| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 762,172 | 0 | G | T | 35.9% | 78.0 / 17.6 | 53 | A225S (GCG→TCG) | mngA | PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC |
| Reads supporting (aligned to +/- strand): ref base G (21/13); new base T (19/0); total (40/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.81e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAA‑CCTTCTGCCTCTTTTT‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGT > NZ_CP009273/761923‑762419 | gatgaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAA‑CCTTCTGCCTCTTTTT‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAAACGCCTGTATTTTTg > 1:120637/1‑250 (MQ=255) gcGGCGCGGGATGAC‑AGGGGGGCACCCAACCCTTCTCCCTTTTTCC‑CCAACCCC‑CCACCTATGGTCGGCGTACCGGCCGGTGGGGGGG‑G‑TTTTGCTCACCCCTAGAGGGGGGGAAAATATGAAAAAAAAGCCGAACAAAAACGGGGAGAAATTTTTTACGTAAAAAAAAAA‑GGCGCAAACGGCATG‑GAGGGGTTTTAAAGGGGGG‑ATC‑AACAA‑AATGGTAAAACCGCCTGTATTTTTGCGGCTGAAGTCg < 2:743882/249‑1 (MQ=255) tgggaggaaaGGGGGGCCCGCCA‑CCTTCTCCCTTTTTTTCCCAACCCC‑CCACCTTGCGCCGGCG‑AACGGGCTTGCCGGGGGTG‑TATTCCCCCCCCATATAGGGCTGAGAAATATCGGAAAAAACCGGGACACAACCGCGGCGTAAATGTTTGCGTAAAAAAACAG‑GGCGCTAACGG‑ATT‑GAAGGGGTTTTTACGGGGGAATC‑AACAA‑AATAGGGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCa < 2:543048/242‑1 (MQ=255) aCGCAA‑CCTTCTGCCTCTTTTT‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAATGGCACCGCCTGGTTTTTTTTGGGTGGAGTCG‑CCCTCCAGGGGAGTGAGGGtttt > 1:610742/1‑249 (MQ=255) gCAA‑CCTTCTGCCTCTTTTT‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTTCGGCTGAAATCG‑CCATCAAAGAGAGGGAGCGGTTTAAt > 1:885036/1‑250 (MQ=255) tGCCTCTTTTT‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑CATAGTGCAACCGCCTGTATTTTTTCCGCCGGAAGCG‑CCCTCAAGGGGAGGGGGGGGTTTTAT‑GGGCTTccc > 1:124374/1‑250 (MQ=255) tGCCTCTTTTT‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACCC‑AAAAGTGCAACCCCCTGTATTTTTTCGGGTGAAGTCG‑CCATCCAGGGGGGTGAGGGGTTTTAT‑TGGATTccc > 1:411785/1‑250 (MQ=255) ggcctttttt‑CCCACCCGCCCACCTCTCGTTGGCGTAGCGGCGTGTCGGGGGG‑G‑TGTTACTCACACCTAGAGGGCGGAGAAATATGGGGAAAAAGCCGGACGCAAGCGGGGCGTAAGTTTTTCCGTAAAAAAACAA‑GGCGCGAACGGAATG‑GAGGGGCTTTTAGGGGGGA‑ATC‑AACAA‑AAAAGTGCAGCCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTccc < 2:108270/245‑1 (MQ=255) tttt‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑AAC‑AAATC‑AATAGTGCAAACGCCTGGATTTTTGCGGCTGAAGTCG‑CCCTCAAGGAGGGGGGGCGGTTTTAT‑GGCATTTCCGCGCctt > 1:457184/1‑250 (MQ=255) ttt‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTTCGGCTGAAGGCG‑CCATCAAGGAGAGGGGGCGTTTTAAT‑GGCATTCCCGCGCttt > 1:827088/1‑249 (MQ=255) tt‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑AAC‑AACTC‑CATAGTGCCAACCCCTGTATTTTTTCGGCTGGAGTCG‑CCATCAAGGGGAGGGAGCGTTTTTAT‑GGGCTTTCCGCGCttttc > 1:435730/1‑248 (MQ=255) gcg‑cCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑GAC‑AAAACAAAAAATGCAACC‑CCTGGTTTTTTTCGGCGGGAGGCGCCCACAAAGGGGGGGGGGGGTTTTATT‑GGC‑TTACCCCGCTTTCTATGcccg > 2:893242/1‑248 (MQ=255) tATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AAATC‑AAAAATGCAACCGCCTGGATTTTTTCGGCTGAAGTCG‑GCATCAAGGGGAGGGAGCGGTTTTAT‑GGCATTTCCGCGCTTTTAGTGCCTGTTggcgag > 1:693486/1‑250 (MQ=255) ttcgttgggatAACGGCTTGTCGGGGGG‑G‑TTTTTCTCCCCCCTATAGGGCTGAGAAATATCAGAAAAACGCGGGACG‑AAACCGGGGAAAAATTTTTTCCGTAAAAAAAAA‑GGGCATAAACGGTTT‑GGAGGGGGTTTAAAGGGGGAATC‑AACAA‑AATTGTAAAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTgccgag < 2:721585/239‑1 (MQ=255) cTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATT‑AACTC‑AACAATGCAACCGCCTGTTATTTTTTGGCTGGAGACG‑CCGACAAGGAGAGGGGGGGGTTTAATGGGGATTCCCCCGCTTT‑AGTGCCTGTTtccgcggcggat > 2:213662/1‑242 (MQ=255) cTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTTCGGCTGAAGTCG‑CCATCAAGGGGGGGGAGCGGTTTTAT‑GGCATTTCCGCGCTTTCCGTGGCTGGTGCCGAGCCGAtt > 1:873653/1‑250 (MQ=255) ccGGGGG‑GTTATTGCCCACCCATATAGGGCGGGGAAATATCAAAAAAAGGCCGGACAAAACCGGGGTGAAAATTTTTCTGTAAAAAAAAAG‑GGCGC‑AACGGGTTTGGAGGGGTGTTAAAGGGGGG‑ACC‑AACAA‑AAAAGTGAAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCg < 1:910690/250‑1 (MQ=255) cgg‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGAt > 1:545721/1‑250 (MQ=255) ggttATTCCTCACACCTAAAGGGCTGCGAAATATC‑GGAAAAAGGCCGACCCAAACCGGGGCAAAATTTTTAACGTAAAAAAAAA‑GGGCCCAACGGGTTT‑GGAGGGGGTTTTACGGGGGAACC‑ACCAA‑AATAGTGACACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATc < 2:414156/247‑1 (MQ=255) cacaCCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AAATC‑AATAGTGCAACCGCCTGTATTTTTTCGGGTGAAGTCG‑CCCTCAAGGAGAGGGGGCGTTTTAAT‑GGCATTTCCCCGCCTTTTGTGCCCGTTTCCCGGCCGGGTCGCCCTGCCGAAGCGGTTATacaacacacgc > 2:563559/1‑245 (MQ=255) cTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AAATC‑AAAAATGCAACCGCCTGGATTTTTGCGGCTGGAGACG‑CCCACAAGGGGGGGGAGGGGTTTTAT‑TGGAGTCCCGCGCTTTCAGTGCCTGGTGGCGGGCCGATTTGCCCAGCAAAAGAGGTTATTCCACAAAGGCGTACCCCCAAACg > 2:736621/1‑250 (MQ=255) tatCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGGATTTTTTCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGGGTTTTTAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGGTTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCCAGCGTAGCGATg > 2:475533/1‑250 (MQ=255) aacagaaaaaaGGCGGGCGACAACCCGGGATAAATTTTTTAGTTAAAAAAAAAGGGCGC‑AACGGGATG‑GAAAGGGTTTTAACGGGGG‑ACCAAACAA‑AATGGTCAACCCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATg < 2:448120/244‑1 (MQ=255) tCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGAt > 1:274242/1‑247 (MQ=255) cTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTTCGGCTGGAGGGG‑CCCTCAAAGGGAGGGGGCGGTTTTAT‑GGGATTTCCGCGCTTTTAGTGCCTGTTTGCGAGCCGATTCGCCATGCCGAAGCGGTTATCCAAACAACGCTTACCCCCCAGCGTAGCGGTgagg > 2:845147/1‑249 (MQ=255) ggaaaaaaGCCGGACGAAACCTCGGGGTAAATTTTTACGTAAAAAAACAG‑GGCGCAAAGGGCATG‑GAGGGGCGTTTACCGGGGG‑ATC‑AACTC‑AATAGGGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGAc < 1:98910/247‑1 (MQ=255) aaaaGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGGGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCCAGCGTAGCGATGAGAcgcg > 1:188660/1‑249 (MQ=255) aaaGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAAACGCCTGTATTTTTTTGGCTGAAGTCG‑CCCTCAAGGGGAGGGAGGGGTTTTAT‑GGGATTCCCGCGCTTTTAGTGCCTGTTGGCGAGCCGGTTCGCCATGCAGAAGCGGTGGTCCCACAAGAGCCTACCCTCAAGCGTAGCGACGAGGcgtgga > 2:155234/1‑246 (MQ=255) ggACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGcggaccgta > 1:386435/1‑249 (MQ=255) aaaCTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTTCGGCTGGAGTCG‑CCATCCAAGGGAGGGAGCGGTTTAAT‑TGCATTCCCGCGCTTTTAGTGCCTGTTTCCGGGCCGATTTGCCATGCAGAAGCGTTGATTCAACAAGCGCTTACCCTCCAGCGGAGCGATGAGACACGCACCGTACAGCAAg > 2:360482/1‑250 (MQ=255) cGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTTCGGGTGGAGTCG‑CCATCAAGGAGAGTGAGCGTTTTTAT‑GGCATTCCCCCGCTTTCAGTGCCTGTTGCCGAGCCGGTTCGCCATGCAGAAGCGTTGATCCAACAAACGCCTACCCCCAAGCGTCGCGATGGGACGCGGACCGGACAGCCAGATaag > 2:575808/1‑248 (MQ=255) tGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑AAC‑AACTC‑AATAGTGCAAACCCCTGTCTTTTTTCGGGTTAAGGCG‑CCACCAAGGGGAGGGGGCGCTTTTAT‑TGCATTCCCCCCCCTTTAGGTACTGTTGGCGCGCCCGGTCGCCCCGTAGAACGAGTGATCCAACAAGCGCCTCACCTCCCGCGCAGGGAAGAAGCGGGTACCGCACAACCAGGTACGCAACCggggggaaaggg > 2:723149/1‑239 (MQ=255) aaaaaaaAG‑GGCGCTAAGGGTTTA‑GAGGGGGTTTTAGGGGCGA‑ATA‑AACCA‑AATAGTGAAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCa < 1:789019/249‑1 (MQ=255) aaaCAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTTCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGGGCCTGTTGCCGAGCCGATTCGCCCTGCAGAAGCGTTGATCCAACAAGCGCTTACCCCCAAGCGAAGCGATGAGGAGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGAGTCaaa > 2:224265/1‑249 (MQ=255) cAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAAACGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCCGTTGCCGAGCCGCTTCGCCATGCAGAAGCGTTGGTCCCACAAGCGCTTTCCCCCCAACGTAGCGATGCAACGCGTACCGTACCGCCAGATACGCAACCCGTGAAAAGTGTCACAACgg > 2:390102/1‑250 (MQ=255) tAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGGGAAAAGTGTCAAAACGGAGCTGaa > 1:392992/1‑249 (MQ=255) ggCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AAATC‑AATAGTGGAACCGCCTGTATTTTTTCGGCTGGAGTCG‑CCAACAAGGGGGGGGAGAGGTTTAAT‑GGCTTTCCCGCGCTTTCTGTGCCTGTTGCCGCGCCGAATCGCCATGCAGAAGCGGTGATTCCACAAGAGCGTACCCCCAAGAGTAACGCTGAGACGCGGAACGTCACGCAACATAAGCAACAGCTGGACAGTGGCAAAACGGAGCAGAAACaag > 2:329902/1‑248 (MQ=255) gCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCCACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGCTTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATTAGACGCGGACCGTACAGCAAGATACGCAACCGGTGAAAAGGGTCAAAACGGAGCTGAAACAGGc > 1:719941/1‑250 (MQ=255) gCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGGGTCAAAACGGAGCTGAAACAGGc > 1:375803/1‑250 (MQ=255) tt‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCCTGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACt > 1:167869/1‑250 (MQ=255) gAAGGGCTTTTACCGGCGT‑ATA‑ACCTC‑ATTAGTGCAACCGACTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGAAAATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACAAGGAACGTACAGCAAGAGAAGAAACAAGAAAAAAGGGAAAAAACGGAGCAGAAACAGGCACTGt < 1:521003/250‑1 (MQ=255) ttAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGaa > 1:251824/1‑250 (MQ=255) gg‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCtttt > 2:389494/1‑250 (MQ=255) c‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACACGCACTGTTGAGCGGACTCTCTTTTGCCGTACCg > 2:600945/1‑250 (MQ=255) tgggTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGtt < 2:616569/247‑1 (MQ=255) atggTGCAGCCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGtt < 1:213662/247‑1 (MQ=255) aTAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGtt > 1:87347/1‑250 (MQ=255) gCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTg > 1:929349/1‑250 (MQ=255) aaCCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTc > 1:110684/1‑250 (MQ=255) cGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCCTCCCCTCTCTTTCAGTGCCGGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTcg < 2:136110/248‑1 (MQ=255) gCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCgg > 1:689467/1‑250 (MQ=255) cTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCgggg > 1:628339/1‑250 (MQ=255) tttttGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCAc > 1:595179/1‑250 (MQ=255) ttGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGt > 2:173905/1‑250 (MQ=255) | GATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAA‑CCTTCTGCCTCTTTTT‑CCAACGCG‑CCAACTATCGTCTGCGTAACGGCCTGTCCGGCGG‑G‑TATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAA‑GGCGCTAACGGCATT‑GAAGGGCGTTTAACGGCGG‑ATC‑AACTC‑AATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCG‑CCATCAAGGAGAGTGAGCGTTTTAAT‑GGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGT > NZ_CP009273/761923‑762419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |