATCTTTTATTGGTCACCTACCAAAAAGAAAAACCCGACGAGCTAAGAGCAAAATTATTTCGCTAACCAGCCTTTATTTTTATTTTTTAAC‑CT‑GGCGTTTGAA‑TTTTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAg < 1:79427/249‑1 (MQ=255) aaaCGTAAAATATGGCCAGGAGGGAAAAATCAAAAAAGAAAATATTTAAGACTGAATGTTTACGCGGGGGAATAAATTTTACGGCGGTTATACCATTGATCCTTTATTGGCCCCCTATCAAAAAGAAAAAGCCGACGAACAAAGAACAAAATTAGTTCATTAAGCAGCTGTTATATTTTTTGTTAAAA‑CG‑GGCGTTTAAT‑TTGTTTTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:146629/250‑1 (MQ=255) gaaaTAGGGCCGGGAGTGAAAAAACAAAAAAAAAGATATTTCAGACTGGATGTATGCGCGGGGAGAAAAAATTTACGGCGTTTATCCTATTTATCCTTTATTGCACCCCTACAAAAAAAAAGAAGCCGACGAGCAAAGAACAAAATGATTTCGCTACGCAGCCTTTATATTTATTGTTAAAA‑CG‑GGCGGTTGAA‑TTGTTTTCTT‑AAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 2:726116/248‑1 (MQ=255) taagagggCAAGAAGTGAAAAATAAAGAAAAAATATTTTTCATCCGGGATGTAAACGCGGGGGTAAAAAATTTACGGGTTTTATACCTTTTATTTTTTTTTGCTCACCTAACAAAAAGAAGAAGCCAACGAGCAAAGAAAAAATTTATTTCGTTAATCACCCTTTATTTTTATTTTTAAAA‑CG‑GGCGGTTGAA‑TTTTTTTCTC‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 2:713271/244‑1 (MQ=255) aaTATGGCCAGGAGTGAAAAATAAAGAAAGAATATTTTTCAGACTGGATGTATCCGCGGGGGAAAAAAATTTACGGCGTTTATACCATTGATCTTTTATTGGTCCCCTATCAAAAAGAAGAAGCCGACGAGCTAAGAGAAAAATTAGTTCGCTAATCAGCCTTTATTTTTATTTTTTAAA‑CG‑GGCGGTTGAT‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 1:464195/250‑1 (MQ=255) atatGGCAAGGGGTGAAAAAAAAAAAAAAAAATTTTTTCAGTCTTGATGTATCCGCGGGGGAATAAATTTTACGGCGGTTATCCTTTTGTTCTTTTATTGGTCCCCTACCAAAAAGAAAACGCCGACGAGCAAAGAGCAAAATTAGTTCTTTAATCAGCCTTTATTTTTATTTTTTAAC‑CG‑GGGGGTTGAA‑TTTTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGttt < 2:323899/250‑1 (MQ=255) tGGCAAGGAGTGAAAAAAAAAAAAAGAAGATATTCCAGACTGGATGTATACGCGGGGGGAAAAAATTTACGGCGGTTATACCATTGTTCTTTTATGGGTCACCTACCAAAAAGAAAAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAATCAGCCTTTATTTTTTTTGTTAAAA‑CT‑GGCGTTTGAT‑TTTTTGTCTC‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:269632/250‑1 (MQ=255) gaaagaaGATTTTTCAGACTGGATTTATCCGCGCGGGAAAAAAATTTACGGCGTTTATCCCTTTGACCTTTTATTGTTCCCCTATCAAAAAAAAAAAGCCGAGGAGTAAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CG‑GGCGGTTAAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTa < 1:727783/250‑1 (MQ=255) cAGAATGGATGTATACGGGGGGGAATAAATTTTGCGGGGTTTATCCTTTTTATCTTTTAGTGGTCACTTCTCAAAAAGAAGAAGCCGACGAAATAAGAGCAAAATTAGTTCGCTAATCAGCCTTTTTATTTTTTGTTAAAA‑CG‑GGGGGTAGAT‑TTGTTTTCTT‑AAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGa < 2:117023/249‑1 (MQ=255) gcgcgGGAAAAAAATTTGCGGCGTTTATCCATTTGTTCCTTTATTGTTCCCCTACCAAAAAAAAGAAGCCGCCGAGCAAAGAAAAAATTTGTTTCGTTAATCAGCCTTTATTTTTTTTTTTAAAA‑CG‑GGGGTTTAAT‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACa < 1:447646/250‑1 (MQ=255) gcggcgtTTATTCCTTTGATCCTTTATTGTTCACCTACCAAAAAGAAGAACCCGACAAGCAAAGAACAAAATTATTTCGCTAACCAGCCTTTATATTTATTGTTAAAA‑CG‑GGCGGTTGAT‑TTGTTGTCTT‑AAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATc < 1:883186/248‑1 (MQ=255) cggtaaccccATTGCTCTTTTATTGCTCCCCTATCAAAAGAAAAAACCCGACGAACAAAGA‑AAAAATTTTTTTGGTTTTTCGTCTTTTTTTTTTTTTTTTAAATCG‑GGCGTTTAAT‑TTGTTGTCAC‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAgtt < 2:59057/242‑1 (MQ=255) ttATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAgttgtt > 1:401441/1‑250 (MQ=255) cttttGATCTTTTATTGTTCCCCTAACAAAAAAAAAAACCCAACGAATAAAAAAAAAATTTAGTTCTCTAATCCTCTGTTATATTTATTGTTAAAA‑CG‑GGCGTTTGAA‑TTTTTGTCTT‑AAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGc < 2:86297/247‑1 (MQ=255) ccATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGGCAAAAACTGCTTTAACAAATCAGGTAATAAATCGAGGTGTTCCTGc > 1:686407/1‑250 (MQ=255) cATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTTTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAACGCCAGTGCCAACGGTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGGAATAAATCGAGGTGTTCCTGCg > 2:835679/1‑250 (MQ=255) ttGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCAAGCTTTATCATCATCCGTACGCTCGTTTACCGCCGGGGTGGACCAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTTCTGCGtt > 1:958208/1‑250 (MQ=255) aTCTTTTATGGGCCACCTACCAAAAAAAAAAGGCCGACGAGTAAAGAAAAAATTTAGTTCATAAATCAGCGGTTATTTTTATTGTTTAAA‑CG‑GGGGTTTGAT‑TTTTTGTCTA‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTtgct < 1:330958/250‑1 (MQ=255) tCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑TAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTTTCATCATCCGTACGCTCGTTTACCGCCGGGCTGGGCAAAAACTGCTTTAACAATTTCGGTAATAAATCCAGTTGTTCCTGCGTtgctt > 1:269000/1‑249 (MQ=255) cttttATTGGCCCCCTACCAAAAAGAAGAAGCCGACGAGCTAAGAGAAAAATTATTTCCATAACCAGCTGTTATTTTTATTTTAAAAC‑CG‑GGCGTTTAAT‑TTGTTGTCTT‑CAC‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTtgctg < 1:714582/247‑1 (MQ=255) cttttATGGGCCACCTCACAAAAAAAAGTACCCAACGACAAAAGAAAAAAATTTTTTCTATAATCCGTTTTTATTTTTTTTGTTAAAA‑GG‑GGCGTTTGAA‑TTTTTCTCTC‑AAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTtgct < 2:790637/246‑1 (MQ=255) gTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTTGA‑TTGTTGTCTT‑CCA‑CCGCCA‑TGAGAAAATCACTCTGCCCACCGCGCCAGGGCCCACGTTTTATCATCATCCGTACGCCCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATAGAGTTGTTCCTGCGTTTCTGCCGCCCGTcc > 2:270679/1‑250 (MQ=255) cTATCCAACAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGGA‑TTTTTTTTTT‑CCA‑CCCCCA‑TTTGAAACCCCCTCTTCCCCCACCGCCAGTGCCAACGTTTTATTCTCATCCGTACCCTCCTTTTCCGCCGGGGTGGACCAAAACTGCCTTTACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCCCCACTTCATTg > 2:270966/1‑249 (MQ=255) cTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTTGA‑TTGTTTTTTT‑TAA‑CCGCCA‑TTAGAAAAACACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATTCCTACGCTCGGTTTCCCCCCGGGTGGGCAAAAACTGCTTTAACAATTCCGGTAATTAATCGAGTTGTTCCTGCGGTTCTGCCCCCCGTCCCttt > 2:307420/1‑248 (MQ=255) tATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTTTCTT‑TCA‑CCCCCA‑TGAGAAACTCAATCTGCCCACAACGCCAGTGCCCACGCTTTATCATCATCCCTACCCTCGTTTTCCCCCCGGCTGGGCAAAAAATTCTTTTACAATTCAGGGAATAAATCGAGTTTTTTCTGCGTTTCTGTCCCCAGACCCTTgt > 2:10292/1‑248 (MQ=255) caaaaaGAAGACGCCGACGAGCAAAGAAAAAATTTAGTTCGATAACCCGCTTTTATTTTTTTTTTTAAAA‑CG‑GGCGTTTAAT‑TTTTTTTCTT‑CAC‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaaa < 1:918352/248‑1 (MQ=255) agaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCGCCC‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAAATGCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACggggga > 1:340767/1‑247 (MQ=255) agCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTTTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCCGTCCATTGAAAAAAGGGGGaaag > 1:670041/1‑249 (MQ=255) gccgacagccaaaGAGAAAAATTAGTTCGTTACTCTGCGTTTATTTTTTTTTTTAAAC‑CG‑GGCGGTTAAT‑TTTTTTTCTC‑AAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaagaa < 1:757134/239‑1 (MQ=255) acgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCCCCA‑TGAGAAACTCACTCTGCCCACAGCGCCCGTGCCCACGTTTTTTCCTCATCCGTACGCTCGTTTACCGCCGGGCTGGACCAAAACTGCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCCGTCCATTGAAAAAAGGGGGAAAGAAAGGc > 2:54369/1‑250 (MQ=255) cgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGATGAA‑TTTTTGTCCT‑CAA‑CCCCCC‑CTAGAAACTCACTCTGCCCCCAGCGGCAGTGCCAACGCTTTTTCATCATCCGCACGCCCCTTTACCGCCGGGCCGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGCTGCTGCCGCCCGCTCATTGAAAAAAGGGGGAAAGAAAGGca > 2:661519/1‑250 (MQ=255) aaGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTTAA‑TTGTTGTCTT‑CAA‑CCGCCC‑TTAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCCTTTTCCGCCGGGCTGGACAAAAACTGCTTTTACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGGAAAACGGGGTAAAGAAAGGCACATgag > 1:947759/1‑250 (MQ=255) agaaaaaatTTATTTCGCTAATCACCCTTTATATTTTTTTTTAAAA‑CG‑GGCGTTTAAT‑TTTTTTTCTC‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgagg < 1:931157/245‑1 (MQ=255) gagCAAAATTAGTTCGCTAATAAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTTAA‑TTATTGTTTT‑CAA‑CAGCCATTGGGAAAAT‑ATACTGCTCATAACGCCCGTGGCAAAGTTTTATCATAATCCGTTCGCTCGTCTTAATCCGGGCTGGAGAAAAACAGCTTTAACACTTCCGCAAAAACATTGAGTTGTTTCTGCGCTTCTGGCGACTGTGCATTGAAAGACAGGGTGAGGAAAgggaaaaagagg > 2:337153/1‑240 (MQ=255) gaaaaaTTAGTTCG‑TAAATAGCCCTTTATTTTTTTTTTTAAA‑GG‑GGGGGTTTAATTTGTTGTCTA‑AAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGgaga < 1:538901/248‑1 (MQ=255) cAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTTAA‑TTGTTGTCTT‑CAA‑CCGCCC‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGaa > 1:3537/1‑250 (MQ=255) ttAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGCA‑TTGTTGTCTT‑CAA‑ACGCCA‑TGAGTAAATTACCCTGCCCCCCGAGCCCGTTCCCACGTTTTTTCACCATCCCTTCCCTCGTTTTCCCCCAGGCCGGATAAAAAATCGTTTAACAATTCTGGGAAACAATCGAGATTTTCCTCCGCTGTTTCCCGCCGGCCTTTTAAAAACGGGGGAAAAAAAGGTCCATGAGGAGAATTAtt > 2:117035/1‑249 (MQ=255) gTTCTCAAATCAGCTTTTATTTTTATTGTTAAAC‑CT‑GGCGGTTAAT‑TTTTTGTCTT‑CAC‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCa < 1:136624/249‑1 (MQ=255) ttCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGGA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGCACGCTCGTTTACCCCCGGGCTGGACAAAAAATGCTTTTACAATTTAGGTAATAAATAGAGTTGTTCCTTCGTTTCTGCCGCCCGTCCATTGTAAAACGGGGTAAAGAAAAGGAACTGAGGAGAATTATCCAg > 2:693804/1‑249 (MQ=255) cTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGGA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAAATCACTCTGCCCACAACGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGGTTATCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCatat > 2:202161/1‑250 (MQ=255) aaTCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAAATTACTCTGCCCCCAGCGCCAGGGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGGAATAAAACGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGGAAAGAAAGGCACATGAGGAGGATTAATCAGCCTAttt > 2:717161/1‑250 (MQ=255) ttcacctgttttttttttttttAAA‑ATGGGCGGTTGAA‑TTTTTGTCTC‑CAC‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATAttt < 1:647891/237‑1 (MQ=255) atttattGTTTAAA‑CT‑GGCGGTTTAA‑TTTTTTTCTT‑TAA‑ACGCCA‑TTAGAAAATCAATCTTCCCACAGAGCCCGTGCCCACGTTTTTTTATCATCCGTACGCTCGTTTTCCCCCCGGCTGGGCAAAAAATACTTTAACAAATTAGGTAATAAAACGAGTTGTTTCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGGAAAGGAAAGGACATGAGGAGAATTATTCCGCATATTTTACGCCaagccgt > 2:521807/1‑244 (MQ=255) ttGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATa > 1:324085/1‑250 (MQ=255) tttttaaagcgggCGGTTAAT‑TTTTTTCCTT‑CAA‑CCGCCA‑GGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGAt < 2:92167/238‑1 (MQ=255) aaa‑CT‑GGCGGTTTAA‑TTGTTTTCTT‑CAA‑CCGCCA‑AGAAAAAAACACTCTGCCCACAACGCCAGTGCCAACCTTTTTTTATCATCCCTACGCCCGTTTACCGCCGGGCTGGACAAAAAAAGCTTTTACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCCGTCCATTGAAAAACGGGGGAAAGAAAAGCACATGAGGAGAATTATCCCGCAAATTTAAAGCCAGTCGCTGGGTACCAAcc > 2:466131/1‑250 (MQ=255) gcggggggTTGAT‑TTTTTGTCTA‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGt < 1:577493/244‑1 (MQ=255) ggggCGGTTG‑A‑TTGTTTCCTTCCAG‑CCGCCA‑TGAGAAACTCGCTCTGCCCACGGCGCCAGTGCCAACGTTTTATCATCATCCGTACCCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTa < 1:502140/248‑1 (MQ=255) ggttttGAT‑TTGTT‑TCTT‑CAACCCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt < 1:519321/246‑1 (MQ=255) ttGAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAtgctg > 2:647191/1‑250 (MQ=255) tgttgtCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAATGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACtt > 1:743814/1‑250 (MQ=255) gttgtCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACtt < 1:842607/249‑1 (MQ=255) | TTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CT‑GGCGGTTGAA‑TTGTTGTCTT‑CAA‑CCGCCA‑TGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTGCAACTT > NZ_CP009273/2144927‑2145415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |