Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092734,526,0640GT37.1% 107.7 / 34.0 71intergenic (+216/+52)yjhR/BW25113_RS26295helicase YjhR/HNH endonuclease
Reads supporting (aligned to +/- strand):  ref base G (17/27);  new base T (26/0);  total (43/28)
Fisher's exact test for biased strand distribution p-value = 6.41e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

ATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGATTAT  >  NZ_CP009273/4525820‑4526309
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                      
atGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGGATTAAAGAAAAAACAAACAATAATATAATAATAGCCTAATTTTTTTTAAcat                                                                                                                                                                                                                                                   >  1:674652/1‑250 (MQ=255)
 tGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAcat                                                                                                                                                                                                                                                   <  1:352507/249‑1 (MQ=255)
     aGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATGAAAGAAAAATCAAACAAAAAAATAAAAAAAACCTAATTTTTTTTTACATCAtt                                                                                                                                                                                                                                               >  1:528279/1‑249 (MQ=255)
      gTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTa                                                                                                                                                                                                                                              <  1:323181/249‑1 (MQ=255)
       tCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACGGGAGAAGTAAAGGGCATATTTTACCCATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCACCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATATTGCGCCTGGGATTAATGGCGGGCGAATTTTGTTAAAAAAATAAATAGAAGTAATAACAACATAATTTACTAATTTTTTTGATaatcataatt                                                                                                                                                                                                                                            >  1:495079/1‑246 (MQ=255)
       tCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGAAAAAACAAAAAATAAAATAAATATTGCCTAATTTCTTTGTAcatacataa                                                                                                                                                                                                                                             >  1:852405/1‑243 (MQ=255)
           gATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGc                                                                                                                                                                                                                                           <  1:561730/247‑1 (MQ=255)
            aTCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGGAAGAAAAAAAAAAAAAGAAAAAAAATAATAAAGGGCTAATTTTTTTTAAAATAATTaaaaata                                                                                                                                                                                                                                        >  1:555973/1‑244 (MQ=255)
            aTCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATGAAAGAAAAAGAAAACAAAAAAATAATAATGGGCTAATTTTTTTTAAAATAATTAAAAatat                                                                                                                                                                                                                                       >  1:248257/1‑250 (MQ=255)
                    cAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGAATGAAAAAAAAAGCAAGCAAAAATATAATAAAAGGCTAATTTTTTTTTACATCAATAAAAAAatcattaatg                                                                                                                                                                                                                               >  1:775250/1‑245 (MQ=255)
                        tttAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATTAAAAAAAAAGAAAGCAATAATATAATAAATGACTTATTTTTTTTAACATCATTAAAAATATAAATATCGTCTa                                                                                                                                                                                                                           >  1:678999/1‑250 (MQ=255)
                             aTGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGc                                                                                                                                                                                                                      <  2:221168/250‑1 (MQ=255)
                              tgtgATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATGAAAGAAAAAGCAAACAATAAAATAATAATAGCCTAATTTTTTTTTACATTATTAAACATATTATTATCGTCTAtttttc                                                                                                                                                                                                                     >  1:245094/1‑247 (MQ=255)
                                      gCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCg                                                                                                                                                                                                             <  2:617129/250‑1 (MQ=255)
                                            cATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGGATGAAAAAAAAAGGAAAAAAAAATAAAAAAAAAGCCTAATTTTTTTTTACAACAATAAACATATCATCCTCTTCTATTTTTCCGAATCCGTCGCCt                                                                                                                                                                                                       >  1:857018/1‑250 (MQ=255)
                                                 tACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATaa                                                                                                                                                                                                  <  2:520876/250‑1 (MQ=255)
                                                   cAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGGATGAAAAAAAAAACAAACAATAATATAAAAATGACCTTCTTTTTTTTTAAATCATTAAAAATATTAACATCGTCTTTTTTTCAGAATCCGGTGACTTCTAATc                                                                                                                                                                                                >  1:433839/1‑250 (MQ=255)
                                                               aGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCa                                                                                                                                                                                    <  1:66701/250‑1 (MQ=255)
                                                                gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCat                                                                                                                                                                                   <  1:104325/250‑1 (MQ=255)
                                                                          tACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACg                                                                                                                                                                          <  2:775349/249‑1 (MQ=255)
                                                                            ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATTAAAAAAAAAGAAAAAAAAAATATAATAATGAGCTAATTTTTTTTTACATCATTAAACAAATCATCATCGTCTTTTTTTTCGAATACGTCGACTTATAATCACAAGAACGACATCTAAGCACgggg                                                                                                                                                                       >  2:776478/1‑248 (MQ=255)
                                                                                        cGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCtg                                                                                                                                                           <  2:129446/250‑1 (MQ=255)
                                                                                          aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGAAAAAGCAAGCAATAATATAATAATTGCCTAATTTCTTTTAACATTATTAAACATATAATCCTCGTCTATTTTTCCGAATCCGTCGACTTTTAATCTCCACACAGGGATATCAGATGGGTGCTGCGCACGAtgtg                                                                                                                                                         >  1:589420/1‑250 (MQ=255)
                                                                                          aCTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGCTGCTTTTTTGGTTTAAAAAAAATATAAGTAAATATATAAATAATTGCTAAATTTTTTTATAATCATTTAACAAATCAACATAGTTTTTTTTTCATAATCCTCCGTCTTATAATAATCAGAAACGCATATCAGGACGGTGATTGGCACGCtgtt                                                                                                                                                         >  2:25339/1‑249 (MQ=255)
                                                                                           cTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTgg                                                                                                                                                       <  1:312233/250‑1 (MQ=255)
                                                                                              tCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGGATTAAAGAAAATGCAAGCAATAAAATAAAAATAGCCTAATTTTTTTTAAAATTATTAAACATATCATCATCCTCTTTTTTCCCGAATCCCTCGACTTATAATCGACAGAACGGCATATCACGACGGTGCTGCGAACGCTGTGGccc                                                                                                                                                    >  1:694704/1‑250 (MQ=255)
                                                                                                   tttATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGGATGAAAAAAAAAGCAAGCAAAAATATAATAAAGGCCTAATTTTTTTTTAAATCATTAAGCATATCATCATCGTCTATTTTCCAGAAACCGTCGGCTTATAATTTCCAGAAACGCATATCAGGACGGGGCTGCGGAAGCTGTGGCCCaaaa                                                                                                                                                >  1:898566/1‑249 (MQ=255)
                                                                                                    ttATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAAc                                                                                                                                               <  2:349963/249‑1 (MQ=255)
                                                                                                       ttGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTc                                                                                                                                           <  1:943744/250‑1 (MQ=255)
                                                                                                           gAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATGAAAAAAAATGCAAGCAATAATATAATAATGGACTAATTTCTTTTAACATCATTAAGCATATCATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGGGCTGCGGACGCTGTGGCCCCAAACGCTCCAg                                                                                                                                        >  2:370276/1‑249 (MQ=255)
                                                                                                                    ttCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGTATGAAAAAAAAAGCAAGCAATAATATAATAAAATACTTAATTTTTTTTAAAACATTAAGCATAACATTAAAGTCTTTTTTTCATAATCCGTTCACTTATAATACACAGAAAAGCCAATCAAGCCGGGGCTTCGGACGCAGTGGTCCAAAACACTCCaagaatacttgg                                                                                                                              >  2:634315/1‑239 (MQ=255)
                                                                                                                            tataAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAAAAAAAACAAGAAAAAAAATAAAAATAGACTAATTTTTTTTTACATCAATAAACAAATCATAATAGTCTTTTTTTCATCATACGTCGCCCTATAATCTCCAGAAAGGCACATAAAGCAGGTGTTGCGCACGCTGTGGCCCACAACACTCCAGCAAAATGTGTAGGTGTTc                                                                                                                      >  2:868452/1‑250 (MQ=255)
                                                                                                                              taAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAGAAAAAGCAAGCAATAATATAATAATAGGCTAAATTTTTTTTAAATCATTAAGAATATTATCATCGTCTATTTTTCAGAATTCGTCGACTTATAATTGCCAGAACGGGCTATTAAGACGGTGGTGCGGACGATGTGGGCCAACACATTTCAGTAAAATGTGTAGaatgttgt                                                                                                                    >  1:938290/1‑243 (MQ=255)
                                                                                                                                    ttATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATGAAAAAAAAAGCAAGCAATAATATAATAATTGCCTAATTTCTTTTAACATCATTAAGCATATCATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATTGCCAGAACGGCATATCAGGACGGGGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAAATGTGTAGATGTTTGTAGAttt                                                                                                              >  1:660186/1‑250 (MQ=255)
                                                                                                                                     tATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGAATGAAAAAAAAAGCAAACAATAATATAATAAATGCCTTATTTTTTTTTAAAACATTTAATATATTATTATTTTCTATTTTTCAGAATCCGTCGACTTTTAATTTCCCGCACGGCCTATTAAGACGGGGGTGCGAACGCTTTGGCCCCAAAAGTTTCAGTAAAATTTGTATATGTTTGTTGAtttt                                                                                                             >  1:690845/1‑249 (MQ=255)
                                                                                                                                      aTTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGAtt                                                                                                               <  2:491125/247‑1 (MQ=255)
                                                                                                                                       ttGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAAAAAAACCAAGCAAAAAAATAAAAATTGCCTCAATTTTTTTTAAATCATTTACCATATTAATCTCATCTATTTTTTCTAATCCGTCCACCTTTAATCTCCAAAACGGCATATCAAGACGGGGCGGCGCGAGCTGTTGCCCACAAAGATTCATTAAAATGTGTTTAGGTTGGTAGAtttttg                                                                                                           >  2:403608/1‑247 (MQ=255)
                                                                                                                                        tGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATGAAAGAAAAAGCAAGCAATAATATAATAATGGCCTAATTTTTTTTAACATCATTAAACATATCATCATCGTCTATTTTTCAGAATCCGTCGACTTATAATCTCCAGAAAGGCATATCAGGACGGGGCTGCGAAAGCTGTGGGCCAAAACGTTCCAGTAAACAGTGTAGATGTTCTTAGAttttc                                                                                                            >  1:715449/1‑246 (MQ=255)
                                                                                                                                         gTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCgc                                                                                                          <  1:865244/249‑2 (MQ=255)
                                                                                                                                           ttACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCATTTTGGGATATAAAAAAAAAGAAAGAATTAAATAAAAAATGTCCTAATTCTTTTAACATCATTTAATAATTCATTCTTTTCTCTTTTCCAAAAATCCTCGAATTATAAATTCCTACACGGCATATTTAGATAGGGCTGCGAAAGCCGTGTCCCCAAAAGGTTCCACAAAAAGTGTGGATGTTTTTAGGttttcccggc                                                                                                       >  1:711996/1‑243 (MQ=255)
                                                                                                                                              ccTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATGAAAAAAAAAAAAAGAAAAAATATAAAAAAAGCCTAATTTTTTTTTAAATTATTAAAAATATTATTATCGTCTATTTTTTAGTATCCGTCGACTTATAATTTCCACAACGGCCTATAAAGGCGGGGCTGCGAACGCTTTGTCCCCCAACACTCTCGTAAAAATTGTGGATGTTTGTGTATTTTCGAGCCAt                                                                                                     >  2:97372/1‑249 (MQ=255)
                                                                                                                                                  aTCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAAAAAAAGCAAACAAAAAAATAATAATAGCATAATTTTTTTTTACATCAATAAACATATAATACTCTGCTTTTTTCCAGAATCCGTCCACTTATAATCCCCCGAAAGGCATATCAAGACGGGGCTGGGCACGCTTTGGCCCAAAACGTTTCAGGAAAATTTGTAGAGTTTCGTAGAATTTCCAGCCACaa                                                                                                   >  1:752662/1‑247 (MQ=255)
                                                                                                                                                    cATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTTTATGTAAAAAAAAACAAAAAAAAAAATAAAAATAGGCTAATTTTTTTTTAAATACTTAAACATATCATCATCCTTTTTTTTTCAGAAACCGTCGAATTATAATTTCCCCAACGGCCTATAAAGAGGGGGGTGGGGACGCCGTGGGCCAAAACGTTCCAGATAAAAGTTGAGATGTTCGTAGGTTTTCTCGCCATAATCGa                                                                                               >  2:822308/1‑249 (MQ=255)
                                                                                                                                                          ccTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGgc                                                                                         <  1:370087/249‑1 (MQ=255)
                                                                                                                                                                             gtaTTAATGGCGGGTGCTTTTAGGAATGAAAAAAAATGCAAGAAATAATATAATAAGGGCCTAATTTCTTTAAACATCATTAAGCATATCACCATCGTCTATTTGCCAGAACCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTCCCAGTAAACGGTGTAAATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCAt                                                                     <  1:619728/248‑1 (MQ=255)
                                                                                                                                                                             gaataatgggtgggTGCTTTAAGAAAGGAAAGAAAAAGCAAGCAATAATATAATAAGGGCCTATTTTCTTTGAACACCTTTAAGAATATCATCATCTTCTTTTTGCCAGAATGCGTCGACTTATAATCGCCAAAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAACCGTTCCAGAAAACGGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGc                                                                       <  1:596784/237‑1 (MQ=255)
                                                                                                                                                                                   aTGGCGGGTGCTTTTAGGAATGAAAGAAAATGAAAGAAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCt                                                               <  1:80158/250‑1 (MQ=255)
                                                                                                                                                                                        gggTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGACCGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCt                                                          <  1:379840/250‑1 (MQ=255)
                                                                                                                                                                                        gggTGCTTTAAGGAATAAAAGAAAATGCAAGAAAAAATATAATAAGGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCAAGAATCCGTCGACTTAAAATCGCCAGAACGGCATATCAGGCCGGTGCGGCGAACGCTGTGGCCCAAAACGTGCCAGTAAACTGTGTAGTTGTTCGTAAATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCt                                                          <  2:433839/250‑1 (MQ=255)
                                                                                                                                                                                            gCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGt                                                        >  2:689154/1‑248 (MQ=255)
                                                                                                                                                                                             cTTTTAGGAATGAAAGAAAAGGAAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGAATATCACCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCAAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTaa                                                      <  1:614016/249‑1 (MQ=255)
                                                                                                                                                                                                 taagaaaTAAAAAAAAATGCAAGAAATAATATAATAATGCCCTAATTTCTTTGAACATCATTAACCATTCCATCATCGTTTATTTGCCAGAACCCGTCGATTTAAAACCGCAAAACCGGCATATCAGGACGGTGCTGCGACCGCTGTGGCCCAAACCGTTCCAGTAACCTGTGTAGTTGTTCGTAGTTTCCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCa                                                   <  2:232952/244‑1 (MQ=255)
                                                                                                                                                                                                   aGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAAt                                                 >  1:564111/1‑249 (MQ=255)
                                                                                                                                                                                                      aaTGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATaac                                              >  2:58850/1‑249 (MQ=255)
                                                                                                                                                                                                          aaagaaaATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAGGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACgg                                         >  2:687973/1‑250 (MQ=255)
                                                                                                                                                                                                             gaaaATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGtt                                       >  2:843930/1‑249 (MQ=255)
                                                                                                                                                                                                             gaaaATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGtt                                       >  1:712400/1‑249 (MQ=255)
                                                                                                                                                                                                                   gcaagcaaTAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCgg                                >  1:869836/1‑250 (MQ=255)
                                                                                                                                                                                                                     aaccaaTAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTg                              >  2:192838/4‑250 (MQ=255)
                                                                                                                                                                                                                          ataatataatAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGt                         >  2:858254/1‑250 (MQ=255)
                                                                                                                                                                                                                           taatataataATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGCGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGtt                        >  1:164405/1‑250 (MQ=255)
                                                                                                                                                                                                                             atataataATGGCCTAATTTCTTTGAACTTCATTAAGCATATCATCATCGTCTATTTGCCAGAACCCGTCCACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGtttt                      <  1:505958/250‑1 (MQ=255)
                                                                                                                                                                                                                                   ataatGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCAcc                 >  2:942742/1‑250 (MQ=255)
                                                                                                                                                                                                                                         gtccTAATTTCTTTGAACATCATAAAGCATATCATCATCGTCTATTTGCCAGAACCCGTCGCTTTATAACCCCCAAAACGGAATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTtgt            <  2:555973/248‑1 (MQ=255)
                                                                                                                                                                                                                                           ccTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGc          >  1:765136/1‑250 (MQ=255)
                                                                                                                                                                                                                                             tAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCTCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGc          >  1:501451/1‑248 (MQ=255)
                                                                                                                                                                                                                                                    cTTTGAACATCATTAAGCATATCATCATCGTTTATTTCCCAGAACCCGTCGACTTATAATCCCCAGAACGGCATAGCAGGACGGTGCTGCGAACGCTGTGGCCAAAAACTTCCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGatta   <  2:704921/249‑1 (MQ=255)
                                                                                                                                                                                                                                                     tttGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGattat  >  2:389764/1‑249 (MQ=255)
                                                                                                                                                                                                                                                     tttGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGattat  >  2:171067/1‑249 (MQ=255)
                                                                                                                                                                                                                                                       tGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGattat  <  1:717048/247‑1 (MQ=255)
                                                                                                                                                                                                                                                       tGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAAACGTTCCAGTAAACGGTGTAGATGTTCTTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGattat  <  2:239166/247‑1 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                      
ATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGATTAT  >  NZ_CP009273/4525820‑4526309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: