Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092734,526,0600CT34.8% 102.4 / 21.4 66intergenic (+212/+56)yjhR/BW25113_RS26295helicase YjhR/HNH endonuclease
Reads supporting (aligned to +/- strand):  ref base C (18/25);  new base T (23/0);  total (41/25)
Fisher's exact test for biased strand distribution p-value = 6.33e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGATTA  >  NZ_CP009273/4525811‑4526308
                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                         
aGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTc                                                                                                                                                                                                                                                           <  1:430546/250‑1 (MQ=255)
         atGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGGATTAAAGAAAAAACAAACAATAATATAATAATAGCCTAATTTTTTTTAAcat                                                                                                                                                                                                                                                  >  1:674652/1‑250 (MQ=255)
          tGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAcat                                                                                                                                                                                                                                                  <  1:352507/249‑1 (MQ=255)
              aGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATGAAAGAAAAATCAAACAAAAAAATAAAAAAAACCTAATTTTTTTTTACATCAtt                                                                                                                                                                                                                                              >  1:528279/1‑249 (MQ=255)
               gTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTa                                                                                                                                                                                                                                             <  1:323181/249‑1 (MQ=255)
                tCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACGGGAGAAGTAAAGGGCATATTTTACCCATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCACCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATATTGCGCCTGGGATTAATGGCGGGCGAATTTTGTTAAAAAAATAAATAGAAGTAATAACAACATAATTTACTAATTTTTTTGATaatcataatt                                                                                                                                                                                                                                           >  1:495079/1‑246 (MQ=255)
                tCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGAAAAAACAAAAAATAAAATAAATATTGCCTAATTTCTTTGTAcatacataa                                                                                                                                                                                                                                            >  1:852405/1‑243 (MQ=255)
                    gATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGc                                                                                                                                                                                                                                          <  1:561730/247‑1 (MQ=255)
                     aTCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGGAAGAAAAAAAAAAAAAGAAAAAAAATAATAAAGGGCTAATTTTTTTTAAAATAATTaaaaata                                                                                                                                                                                                                                       >  1:555973/1‑244 (MQ=255)
                     aTCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATGAAAGAAAAAGAAAACAAAAAAATAATAATGGGCTAATTTTTTTTAAAATAATTAAAAatat                                                                                                                                                                                                                                      >  1:248257/1‑250 (MQ=255)
                             cAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGAATGAAAAAAAAAGCAAGCAAAAATATAATAAAAGGCTAATTTTTTTTTACATCAATAAAAAAatcattaatg                                                                                                                                                                                                                              >  1:775250/1‑245 (MQ=255)
                                 tttAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATTAAAAAAAAAGAAAGCAATAATATAATAAATGACTTATTTTTTTTAACATCATTAAAAATATAAATATCGTCTa                                                                                                                                                                                                                          >  1:678999/1‑250 (MQ=255)
                                      aTGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGc                                                                                                                                                                                                                     <  2:221168/250‑1 (MQ=255)
                                       tgtgATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATGAAAGAAAAAGCAAACAATAAAATAATAATAGCCTAATTTTTTTTTACATTATTAAACATATTATTATCGTCTAtttttc                                                                                                                                                                                                                    >  1:245094/1‑247 (MQ=255)
                                               gCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCg                                                                                                                                                                                                            <  2:617129/250‑1 (MQ=255)
                                                     cATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGGATGAAAAAAAAAGGAAAAAAAAATAAAAAAAAAGCCTAATTTTTTTTTACAACAATAAACATATCATCCTCTTCTATTTTTCCGAATCCGTCGCCt                                                                                                                                                                                                      >  1:857018/1‑250 (MQ=255)
                                                          tACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATaa                                                                                                                                                                                                 <  2:520876/250‑1 (MQ=255)
                                                            cAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGGATGAAAAAAAAAACAAACAATAATATAAAAATGACCTTCTTTTTTTTTAAATCATTAAAAATATTAACATCGTCTTTTTTTCAGAATCCGGTGACTTCTAATc                                                                                                                                                                                               >  1:433839/1‑250 (MQ=255)
                                                                        aGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCa                                                                                                                                                                                   <  1:66701/250‑1 (MQ=255)
                                                                         gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCat                                                                                                                                                                                  <  1:104325/250‑1 (MQ=255)
                                                                                   tACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACg                                                                                                                                                                         <  2:775349/249‑1 (MQ=255)
                                                                                     ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATTAAAAAAAAAGAAAAAAAAAATATAATAATGAGCTAATTTTTTTTTACATCATTAAACAAATCATCATCGTCTTTTTTTTCGAATACGTCGACTTATAATCACAAGAACGACATCTAAGCACgggg                                                                                                                                                                      >  2:776478/1‑248 (MQ=255)
                                                                                                 cGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCtg                                                                                                                                                          <  2:129446/250‑1 (MQ=255)
                                                                                                   aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGAAAAAGCAAGCAATAATATAATAATTGCCTAATTTCTTTTAACATTATTAAACATATAATCCTCGTCTATTTTTCCGAATCCGTCGACTTTTAATCTCCACACAGGGATATCAGATGGGTGCTGCGCACGAtgtg                                                                                                                                                        >  1:589420/1‑250 (MQ=255)
                                                                                                   aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGCTGCTTTTTTGGTTTAAAAAAAATATAAGTAAATATATAAATAATTGCTAAATTTTTTTATAATCATTTAACAAATCAACATAGTTTTTTTTTCATAATCCTCCGTCTTATAATAATCAGAAACGCATATCAGGACGGTGATTGGCACGCtgtt                                                                                                                                                        >  2:25339/1‑249 (MQ=255)
                                                                                                    cTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTgg                                                                                                                                                      <  1:312233/250‑1 (MQ=255)
                                                                                                       tCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGGATTAAAGAAAATGCAAGCAATAAAATAAAAATAGCCTAATTTTTTTTAAAATTATTAAACATATCATCATCCTCTTTTTTCCCGAATCCCTCGACTTATAATCGACAGAACGGCATATCACGACGGTGCTGCGAACGCTGTGGccc                                                                                                                                                   >  1:694704/1‑250 (MQ=255)
                                                                                                            tttATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGGATGAAAAAAAAAGCAAGCAAAAATATAATAAAGGCCTAATTTTTTTTTAAATCATTAAGCATATCATCATCGTCTATTTTCCAGAAACCGTCGGCTTATAATTTCCAGAAACGCATATCAGGACGGGGCTGCGGAAGCTGTGGCCCaaaa                                                                                                                                               >  1:898566/1‑249 (MQ=255)
                                                                                                             ttATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAAc                                                                                                                                              <  2:349963/249‑1 (MQ=255)
                                                                                                                ttGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTc                                                                                                                                          <  1:943744/250‑1 (MQ=255)
                                                                                                                    gAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATGAAAAAAAATGCAAGCAATAATATAATAATGGACTAATTTCTTTTAACATCATTAAGCATATCATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGGGCTGCGGACGCTGTGGCCCCAAACGCTCCAg                                                                                                                                       >  2:370276/1‑249 (MQ=255)
                                                                                                                             ttCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGTATGAAAAAAAAAGCAAGCAATAATATAATAAAATACTTAATTTTTTTTAAAACATTAAGCATAACATTAAAGTCTTTTTTTCATAATCCGTTCACTTATAATACACAGAAAAGCCAATCAAGCCGGGGCTTCGGACGCAGTGGTCCAAAACACTCCaagaatacttgg                                                                                                                             >  2:634315/1‑239 (MQ=255)
                                                                                                                                     tataAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAAAAAAAACAAGAAAAAAAATAAAAATAGACTAATTTTTTTTTACATCAATAAACAAATCATAATAGTCTTTTTTTCATCATACGTCGCCCTATAATCTCCAGAAAGGCACATAAAGCAGGTGTTGCGCACGCTGTGGCCCACAACACTCCAGCAAAATGTGTAGGTGTTc                                                                                                                     >  2:868452/1‑250 (MQ=255)
                                                                                                                                       taAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAGAAAAAGCAAGCAATAATATAATAATAGGCTAAATTTTTTTTAAATCATTAAGAATATTATCATCGTCTATTTTTCAGAATTCGTCGACTTATAATTGCCAGAACGGGCTATTAAGACGGTGGTGCGGACGATGTGGGCCAACACATTTCAGTAAAATGTGTAGaatgttgt                                                                                                                   >  1:938290/1‑243 (MQ=255)
                                                                                                                                             ttATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATGAAAAAAAAAGCAAGCAATAATATAATAATTGCCTAATTTCTTTTAACATCATTAAGCATATCATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATTGCCAGAACGGCATATCAGGACGGGGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAAATGTGTAGATGTTTGTAGAttt                                                                                                             >  1:660186/1‑250 (MQ=255)
                                                                                                                                              tATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGAATGAAAAAAAAAGCAAACAATAATATAATAAATGCCTTATTTTTTTTTAAAACATTTAATATATTATTATTTTCTATTTTTCAGAATCCGTCGACTTTTAATTTCCCGCACGGCCTATTAAGACGGGGGTGCGAACGCTTTGGCCCCAAAAGTTTCAGTAAAATTTGTATATGTTTGTTGAtttt                                                                                                            >  1:690845/1‑249 (MQ=255)
                                                                                                                                               aTTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGAtt                                                                                                              <  2:491125/247‑1 (MQ=255)
                                                                                                                                                ttGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAAAAAAACCAAGCAAAAAAATAAAAATTGCCTCAATTTTTTTTAAATCATTTACCATATTAATCTCATCTATTTTTTCTAATCCGTCCACCTTTAATCTCCAAAACGGCATATCAAGACGGGGCGGCGCGAGCTGTTGCCCACAAAGATTCATTAAAATGTGTTTAGGTTGGTAGAtttttg                                                                                                          >  2:403608/1‑247 (MQ=255)
                                                                                                                                                 tGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATGAAAGAAAAAGCAAGCAATAATATAATAATGGCCTAATTTTTTTTAACATCATTAAACATATCATCATCGTCTATTTTTCAGAATCCGTCGACTTATAATCTCCAGAAAGGCATATCAGGACGGGGCTGCGAAAGCTGTGGGCCAAAACGTTCCAGTAAACAGTGTAGATGTTCTTAGAttttc                                                                                                           >  1:715449/1‑246 (MQ=255)
                                                                                                                                                  gTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCgc                                                                                                         <  1:865244/249‑2 (MQ=255)
                                                                                                                                                    ttACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCATTTTGGGATATAAAAAAAAAGAAAGAATTAAATAAAAAATGTCCTAATTCTTTTAACATCATTTAATAATTCATTCTTTTCTCTTTTCCAAAAATCCTCGAATTATAAATTCCTACACGGCATATTTAGATAGGGCTGCGAAAGCCGTGTCCCCAAAAGGTTCCACAAAAAGTGTGGATGTTTTTAGGttttcccggc                                                                                                      >  1:711996/1‑243 (MQ=255)
                                                                                                                                                       ccTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATGAAAAAAAAAAAAAGAAAAAATATAAAAAAAGCCTAATTTTTTTTTAAATTATTAAAAATATTATTATCGTCTATTTTTTAGTATCCGTCGACTTATAATTTCCACAACGGCCTATAAAGGCGGGGCTGCGAACGCTTTGTCCCCCAACACTCTCGTAAAAATTGTGGATGTTTGTGTATTTTCGAGCCAt                                                                                                    >  2:97372/1‑249 (MQ=255)
                                                                                                                                                           aTCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAAAAAAAGCAAACAAAAAAATAATAATAGCATAATTTTTTTTTACATCAATAAACATATAATACTCTGCTTTTTTCCAGAATCCGTCCACTTATAATCCCCCGAAAGGCATATCAAGACGGGGCTGGGCACGCTTTGGCCCAAAACGTTTCAGGAAAATTTGTAGAGTTTCGTAGAATTTCCAGCCACaa                                                                                                  >  1:752662/1‑247 (MQ=255)
                                                                                                                                                             cATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTTTATGTAAAAAAAAACAAAAAAAAAAATAAAAATAGGCTAATTTTTTTTTAAATACTTAAACATATCATCATCCTTTTTTTTTCAGAAACCGTCGAATTATAATTTCCCCAACGGCCTATAAAGAGGGGGGTGGGGACGCCGTGGGCCAAAACGTTCCAGATAAAAGTTGAGATGTTCGTAGGTTTTCTCGCCATAATCGa                                                                                              >  2:822308/1‑249 (MQ=255)
                                                                                                                                                                   ccTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGgc                                                                                        <  1:370087/249‑1 (MQ=255)
                                                                                                                                                                                      gtaTTAATGGCGGGTGCTTTTAGGAATGAAAAAAAATGCAAGAAATAATATAATAAGGGCCTAATTTCTTTAAACATCATTAAGCATATCACCATCGTCTATTTGCCAGAACCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTCCCAGTAAACGGTGTAAATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCAt                                                                    <  1:619728/248‑1 (MQ=255)
                                                                                                                                                                                      gaataatgggtgggTGCTTTAAGAAAGGAAAGAAAAAGCAAGCAATAATATAATAAGGGCCTATTTTCTTTGAACACCTTTAAGAATATCATCATCTTCTTTTTGCCAGAATGCGTCGACTTATAATCGCCAAAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAACCGTTCCAGAAAACGGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGc                                                                      <  1:596784/237‑1 (MQ=255)
                                                                                                                                                                                            aTGGCGGGTGCTTTTAGGAATGAAAGAAAATGAAAGAAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCt                                                              <  1:80158/250‑1 (MQ=255)
                                                                                                                                                                                                 gggTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGACCGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCt                                                         <  1:379840/250‑1 (MQ=255)
                                                                                                                                                                                                 gggTGCTTTAAGGAATAAAAGAAAATGCAAGAAAAAATATAATAAGGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCAAGAATCCGTCGACTTAAAATCGCCAGAACGGCATATCAGGCCGGTGCGGCGAACGCTGTGGCCCAAAACGTGCCAGTAAACTGTGTAGTTGTTCGTAAATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCt                                                         <  2:433839/250‑1 (MQ=255)
                                                                                                                                                                                                     gCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGt                                                       >  2:689154/1‑248 (MQ=255)
                                                                                                                                                                                                      cTTTTAGGAATGAAAGAAAAGGAAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGAATATCACCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCAAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTaa                                                     <  1:614016/249‑1 (MQ=255)
                                                                                                                                                                                                          taagaaaTAAAAAAAAATGCAAGAAATAATATAATAATGCCCTAATTTCTTTGAACATCATTAACCATTCCATCATCGTTTATTTGCCAGAACCCGTCGATTTAAAACCGCAAAACCGGCATATCAGGACGGTGCTGCGACCGCTGTGGCCCAAACCGTTCCAGTAACCTGTGTAGTTGTTCGTAGTTTCCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCa                                                  <  2:232952/244‑1 (MQ=255)
                                                                                                                                                                                                            aGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAAt                                                >  1:564111/1‑249 (MQ=255)
                                                                                                                                                                                                               aaTGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATaac                                             >  2:58850/1‑249 (MQ=255)
                                                                                                                                                                                                                   aaagaaaATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAGGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACgg                                        >  2:687973/1‑250 (MQ=255)
                                                                                                                                                                                                                      gaaaATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGtt                                      >  2:843930/1‑249 (MQ=255)
                                                                                                                                                                                                                      gaaaATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGtt                                      >  1:712400/1‑249 (MQ=255)
                                                                                                                                                                                                                            gcaagcaaTAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCgg                               >  1:869836/1‑250 (MQ=255)
                                                                                                                                                                                                                              aaccaaTAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTg                             >  2:192838/4‑250 (MQ=255)
                                                                                                                                                                                                                                   ataatataatAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGt                        >  2:858254/1‑250 (MQ=255)
                                                                                                                                                                                                                                    taatataataATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGCGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGtt                       >  1:164405/1‑250 (MQ=255)
                                                                                                                                                                                                                                      atataataATGGCCTAATTTCTTTGAACTTCATTAAGCATATCATCATCGTCTATTTGCCAGAACCCGTCCACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGtttt                     <  1:505958/250‑1 (MQ=255)
                                                                                                                                                                                                                                            ataatGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCAcc                >  2:942742/1‑250 (MQ=255)
                                                                                                                                                                                                                                                  gtccTAATTTCTTTGAACATCATAAAGCATATCATCATCGTCTATTTGCCAGAACCCGTCGCTTTATAACCCCCAAAACGGAATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTtgt           <  2:555973/248‑1 (MQ=255)
                                                                                                                                                                                                                                                    ccTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGc         >  1:765136/1‑250 (MQ=255)
                                                                                                                                                                                                                                                      tAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCTCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGc         >  1:501451/1‑248 (MQ=255)
                                                                                                                                                                                                                                                             cTTTGAACATCATTAAGCATATCATCATCGTTTATTTCCCAGAACCCGTCGACTTATAATCCCCAGAACGGCATAGCAGGACGGTGCTGCGAACGCTGTGGCCAAAAACTTCCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGatta  <  2:704921/249‑1 (MQ=255)
                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                         
AGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGATTA  >  NZ_CP009273/4525811‑4526308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: