Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,819,318 | 0 | G | A | 41.5% | 78.0 / 24.6 | 54 | intergenic (‑124/+79) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
Reads supporting (aligned to +/- strand): ref base G (30/1); new base A (0/22); total (30/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.97e-14 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTCCATGTGCGCCAGCATGTTAGCTTTGCGCTGTTCTTCCA > NZ_CP009273/1819076‑1819560 | aTGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAAccg > 1:550766/1‑250 (MQ=255) tGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAAccgc > 1:622056/1‑250 (MQ=255) aaTCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCAt > 2:433399/1‑250 (MQ=255) ctgttgcgcGGGGGGGACCTGCCAATTTCCCCCGTTTCACCCGGCAGTTTCCCCCCACAGATCCACCGAATTTTTACCAATAAAAAAT‑TTTCCCATTCC‑CGCCCCCGGCCCTTTTTTTTTT‑TTTTTAT‑GTTTCAGG‑AACCGGGGG‑TGGTTTTTCGGAACCGGGGTTGATTT‑ACGTTGGTGGTAATCAGGTTTTTTTTC‑AA‑CC‑TGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACt < 2:352882/242‑1 (MQ=255) gTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTg > 2:33632/1‑249 (MQ=255) ggTGGGAACGTGCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGt > 2:624403/1‑250 (MQ=255) ggAACGTGAAAATTCCCCGCGTTCCC‑CCGGCACCATTTCACCAAAATTTCCCCTATA‑TTTACATAATTTAAAGTTCTTCCATCCT‑CCCCCCCGGCCTTTTTTTTTCA‑TTGTTTG‑GGTTCAGGT‑ACCGGGGG‑TTG‑TTTACGGGCACCGGGGTTATTTAAGGTTGGTGGT‑AACCGGGTTTTTTTA‑CC‑ACGTTTTGGAGAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGAc < 2:454018/250‑1 (MQ=255) tGCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGAcc > 1:311670/1‑250 (MQ=255) gCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcg > 1:610948/1‑250 (MQ=255) cgcgctTTTCA‑CCGGAACCTTTCCCCCAAATTTCCACCGACATTTTACGCATAACAAAT‑TATCCCATCCT‑CCCTCCCGGCCGTTTCTTTTCT‑TTTTTAT‑CGTTAAGGTACCGGTGGT‑TGT‑TTATCGGCAACTGGGGTAATTT‑ACGTTAGTGGTGATCAGTTTTTTTTTA‑CA‑AC‑TTTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCt < 1:649677/249‑1 (MQ=255) acGGCAGCATTCCGCCCAAGATCCACCGACATTTTCCGCTTATCAAAT‑TTTTCCATACT‑CGCTCCCGGCTCTTTTTTTTCA‑TTTTTAT‑CTTTCAGGTAACCGGGGA‑TGG‑TTATCGACAACGCGGGTTATTA‑AGTTTAGTGGGGATCGGGTTTTTTTAA‑CA‑AC‑TTTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTgg < 2:299399/249‑1 (MQ=255) gcatcgcGCCACACATTCACCTACTTTTTTCTGATATCAAAG‑TTTTCTCTACG‑C‑CGCCCGGGCTGTTTTTTTGATTTGTGTT‑CTTGCAGGTAGCCGGGTG‑GGG‑TTTCCGGCAACTCGGTTTATTT‑ACGTAAGTGGTGATCGGTTTTTTTTTA‑AA‑AC‑TTTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGaaa < 2:103207/244‑1 (MQ=255) aTTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGACTTTAGTTTTTTGGCTGAAAg > 2:429710/1‑249 (MQ=255) ttcccccACAGATCCCCCGACATTTTACG‑ATAATAAAA‑TTTTCCCTTCTCCGCCCCCGGCCC‑TTTTTTTTT‑TTGTTTTGGGTTAAGGTACCGGGGGA‑GGT‑TTATCGGAACCGGGGGTGATTG‑AGGTTGGTGGTGTTCGGGTTTTTTTAA‑CA‑CT‑TTTTGGAAAAGAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGa < 2:681025/244‑1 (MQ=255) tccccACAGATTCCCCACAATTTTCCGAAAATCAAAG‑TATTCCATCCT‑CGCTCCCGCCCCGTTCTTTTCA‑TTTTTAT‑CGTTCAGTTAACGGGGGA‑TGT‑TTACCGGCACCTGGGGTGATTT‑ACGTTAGTGTTAATCA‑GCTTTTTTTACCA‑AC‑TTTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGatt < 1:154966/246‑1 (MQ=255) aGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcag > 2:141729/1‑248 (MQ=255) ccccgcctttttACGCATATAAAGG‑TTTCCCATCCT‑CGCCCCCGCCCCTTTTTTTTCA‑TTTTTTT‑GTTCCAGGAACCGGGGGA‑TGT‑TTACCGGAAACTGGGTTTTTTT‑ACGTTGGTGGTGTTCAGGTTTTTTTTA‑CA‑AT‑TGTTTGAGAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTg < 1:443242/241‑1 (MQ=255) cACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTATTAAGTTTTTTGGCTGAAAGATTATTCCGCAGTTGc > 2:54907/1‑250 (MQ=255) ttttACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTGAAAGATTATTCAGCAGTTTCAGGCAttt > 1:6745/1‑250 (MQ=255) tttACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTTAGAAGTTGCAGGCAtttt > 1:378412/1‑250 (MQ=255) tCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGGCTTAAGTTTTTTGGGTGAAAGATTATTTAACAGTTTGAGGGATTTTTACTTTTTCCGCTGGGCgg > 2:373226/1‑249 (MQ=255) ctcTCCCGGCCTGTTCTTTTCA‑TTGTTAT‑CGTTGAGGTAACCGTGGA‑TGT‑TTATCGGCACCTGGGGTGATTT‑ACGTTAGTGGTGATCAGTTTTTTTTTA‑CA‑TT‑TGTTGGAGAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAg < 2:550766/248‑1 (MQ=255) cccccGGCCCTTTTTTTTAT‑TTTTTTT‑CGTTCAGTAACCCGGGGA‑TGT‑TATTCGGCAACTGGGGTTATTT‑ACTTAGGTGGTGATCAGGTTTTTTTTA‑CA‑CT‑TGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGAc < 1:525682/248‑1 (MQ=255) cTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGGATTTTACCTTTTGCCGGTGGACGTTCTGTCAg > 2:165204/1‑248 (MQ=255) ccccGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGG‑TGG‑TTATCGGCAACTGGGGTGATTT‑ACGTTAGTGGTGATCAGTTTTTTTTTA‑CA‑CC‑TGTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACg < 1:433399/249‑1 (MQ=255) ccGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTTAGCAGTTGCAGGCATTTTTACTTTTTCCCCCGGCCGGTTTGTCAGTCGCt > 2:454125/1‑250 (MQ=255) ggccttttCTTTTTA‑TTGTTTT‑CTTTCAGGTACCGGGGGT‑TGG‑TTATCGGCAACTGGGGTGATTT‑ACGTGAGGGGTGATCAGTTTTTTTTTA‑CA‑AC‑TGTTTGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACCGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTtc < 2:168863/244‑1 (MQ=255) cGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTATGCTTTTTGGCTGAAAGAGTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTTGTCGTTCTGCTAGACGCTTCTCa > 2:387784/1‑249 (MQ=255) ttCA‑TTTTTAT‑CGTTCAGGTACCCGTGGT‑TGG‑TTATCGGCACCTGGGGTGTTTT‑ACGTTGGTGGTGATCAGGTTTTTTTTA‑CA‑AC‑TGTTTAAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAg < 1:140278/249‑1 (MQ=255) ttatttGTTTT‑GGTTCAGATCACTGTGGA‑GGT‑TTTTCGGAACCTGGGGTATTTT‑ACGTTAGTGGTAATCAGGTTTTTTTTA‑CA‑AC‑TGTTTGAGAAAAGAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAAtt < 1:25735/243‑1 (MQ=255) tAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTTAAAATTAGCATTAAAtt > 1:216946/1‑250 (MQ=255) taccgtttgggTAACCGGTGA‑TGT‑TTTTCGGAAACTCGTTTGTTTA‑ACGTGAGTGGTTATCAGTTTTTTTTAA‑CA‑TC‑TTTTAGAAAAGAGAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAAt < 1:73669/240‑1 (MQ=255) gttggTTCAGTTAACGGTGGA‑TGT‑TTATCGGCAACTGGGTTGATTT‑ACGTTAGTGTTAACAAGGTTTTTTTTA‑CA‑AT‑TGTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAAt < 1:559495/245‑1 (MQ=255) atcgttatgataCCGTGGGTTGG‑TTATCGGCAGTTCGGTTGATTT‑TTGTTGGGGTTGATCAGG‑TTTTTTTA‑CACAT‑TGTTAGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAAtt < 2:610948/238‑1 (MQ=255) cGTTCAGGTACCGGTGGA‑TGT‑TTACCGGAACCTGGGGTGTTTT‑AGGTTGGTGGGAATGAGTTTTTTTTTA‑CA‑AT‑TTTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGc < 1:19510/249‑1 (MQ=255) ttCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGGCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGACGGCATTTTACCTTTTGCCGCTGGACGTTTTTTCAGGCGCTTCTCAAAATTAACCTTaaaattgttt > 2:438277/1‑243 (MQ=255) ccGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTcc > 1:140417/1‑250 (MQ=255) ttATCGGAAACTGGGGTGATTT‑GCGTTAGTGGTGATCAGGTTTTTTTTA‑CA‑AC‑TGTTTAAGAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGa < 1:9296/250‑1 (MQ=255) cAACGCGGTTGATTT‑AGTTTAGTGGTGAGCCTGTTTTTTTTA‑CA‑CC‑TGTAGGAAAAGAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTa < 2:528262/250‑1 (MQ=255) aaCTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTTAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGGCGTTCTGTCAGACGCTTCTCAAAATTAGCATTTAATTGCTTTTTCTTTTTCCGCGTCAGGGtggtttg > 2:594656/1‑244 (MQ=255) gggggTGATTT‑ACTTTAGTGGTGATCAGTTTTTTTTTA‑CA‑AC‑TGTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAAtt < 1:33632/248‑1 (MQ=255) gggTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTTTGTTCCGGCGTCAGGATGTTGTAAAtttt > 1:351776/1‑250 (MQ=255) ttAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTc > 1:520494/1‑250 (MQ=255) gtgATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTTCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAATGTTTTTTGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGAAGCTTATCTAAATTTGCACTAAATTTCTTTTTTTGTTCCGGCGTCCGGGTGTTGTAAATTTTTTTCTTGGTTTTCAtgtg > 2:354621/1‑250 (MQ=255) ttttttttA‑AA‑TC‑TGTTTGAAAAGAAAAAATAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTCCATGTGCGCCAGCAt < 2:612852/249‑1 (MQ=255) cTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGGTTCCATGTGCGCCAGCAt > 1:679331/1‑250 (MQ=255) tttttA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGGTGTTGTAAATTTTGTTCTGGGTTTCCATGTGCGCCAGCCTGtt > 1:5228/1‑250 (MQ=255) tttA‑CA‑CC‑TTTTAGAAAAAAAAAAAAAACACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTCCATGTGCGCCAGCATGTTa < 2:75580/249‑1 (MQ=255) a‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTCCATGTGCGCCAGCATGTTAGCtt > 1:638617/1‑250 (MQ=255) aC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTCCATGTGCGCCAGCATGTTAGCTTTgc > 2:9118/1‑250 (MQ=255) tttGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTTCATGTGCGCCAGCATGTTAGCTTTGCGCTg > 1:341142/1‑250 (MQ=255) tttGAGAAGAAAAAAGAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTCCATGTGCGCCAGCATGTTAGCTTTGCGCTg < 1:13451/250‑1 (MQ=255) tGAGAAGAGAAAAGCAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTTAGATTTTTGGCTGGAAGATTATTCCGCACTTTTAGGCATTTTTCCTTTTGTCCCTGGGCGTTCTGTTAGACGCTTCTCCAAATTAGCATTCAATTGCTTTTTTTGTTCCGGGGGCCGGATGTTGTTAATTTTGTTTTGGGGTTTCATGTGTGCCCGCATGTTAGCTTTGCGGTGtt > 2:56613/1‑250 (MQ=255) gagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGAAGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTTGGTTTCCATGTGTGCCAGCATGGTAGCTTTTCGCTGttttttcc > 2:604925/1‑247 (MQ=255) | ATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCA‑CCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATCAAAG‑TATTCCATACT‑CGCTCCCGGCCCGTTCTTTTCA‑TTGTTAT‑CGTTCAGGTAACCGTGGA‑TGG‑TTATCGGCAACTCGGGTGATTT‑ACGTTAGTGGTGATCAGGCTTTTTTTA‑CA‑AC‑TGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATTAGCATTAAATTGCTTTTTCTGTTCCGGCGTCAGGATGTTGTAAATTTTGTTCTGGGTTTCCATGTGCGCCAGCATGTTAGCTTTGCGCTGTTCTTCCA > NZ_CP009273/1819076‑1819560 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |