| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,360,878 | 0 | T | C | 41.1% | 64.5 / 15.9 | 60 | I110T (ATC→ACC) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| Reads supporting (aligned to +/- strand): ref base T (14/19); new base C (0/23); total (18/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.71e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCG > NZ_CP009273/2360632‑2361123 | ggCGCACCTCCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑ccc < 1:908236/250‑1 (MQ=255) ccaccacAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCGGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCGCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCt < 1:763820/250‑1 (MQ=255) ccTGTGAATCGTTGGGAAAAGAGTAGGAGATCCTGTTGATGGAAGACGGCAGAAGCAAAAATCCCGCGAATATGTTGGTCGAAGCCTCCCAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTCCCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCaaa < 2:830259/250‑1 (MQ=255) aaTCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑ATGTAAGTTTCTGGCGACTTTTTTTTTTTACTTGTTGCCC‑GTGTCC‑CAAAACCCCCACAAGAAAT‑CACCCCCCCTGTGGCAAACACCGa > 2:603883/1‑250 (MQ=255) ttGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGGTT‑T‑TGTGACGGTTCTGGGGGCCTTATTTTTATCCCTTATGCCG‑ATCTCC‑ACAATCCCCCCGAAAAAAA‑ACCCCCCCCGGGGGGAAAAACAGATGAAg > 1:457162/1‑250 (MQ=255) gAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGGTT‑T‑AGTCACGGTTATGGCGGCTTAAATATTTCCCTTGATGCCG‑ATCTCC‑AGAAACCCCCAGGAAAAAA‑CCCCCGCCTCGTGGGAAAAACCCCTGAAG‑GGTat > 1:676034/1‑249 (MQ=255) gagaagaagaCCCGGCTTATTGATGACGCCAGTGGCAATAATTCCGCGAATATGCTGGCAGAACCCCCAAAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCCCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTacgacg < 2:149082/243‑1 (MQ=255) gagTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTacgacg < 1:340618/250‑1 (MQ=255) gTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTg < 1:380625/250‑1 (MQ=255) gaTCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGGTT‑T‑AGTCACCTTACTTGCGACTTTATTATTTTTCTTTATGGCG‑CTCTCC‑CCAATACGCCCGAAGAAAA‑ACCCCCCCTCGTGGCAAAACACGACGAAGAGTTacaagtgggcggt > 2:369438/1‑239 (MQ=255) aTCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGa < 1:105878/250‑1 (MQ=255) ccggcggattgatGACGGCAGTAGCAATAATTCCGCGCAAATGCGGGTCGAAGCCCCACAAGCGGAGACCAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACt < 2:400482/244‑1 (MQ=255) gattgatGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGGTT‑C‑CGTCACGGTACTTGCGGCTTAATTTTTTCCCTTTATGCCG‑ATCTCC‑CGAAACCCCCAGAAAAAAA‑CCCCCCCCCGGTGGGCAAAACCGCAGAAG‑GGTACGACGTGGGAGGGGCGGTACGc > 1:273399/1‑250 (MQ=255) attgatGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCAAAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGc < 1:723916/249‑1 (MQ=255) aCGGCAGTAGCGATAATTCCGCGCATATGCTGGTGGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTGGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAAcc < 1:753884/249‑1 (MQ=255) ccGCGCATATGTGGGGCGAAGCCACACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTCCCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCg < 1:790551/250‑1 (MQ=255) gcATAGGCTGTCCAAACCCTCAAAAGGGAAGAACAGCCATTTTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGAAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCCCGTTACTGGCGACTTAATTATTCCCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTaaa < 1:29412/250‑1 (MQ=255) tGGGCGAAACCCCAAAAGGGGGAAACAGCCCTTTTTTGTTTTTTTTTGTTACACCGCAATGCCGGGAAACATTA‑GGCGATTTTTCCGGGATT‑C‑AGTCCCTTTCCTGGCGATTTAATATTTCCCTTTGATGCCA‑ATCTCC‑AGATCCCCCCAGAAGAAAC‑CCCCCGCCGGGTGGCAAAAGCCGATGAAG‑TTTCCGACGTGGTAGGGCCTGTACGCAAGAACCGCCAGGACAGCTGGTTTCGTAAAAcc < 2:569294/246‑1 (MQ=255) gTCGAAGCCTCAAAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTAA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTCCCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGa < 1:546781/250‑1 (MQ=255) aggCCTCACAAGCGGAGAACAGCCATTTTGTGTCTATTTTGCTTA‑ACCGCAATTCCGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAAAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAgat < 1:230969/248‑1 (MQ=255) aGCCATATTGTGTCTATTTTGCTTA‑ACCGCATTTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCCCGTTACTGGCGACTTAATTATTCCCCTTGATGCCG‑ATCTCC‑AGAACCCGCCAGAAAAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAgc < 1:916242/250‑1 (MQ=255) ttttttCTATTTTGCTAA‑CCCGCAATTACGGGCACCATTC‑AGCGATTAGGGCGGGATT‑C‑AGCCCCTTTATTGGCGACTTATTTTTTCCCCTTGCTCCCG‑ATCCCC‑AGAACCCGCCAGAAAAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTCCGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGcacca < 2:492842/244‑1 (MQ=255) ttttttGCTTA‑ACCGGAATTTCCGGCCAAATTCAAGCATTTTGGGGGGGATC‑C‑AGCCCGTTTACTGGGAATTTAATTATT‑CCCTTGGAGCCC‑AACCCCAAAAACCCGCAAGAAAAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCa < 2:259934/247‑1 (MQ=255) ttttGCTAA‑ACCGCAATTAGGGGCAACATCC‑GGCGATT‑TGGCGGGATTCC‑AGCCACTTTCCCGGCAACTTAATTATTCCCCTTGTTCCCA‑ATCCCC‑AGAATCCCCCAGAAAAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTCCGCCAAAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAg < 2:295059/249‑1 (MQ=255) tttGCTAA‑ACCGCAATTACGGGCAACATTC‑AGCGATAATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTCCCCTGGATGCCG‑ATCCCC‑AGAACCCGCAAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGc < 1:357326/249‑1 (MQ=255) ttGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTAGGGCGGGATT‑C‑AGTCACGTTACTGGCGATTTAATTATTCCCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCg < 1:949510/249‑1 (MQ=255) ggaaccATTC‑AGCAATAGTGG‑GGGATT‑CAAGTCCTGTTCCTGGAGCTTAAATTATCCCCCTGGATGCCG‑ACCTCA‑AGAACCCGCCAGAAAAATC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTAACGACGTGGTAGGGACTGTACGCCAAAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTAt < 2:965078/245‑1 (MQ=255) aaCATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTCCCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTAtgct < 1:505985/250‑1 (MQ=255) tGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAGTCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCg > 2:113430/1‑250 (MQ=255) ggCGGTATT‑C‑AGTCACGTTCCTGGCGTCTTAATTATTCCCCTTGATGCCG‑ATCCCC‑AGAACCCGCCAGAAGAATC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCg < 1:582902/249‑1 (MQ=255) ggATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCata > 2:845708/1‑250 (MQ=255) gtatgaattCACGTTACGGGCGACTAAATTATCCCCCTGGAGCCCG‑ACCTCA‑AGAACCCGCAAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCata < 2:719127/242‑1 (MQ=255) tt‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTg > 2:451924/1‑250 (MQ=255) cattCACTTTACGGGCATCTAAATTTTCCCCCTTGATCCCG‑TTCCCC‑AAACCCCCCAAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTc < 2:704441/247‑1 (MQ=255) tCACGTTACTGGCGACTTAATTATTCCCCTTGATGCCG‑ATCTCC‑AGAACCCGCCAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgat < 1:941670/250‑1 (MQ=255) tCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgat > 2:734990/1‑250 (MQ=255) tCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgat > 2:916258/1‑250 (MQ=255) cACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg > 2:346395/1‑250 (MQ=255) aCGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCAGTCATATTGTcgatgc > 1:727933/1‑250 (MQ=255) ttACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCCAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgctgcgat > 2:848146/1‑250 (MQ=255) cggcagatttAATTATTCCCCTTGAGCCGG‑ATCTCA‑AAAACCCGCAAAAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGtt < 2:207505/242‑1 (MQ=255) cTGGCGACTTAATTATTCCCCTTGATGCCA‑ATCTCC‑AAATTCCGCCAAAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑TTTACGACGTGGTAGGGACTATACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGtt < 1:601676/250‑1 (MQ=255) cTGCCGATTTAATTATTCCCTTTGATGCGA‑ATCCCA‑AGAATCCGCCAAAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGAGGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGt < 2:616310/249‑1 (MQ=255) ggCGACTTAATTATTACCCTTGATGCCA‑ATCCCC‑AGAACCCGCCAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGc < 1:603883/250‑1 (MQ=255) cGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCAc > 1:194729/1‑250 (MQ=255) cGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGACGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCAc > 2:571245/1‑250 (MQ=255) caCTTAATTATTCCCCTTGATCCCG‑ACCCCC‑AAAATCGGCCAGAAAAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACt < 2:273399/249‑1 (MQ=255) attcCCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCACACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGaa < 1:871821/249‑1 (MQ=255) taCCCTGGATGCCG‑ATCTCC‑AGAACCCGCCAGAAGAAAC‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACg < 1:8136/249‑1 (MQ=255) ccTTTATGCCCAATCTCC‑AAAACCCG‑CAGAAAAAATCCCCCCCCCTGGTGGCAAAAGCCTATAAAG‑GTTACGCCTTGGTGGGGACTGTCCCCCAGACCCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcag < 2:335750/250‑1 (MQ=255) tGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCtt > 1:623904/1‑249 (MQ=255) cG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTAta > 2:38893/1‑249 (MQ=255) caaGAACCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGATTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGAtt < 1:607639/248‑1 (MQ=255) aaGAACCCGCCAAAAAAACC‑CCCCCGCCGGGGGGAAAAAGCCGAGGAGG‑GTTACGAGGTGGTAGGGACGGTCCGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTc < 2:397919/249‑1 (MQ=255) gAACCCCCCAAAAGAATC‑CCCCCGCCTGGTGGCAAAAGCCGATGAGG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGATTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTg < 1:508541/250‑1 (MQ=255) caaaaaaaaaT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAata < 1:452676/243‑1 (MQ=255) agaagaAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATc > 1:133102/1‑250 (MQ=255) aagaaAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCtt < 1:684495/250‑1 (MQ=255) aaaaaaC‑CCCCCGCCTGGTGGCAAAAGCCGAGAAAG‑GTTACGCCGTGGTAGGGACTGTACGCAAGACCCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCtt < 2:139735/247‑1 (MQ=255) aaaaC‑CCCCGGCCTGGGGGCAAAAGCCGAGGAAG‑TTTACGACGTGGTAGGGCCGGTACCCCAGACCCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTcg < 2:752604/249‑1 (MQ=255) | GGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTA‑ACCGCAATTACGGGCAACATTC‑AGCGATTATGGCGGGATT‑C‑AGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCG‑ATCTCC‑AGAATCCGCCAGAAGAAAT‑CCCCCGCCTGGTGGCAAAAGCCGATGAAG‑GTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCG > NZ_CP009273/2360632‑2361123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |