Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092734,526,0140AT45.7% 62.5 / 62.8 71intergenic (+166/+102)yjhR/BW25113_RS26295helicase YjhR/HNH endonuclease
Reads supporting (aligned to +/- strand):  ref base A (1/37);  new base T (32/0);  total (34/37)
Fisher's exact test for biased strand distribution p-value = 3.79e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CGTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAAT  >  NZ_CP009273/4525769‑4526262
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                            
cgTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGa                                                                                                                                                                                                                                                           <  2:220475/249‑1 (MQ=255)
 gTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAAt                                                                                                                                                                                                                                                         <  1:760218/250‑1 (MQ=255)
 gTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAAt                                                                                                                                                                                                                                                         <  1:771077/250‑1 (MQ=255)
  tCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATg                                                                                                                                                                                                                                                        <  2:377693/250‑1 (MQ=255)
  tCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATg                                                                                                                                                                                                                                                        <  1:652194/250‑1 (MQ=255)
          gtACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATgtaagaaa                                                                                                                                                                                                                                                 >  1:704921/1‑249 (MQ=255)
               gtggtgAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaa                                                                                                                                                                                                                                           <  1:349459/250‑1 (MQ=255)
                tggtgAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaag                                                                                                                                                                                                                                          <  2:53197/250‑1 (MQ=255)
                tggtgAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACATCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaag                                                                                                                                                                                                                                          <  2:119268/250‑1 (MQ=255)
                  gtgAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaagc                                                                                                                                                                                                                                         <  1:33478/249‑1 (MQ=255)
                        gCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataata                                                                                                                                                                                                                                  <  1:774297/250‑1 (MQ=255)
                         cGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGGATGAAAAGAAAAgcaaaaaaaaaaa                                                                                                                                                                                                                                  >  1:340609/1‑240 (MQ=255)
                          gTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataatata                                                                                                                                                                                                                               <  1:33717/250‑1 (MQ=255)
                            aaaaaaTGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataatataat                                                                                                                                                                                                                             <  2:176034/250‑1 (MQ=255)
                             aaaaaTGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAAtaatataata                                                                                                                                                                                                                           <  1:72747/250‑1 (MQ=255)
                                aaTTAAATAAAGGCAAAATATGGTAGTCTGGAGTAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCTAGTCGCCTTGCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTATGCATAATGCGCCTGGGATTAATGGCAGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATg                                                                                                                                                                                                                        <  2:584110/250‑1 (MQ=255)
                                      aTAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATTAAAGAAAATACAAACAATAAAACaataatattacta                                                                                                                                                                                                                  >  2:586760/1‑243 (MQ=255)
                                        aaaGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGTGTGAAAAAAAAAGAAAGAAAAAATAaaaaaaaagacttatt                                                                                                                                                                                                                >  2:143776/1‑240 (MQ=255)
                                         aaGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTTGGATGAAAGAAAAAGCAAGAAAAAAAAAAATAATAAGCTAAttt                                                                                                                                                                                                              >  1:721933/1‑250 (MQ=255)
                                          aGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTc                                                                                                                                                                                                             <  1:430546/250‑1 (MQ=255)
                                                   atGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGGATTAAAGAAAAAACAAACAATAATATAATAATAGCCTAATTTTTTTTAAcat                                                                                                                                                                                                    >  1:674652/1‑250 (MQ=255)
                                                    tGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAcat                                                                                                                                                                                                    <  1:352507/249‑1 (MQ=255)
                                                        aGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATGAAAGAAAAATCAAACAAAAAAATAAAAAAAACCTAATTTTTTTTTACATCAtt                                                                                                                                                                                                >  1:528279/1‑249 (MQ=255)
                                                         gTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTa                                                                                                                                                                                               <  1:323181/249‑1 (MQ=255)
                                                          tCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACGGGAGAAGTAAAGGGCATATTTTACCCATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCACCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATATTGCGCCTGGGATTAATGGCGGGCGAATTTTGTTAAAAAAATAAATAGAAGTAATAACAACATAATTTACTAATTTTTTTGATaatcataatt                                                                                                                                                                                             >  1:495079/1‑246 (MQ=255)
                                                          tCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGAAAAAACAAAAAATAAAATAAATATTGCCTAATTTCTTTGTAcatacataa                                                                                                                                                                                              >  1:852405/1‑243 (MQ=255)
                                                              gATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGc                                                                                                                                                                                            <  1:561730/247‑1 (MQ=255)
                                                               aTCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGGAAGAAAAAAAAAAAAAGAAAAAAAATAATAAAGGGCTAATTTTTTTTAAAATAATTaaaaata                                                                                                                                                                                         >  1:555973/1‑244 (MQ=255)
                                                               aTCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATGAAAGAAAAAGAAAACAAAAAAATAATAATGGGCTAATTTTTTTTAAAATAATTAAAAatat                                                                                                                                                                                        >  1:248257/1‑250 (MQ=255)
                                                                       cAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGAATGAAAAAAAAAGCAAGCAAAAATATAATAAAAGGCTAATTTTTTTTTACATCAATAAAAAAatcattaatg                                                                                                                                                                                >  1:775250/1‑245 (MQ=255)
                                                                           tttAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATTAAAAAAAAAGAAAGCAATAATATAATAAATGACTTATTTTTTTTAACATCATTAAAAATATAAATATCGTCTa                                                                                                                                                                            >  1:678999/1‑250 (MQ=255)
                                                                                aTGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGc                                                                                                                                                                       <  2:221168/250‑1 (MQ=255)
                                                                                 tgtgATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATGAAAGAAAAAGCAAACAATAAAATAATAATAGCCTAATTTTTTTTTACATTATTAAACATATTATTATCGTCTAtttttc                                                                                                                                                                      >  1:245094/1‑247 (MQ=255)
                                                                                         gCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCg                                                                                                                                                              <  2:617129/250‑1 (MQ=255)
                                                                                               cATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGGATGAAAAAAAAAGGAAAAAAAAATAAAAAAAAAGCCTAATTTTTTTTTACAACAATAAACATATCATCCTCTTCTATTTTTCCGAATCCGTCGCCt                                                                                                                                                        >  1:857018/1‑250 (MQ=255)
                                                                                                    tACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATaa                                                                                                                                                   <  2:520876/250‑1 (MQ=255)
                                                                                                      cAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGGATGAAAAAAAAAACAAACAATAATATAAAAATGACCTTCTTTTTTTTTAAATCATTAAAAATATTAACATCGTCTTTTTTTCAGAATCCGGTGACTTCTAATc                                                                                                                                                 >  1:433839/1‑250 (MQ=255)
                                                                                                                  aGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCa                                                                                                                                     <  1:66701/250‑1 (MQ=255)
                                                                                                                   gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCat                                                                                                                                    <  1:104325/250‑1 (MQ=255)
                                                                                                                             tACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACg                                                                                                                           <  2:775349/249‑1 (MQ=255)
                                                                                                                               ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATTAAAAAAAAAGAAAAAAAAAATATAATAATGAGCTAATTTTTTTTTACATCATTAAACAAATCATCATCGTCTTTTTTTTCGAATACGTCGACTTATAATCACAAGAACGACATCTAAGCACgggg                                                                                                                        >  2:776478/1‑248 (MQ=255)
                                                                                                                                           cGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCtg                                                                                                            <  2:129446/250‑1 (MQ=255)
                                                                                                                                             aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGAAAAAGCAAGCAATAATATAATAATTGCCTAATTTCTTTTAACATTATTAAACATATAATCCTCGTCTATTTTTCCGAATCCGTCGACTTTTAATCTCCACACAGGGATATCAGATGGGTGCTGCGCACGAtgtg                                                                                                          >  1:589420/1‑250 (MQ=255)
                                                                                                                                             aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGCTGCTTTTTTGGTTTAAAAAAAATATAAGTAAATATATAAATAATTGCTAAATTTTTTTATAATCATTTAACAAATCAACATAGTTTTTTTTTCATAATCCTCCGTCTTATAATAATCAGAAACGCATATCAGGACGGTGATTGGCACGCtgtt                                                                                                          >  2:25339/1‑249 (MQ=255)
                                                                                                                                              cTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTgg                                                                                                        <  1:312233/250‑1 (MQ=255)
                                                                                                                                                 tCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGGATTAAAGAAAATGCAAGCAATAAAATAAAAATAGCCTAATTTTTTTTAAAATTATTAAACATATCATCATCCTCTTTTTTCCCGAATCCCTCGACTTATAATCGACAGAACGGCATATCACGACGGTGCTGCGAACGCTGTGGccc                                                                                                     >  1:694704/1‑250 (MQ=255)
                                                                                                                                                      tttATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGGATGAAAAAAAAAGCAAGCAAAAATATAATAAAGGCCTAATTTTTTTTTAAATCATTAAGCATATCATCATCGTCTATTTTCCAGAAACCGTCGGCTTATAATTTCCAGAAACGCATATCAGGACGGGGCTGCGGAAGCTGTGGCCCaaaa                                                                                                 >  1:898566/1‑249 (MQ=255)
                                                                                                                                                       ttATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAAc                                                                                                <  2:349963/249‑1 (MQ=255)
                                                                                                                                                          ttGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTc                                                                                            <  1:943744/250‑1 (MQ=255)
                                                                                                                                                              gAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATGAAAAAAAATGCAAGCAATAATATAATAATGGACTAATTTCTTTTAACATCATTAAGCATATCATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGGGCTGCGGACGCTGTGGCCCCAAACGCTCCAg                                                                                         >  2:370276/1‑249 (MQ=255)
                                                                                                                                                                       ttCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGTATGAAAAAAAAAGCAAGCAATAATATAATAAAATACTTAATTTTTTTTAAAACATTAAGCATAACATTAAAGTCTTTTTTTCATAATCCGTTCACTTATAATACACAGAAAAGCCAATCAAGCCGGGGCTTCGGACGCAGTGGTCCAAAACACTCCaagaatacttgg                                                                               >  2:634315/1‑239 (MQ=255)
                                                                                                                                                                               tataAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAAAAAAAACAAGAAAAAAAATAAAAATAGACTAATTTTTTTTTACATCAATAAACAAATCATAATAGTCTTTTTTTCATCATACGTCGCCCTATAATCTCCAGAAAGGCACATAAAGCAGGTGTTGCGCACGCTGTGGCCCACAACACTCCAGCAAAATGTGTAGGTGTTc                                                                       >  2:868452/1‑250 (MQ=255)
                                                                                                                                                                                 taAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAGAAAAAGCAAGCAATAATATAATAATAGGCTAAATTTTTTTTAAATCATTAAGAATATTATCATCGTCTATTTTTCAGAATTCGTCGACTTATAATTGCCAGAACGGGCTATTAAGACGGTGGTGCGGACGATGTGGGCCAACACATTTCAGTAAAATGTGTAGaatgttgt                                                                     >  1:938290/1‑243 (MQ=255)
                                                                                                                                                                                       ttATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATGAAAAAAAAAGCAAGCAATAATATAATAATTGCCTAATTTCTTTTAACATCATTAAGCATATCATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATTGCCAGAACGGCATATCAGGACGGGGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAAATGTGTAGATGTTTGTAGAttt                                                               >  1:660186/1‑250 (MQ=255)
                                                                                                                                                                                        tATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGAATGAAAAAAAAAGCAAACAATAATATAATAAATGCCTTATTTTTTTTTAAAACATTTAATATATTATTATTTTCTATTTTTCAGAATCCGTCGACTTTTAATTTCCCGCACGGCCTATTAAGACGGGGGTGCGAACGCTTTGGCCCCAAAAGTTTCAGTAAAATTTGTATATGTTTGTTGAtttt                                                              >  1:690845/1‑249 (MQ=255)
                                                                                                                                                                                         aTTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGAtt                                                                <  2:491125/247‑1 (MQ=255)
                                                                                                                                                                                          ttGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAAAAAAACCAAGCAAAAAAATAAAAATTGCCTCAATTTTTTTTAAATCATTTACCATATTAATCTCATCTATTTTTTCTAATCCGTCCACCTTTAATCTCCAAAACGGCATATCAAGACGGGGCGGCGCGAGCTGTTGCCCACAAAGATTCATTAAAATGTGTTTAGGTTGGTAGAtttttg                                                            >  2:403608/1‑247 (MQ=255)
                                                                                                                                                                                           tGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATGAAAGAAAAAGCAAGCAATAATATAATAATGGCCTAATTTTTTTTAACATCATTAAACATATCATCATCGTCTATTTTTCAGAATCCGTCGACTTATAATCTCCAGAAAGGCATATCAGGACGGGGCTGCGAAAGCTGTGGGCCAAAACGTTCCAGTAAACAGTGTAGATGTTCTTAGAttttc                                                             >  1:715449/1‑246 (MQ=255)
                                                                                                                                                                                            gTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCgc                                                           <  1:865244/249‑2 (MQ=255)
                                                                                                                                                                                              ttACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCATTTTGGGATATAAAAAAAAAGAAAGAATTAAATAAAAAATGTCCTAATTCTTTTAACATCATTTAATAATTCATTCTTTTCTCTTTTCCAAAAATCCTCGAATTATAAATTCCTACACGGCATATTTAGATAGGGCTGCGAAAGCCGTGTCCCCAAAAGGTTCCACAAAAAGTGTGGATGTTTTTAGGttttcccggc                                                        >  1:711996/1‑243 (MQ=255)
                                                                                                                                                                                                 ccTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATGAAAAAAAAAAAAAGAAAAAATATAAAAAAAGCCTAATTTTTTTTTAAATTATTAAAAATATTATTATCGTCTATTTTTTAGTATCCGTCGACTTATAATTTCCACAACGGCCTATAAAGGCGGGGCTGCGAACGCTTTGTCCCCCAACACTCTCGTAAAAATTGTGGATGTTTGTGTATTTTCGAGCCAt                                                      >  2:97372/1‑249 (MQ=255)
                                                                                                                                                                                                     aTCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAAAAAAAGCAAACAAAAAAATAATAATAGCATAATTTTTTTTTACATCAATAAACATATAATACTCTGCTTTTTTCCAGAATCCGTCCACTTATAATCCCCCGAAAGGCATATCAAGACGGGGCTGGGCACGCTTTGGCCCAAAACGTTTCAGGAAAATTTGTAGAGTTTCGTAGAATTTCCAGCCACaa                                                    >  1:752662/1‑247 (MQ=255)
                                                                                                                                                                                                       cATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTTTATGTAAAAAAAAACAAAAAAAAAAATAAAAATAGGCTAATTTTTTTTTAAATACTTAAACATATCATCATCCTTTTTTTTTCAGAAACCGTCGAATTATAATTTCCCCAACGGCCTATAAAGAGGGGGGTGGGGACGCCGTGGGCCAAAACGTTCCAGATAAAAGTTGAGATGTTCGTAGGTTTTCTCGCCATAATCGa                                                >  2:822308/1‑249 (MQ=255)
                                                                                                                                                                                                             ccTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGgc                                          <  1:370087/249‑1 (MQ=255)
                                                                                                                                                                                                                                gtaTTAATGGCGGGTGCTTTTAGGAATGAAAAAAAATGCAAGAAATAATATAATAAGGGCCTAATTTCTTTAAACATCATTAAGCATATCACCATCGTCTATTTGCCAGAACCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTCCCAGTAAACGGTGTAAATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCAt                      <  1:619728/248‑1 (MQ=255)
                                                                                                                                                                                                                                gaataatgggtgggTGCTTTAAGAAAGGAAAGAAAAAGCAAGCAATAATATAATAAGGGCCTATTTTCTTTGAACACCTTTAAGAATATCATCATCTTCTTTTTGCCAGAATGCGTCGACTTATAATCGCCAAAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAACCGTTCCAGAAAACGGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGc                        <  1:596784/237‑1 (MQ=255)
                                                                                                                                                                                                                                      aTGGCGGGTGCTTTTAGGAATGAAAGAAAATGAAAGAAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCt                <  1:80158/250‑1 (MQ=255)
                                                                                                                                                                                                                                           gggTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGACCGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCt           <  1:379840/250‑1 (MQ=255)
                                                                                                                                                                                                                                           gggTGCTTTAAGGAATAAAAGAAAATGCAAGAAAAAATATAATAAGGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCAAGAATCCGTCGACTTAAAATCGCCAGAACGGCATATCAGGCCGGTGCGGCGAACGCTGTGGCCCAAAACGTGCCAGTAAACTGTGTAGTTGTTCGTAAATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCt           <  2:433839/250‑1 (MQ=255)
                                                                                                                                                                                                                                               gCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGt         >  2:689154/1‑248 (MQ=255)
                                                                                                                                                                                                                                                cTTTTAGGAATGAAAGAAAAGGAAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGAATATCACCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCAAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTaa       <  1:614016/249‑1 (MQ=255)
                                                                                                                                                                                                                                                      aGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAAt  >  1:564111/1‑249 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                            
CGTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAAT  >  NZ_CP009273/4525769‑4526262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: