| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,819,597 | 0 | A | C | 34.7% | 79.5 / 14.3 | 50 | N136T (AAC→ACC) | srlA | PTS glucitol/sorbitol transporter subunit IIC |
| Reads supporting (aligned to +/- strand): ref base A (21/11); new base C (0/17); total (21/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.55e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AACGTTTTGCTCAACGTTGCGCCGGTAACCCTGTTTCCCGTTACCTACTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATA > NZ_CP009273/2819351‑2819838 | aaCGTTTTGCTCAACGTTGCGCCGGTAACCCTGTTTCCCGTTACCTACTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCt > 2:116850/1‑250 (MQ=255) tttGCTCAACGTTGCGCCGGTAACCCTGTTTCCCGTTACCTACTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCAc > 2:43522/1‑250 (MQ=255) gCTCAACGTTGCGCCGGTAACCCTGTTTCCCGTTACCTACTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACtt < 2:476824/249‑1 (MQ=255) tCAACGTTGCGCCGGTAACCCTGTTTCCCGTTACCTACTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGc > 2:431681/1‑250 (MQ=255) cgcCGGTACCCCTGTTTCCCGTTACCTACTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGACCCTGCCACTTGGCCCACTGGc < 2:147684/249‑1 (MQ=255) gttttCCCGTTACCACCTTTTACCGT‑CATTGGGGACGTTTGTCTTTTGCAATCCGATGCCCGTAAGCCTGGTTCGCTTTATGCCGGAAAAATACAAACCC‑AGTTACTACGCGGCTGCCTCTTATAGCTGCCACTCAATGAATGGCCGCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCGAGC‑GGTCTGACAACGCTGAGCCTGCCACTTGGCCCACGGGCGGTGAGTCATctg < 2:327658/248‑1 (MQ=255) ccGTTACCTACTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑tggtt < 1:67384/250‑1 (MQ=255) cTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATACGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTtggtctggtc < 1:242804/249‑1 (MQ=255) t‑GGCACTGTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGAAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATttcttc < 2:339342/247‑1 (MQ=255) tGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGc > 1:289039/1‑250 (MQ=255) ggggctcTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAAGGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTTTTTGTTTATCTTGGCTTTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGCCCGATCGGACCACCGCCATTTTTGAGaaa < 1:100673/244‑1 (MQ=255) ggTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAAATTCTTCCGCGG‑CTGGGTGACCGATCTTACCACCGCCATTTTTGAGaaa > 1:309304/1‑249 (MQ=255) tgcgtttAAGCCAGAAAAATAAAACCCCAAGTTCCTCCCCGGCGGCCTTTTATCGCTCCCACTCAATAAATGGCCTCTCCCCCC‑AATCCACCCCTGGCAAA‑CTTTTTTTTTTTCTTGCCTTGGCCGCG‑GGTCTGACACCGCGAACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGaaaaa < 2:15235/246‑1 (MQ=255) gCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGGGACCGATCTGACCACCGCCATTTTTGAGAAAAAGAt > 1:632419/1‑250 (MQ=255) tttATGCCGGAAAAGGACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTAACTCCTTGGTGGGACTGATAACAAATTT‑TTCCGCGGCCTGGGT‑ACACATATGCACACCCCCATTTTTGATaaaaaaaagg > 2:404487/1‑245 (MQ=255) tATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGGTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTTAGAAAAAGATggg > 1:450557/1‑249 (MQ=255) tGCCGAAAAAGTACAAACCC‑AGCTACTCCGCGGCGGCCTCTTATAGCGGCCACTCAATGAATGGCCTTTCCCCCC‑ATATCACCCCTGGCGAA‑CTGTTTTTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCAt < 1:510919/250‑1 (MQ=255) ccGGAAAA‑TACAACCCCAATCTCCTACGGGGGGCCCTTTTAAAGCTCCCCCTCAAGGATTGGCCTCTCCCCCC‑ATACCACCCCTGCCAAC‑TTTTTTGTTTTTTTTGTATTTCCCGGC‑GTTCTGAAAACGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGTTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCAtt < 2:540245/249‑1 (MQ=255) aggaCAACCCC‑AGCTACTCCGGGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTTTCCCCCC‑ATATCAACCCTGGCGAA‑CTTTTTGTTTATCTTGGCTTTGCCGGC‑GGTCTGACAACGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGa < 1:564785/247‑1 (MQ=255) agcaCAACCCC‑AGCTACTCCGCGGCGGCCTCTTAGAGCGGCCCCTCAATGAATGGCCTCTCCCCCC‑ATACCACCCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGa < 1:533076/247‑1 (MQ=255) cAACCCC‑AGCTACTCCGCGGCGCCCTCTTATAGCTGCCACTCAATGAATGCCCTCTTCCCCC‑ATATCAACCCGGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACa < 1:31585/249‑1 (MQ=255) cAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACa > 1:375392/1‑249 (MQ=255) c‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGGCTGGGCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAAATGGGCATTCAACTTGAACAAAAAGtt > 1:95332/1‑250 (MQ=255) acctcctacGCGGCCGCCTCTTATAGCTGCCACTAAATGAA‑GGCCCCTTCCCCCAATACCACCCCGGGCGAC‑CTGTTTGTTTTTCTTGGCATTGCCGGC‑GGTCTAACAACGCTGAACCTGCCCCTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTc < 2:291202/245‑1 (MQ=255) aGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGGTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCCCCGCCCTTTTTTAGAAAAAGAAGGGGATTCAACTTGaaaaaaaaaat > 2:346885/1‑246 (MQ=255) aGCTACTACGCGCCGGCTTCTTATAGCTGCCACTCAATAAATGGCCTCTTCCCCC‑ATATCACCCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GTTCTGACACCGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑GGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTc < 1:39698/250‑1 (MQ=255) ggcggcCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGATAGTTATTTGC‑TGGGTGGTCTGGGCACCAATTTCTTCCGCGG‑CTGGGGGACCGGTCTGACCCCCGCCATTTTTGAGAAAAAGATGGGCCTTCAAATTGAACAAAAAGTTCAACTAGCAggg > 2:376485/1‑249 (MQ=255) ctctTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑CGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCCCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAAATTACCCGGCAGGAGCcaca > 1:68255/1‑250 (MQ=255) ttATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGGGCAAcatca > 1:295850/1‑250 (MQ=255) ataGCCGCCACTAATTGATGGCCCTCTCCCCCC‑AT‑CCCACCCCGGCAAATTTTTTTTTTTATTTGGGCATTGCCCGC‑GGTCTGACACCGCTGACCCTCCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTAACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAAcatc < 2:4802/247‑1 (MQ=255) taccggCCACGCAATGAATGGCCTCTTCCCCC‑ATATCACCCCTGGCGAT‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTAAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGa < 1:644794/245‑1 (MQ=255) gCTGCCACTCAATGAATGGCCTTTCCCCCC‑ATACCAACCCTGGCGAA‑CTGTTTTTTTATCTGGGCATTGCCAGC‑GGTCTGACAACGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACg < 1:157799/250‑1 (MQ=255) gCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGGTGGTCTGGGCACCAATTTTTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACg > 1:354983/1‑250 (MQ=255) aCTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATAtt < 1:116850/250‑1 (MQ=255) aatgaatgGCCTCTTCCCCC‑ATATCACCCCTGGCGAA‑TTGTTTTTTTATCTGGGAGTGGCCGGC‑GGTCGGACAACGCGGACCCTGCCTCTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCg < 2:590357/248‑1 (MQ=255) ggCCTTTTCCCCC‑ATATCACCCCTGGCGAA‑CTGTTTGTTTTTCTGGGAATTCCCAGC‑GGTCTGACACCGCTGAACCTGCCACTTGGCCCACTGGGGGTGAGTTTTCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGa‑aaa < 1:321959/250‑1 (MQ=255) ctTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGGTGGTCTGGTCCCCAATTTTTTCCGCGG‑CTGGGGGACCGATCTGTCCACCGCCATTTTTTGGAAAAAAATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCGACATCATGACGCATATTCGGAAAGa‑aaacagaa > 2:43330/1‑245 (MQ=255) cccc‑ATATCACCCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACACCGCGAACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACggg < 1:276891/250‑1 (MQ=255) ccc‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTTC‑TGGGTGGGCTGGTCCCCAATTTCTTCCGCGG‑CTGGGGGAACGATCCGCACCCCGCCCTTTTTGAGAAAACGAAGGGCATTCAACTTTAACAAAAAATTCACCTGGCAGGAGCAACATCATGACGCTTATTCGGATTGG‑AAAAGGAACgggg > 2:529961/1‑249 (MQ=255) atatCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGc > 1:38977/1‑250 (MQ=255) ccccGGGCGAC‑TTTTTTGTTTA‑CTTGGCCTTGCCCGCGGGCCTAACACCCCGGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGggc < 2:283799/249‑1 (MQ=255) ggCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGccc > 1:511153/1‑250 (MQ=255) cGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGGGGTTTATGC‑TGGTTGGGCTGGGCACCAATTTCTTCCCCGG‑CCGGGGGGCCGATCTGACCACCGCCACTTTTGAGAAAAAAAAGGGCGATCAACTTGAACAAAAAATTTACCTGGCAGGAGCAAAATCCAGACGCATATATGGGACGACAAAAGGAAAGGGAGGC‑GGGGCGGGCCgg > 2:147616/1‑249 (MQ=255) gtttATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGGGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAAAGGGGGGCTGGGGCGGCCCGCTTGGGCTGa > 2:233107/1‑249 (MQ=255) aTTGCCAGC‑GTTCTGACACCGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGGCCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCggg < 1:43522/250‑1 (MQ=255) tggcctcgggTCTGACACCGCTTACCCTGCCACTTGGCCCACGGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGCCGCCAATTTCTTCCGCGG‑CTGGGTGACCATTCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGa < 1:492475/242‑1 (MQ=255) tgcccgggggTCTAACAAGGGTGAACCTGCCACTGGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTCCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCggg < 2:562246/241‑1 (MQ=255) aCAACGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTCCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGt < 1:431681/247‑1 (MQ=255) cAACGCTGACCCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCtat < 1:336949/250‑1 (MQ=255) aaCTCTGAACCCGCCACTTGGCCCCCTGGCGGTGAGTTATCTGC‑TGTTTGGTCTGTTCCCCAATTTCTTCCGCGG‑CGGGGTAACCGATCGGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCtata < 2:354983/250‑1 (MQ=255) | AACGTTTTGCTCAACGTTGCGCCGGTAACCCTGTTTCCCGTTACCTACTGTTACCGTGCATT‑GGCACGTTTGTCTTTTGCAATCCGATGACCCTAAGCCTGGGTCGCTTTATGCCGGAAAAGTACAAACCC‑AGCTACTACGCGGCGGCCTCTTATAGCTGCCACTCAATGAATGGCCTCTTCCCCC‑ATATCAACCCTGGCGAA‑CTGTTTGTTTATCTTGGCATTGCCAGC‑GGTCTGACAACGCTGAACCTGCCACTTGGCCCACTGGCGGTGAGTTATCTGC‑TGGTTGGTCTGGTCACCAATTTCTTCCGCGG‑CTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGA‑AAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATA > NZ_CP009273/2819351‑2819838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |