Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092734,526,0140AT36.2% 61.8 / 29.1 48intergenic (+166/+102)yjhR/BW25113_RS26295helicase YjhR/HNH endonuclease
Reads supporting (aligned to +/- strand):  ref base A (2/28);  new base T (17/0);  total (19/29)
Fisher's exact test for biased strand distribution p-value = 6.24e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GATACGTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGC  >  NZ_CP009273/4525765‑4526259
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                     
gatacgTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTa                                                                                                                                                                                                                                                       <  1:110420/250‑1 (MQ=255)
gatacgTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTa                                                                                                                                                                                                                                                       <  1:350738/250‑1 (MQ=255)
   acgTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGTGGCTTTTAggt                                                                                                                                                                                                                                                    >  2:571571/1‑249 (MQ=255)
    cgTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGaa                                                                                                                                                                                                                                                   <  2:236995/250‑1 (MQ=255)
     gTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAAt                                                                                                                                                                                                                                                  >  1:69933/1‑250 (MQ=255)
          tGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATgaaa                                                                                                                                                                                                                                              <  1:285401/249‑1 (MQ=255)
          tGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATgaa                                                                                                                                                                                                                                               <  2:402640/248‑1 (MQ=255)
                 ccGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgc                                                                                                                                                                                                                                      <  1:275955/250‑1 (MQ=255)
                  cGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGGTTGAAAGAAAATgc                                                                                                                                                                                                                                      >  1:535261/1‑249 (MQ=255)
                      gtgAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaagc                                                                                                                                                                                                                                  <  1:420377/249‑1 (MQ=255)
                       tgAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaagcaa                                                                                                                                                                                                                                <  2:69933/250‑1 (MQ=255)
                         aaGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCGAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCaat                                                                                                                                                                                                                               <  2:389601/249‑1 (MQ=255)
                             cGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataatat                                                                                                                                                                                                                          <  1:6604/250‑1 (MQ=255)
                              gTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAGAAAAAGCAAGAAataatat                                                                                                                                                                                                                          >  1:318016/1‑249 (MQ=255)
                                  aaaaTGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGAATGTAAGAAAAATAAAGAaataaaataaaa                                                                                                                                                                                                                      >  1:629862/1‑247 (MQ=255)
                                     aTGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGAATGAAAGAAAAAGCAAGAAATAATATaataattg                                                                                                                                                                                                                  >  1:153898/1‑248 (MQ=255)
                                          aTAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTaa                                                                                                                                                                                                             <  2:6365/250‑1 (MQ=255)
                                                 cAATATATGGGAGTCTGGAGCAACGTCAGCTTTAATTGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGTGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTTCGAGTCGCCTTTCCTGATTATAATTCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGTCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCttt                                                                                                                                                                                                      <  2:658471/250‑1 (MQ=255)
                                                   atatatGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGAGGCTTTTTGGATTTTAAAAAAATGCAAGAAAAAATTATATAAAAGTCTAATttttttt                                                                                                                                                                                                     >  2:544218/1‑248 (MQ=255)
                                                       atGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATTGAAAAAAAAGAAAGCAATAATATAATAATAGGCTAATttttttttaca                                                                                                                                                                                                 >  2:648947/1‑244 (MQ=255)
                                                           tAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATGTAAAAAAATGCAAGCAAAAATATAATAAAGGCCTAATTTTTTTGTAaatcat                                                                                                                                                                                             >  1:312370/1‑249 (MQ=255)
                                                              tCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAg                                                                                                                                                                                         <  1:213911/250‑1 (MQ=255)
                                                               cTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGGTGATATAAAAAACAAGCACAAATATAATAAAGGTTTTATTTTTTTTTACATCATTata                                                                                                                                                                                         >  2:385819/1‑247 (MQ=255)
                                                                               gttAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAATCATATCATCATCGTCTa                                                                                                                                                                        <  2:491353/249‑1 (MQ=255)
                                                                                     tgtgATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGcc                                                                                                                                                                  <  1:74118/250‑1 (MQ=255)
                                                                                                  tCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAAAAAAATAAAGCAATAATATAATAATAGGCTAATTTTTTTTAAAAACATTAAACATATCATAATCGTCTTTTTTTCAGCATCCGTCGAc                                                                                                                                                     >  1:90712/1‑250 (MQ=255)
                                                                                                        tACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATaa                                                                                                                                               <  2:349147/250‑1 (MQ=255)
                                                                                                                   taAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGAATGAAAGAAAAAGCAAGCAAAAATATAATAATAGCCTAATTTTTTTTTAAAACATTAAAAATATCATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATCTCCAGAACg                                                                                                                                    >  1:167518/1‑250 (MQ=255)
                                                                                                                    aaaGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAAAAAAAAAAAACAATAAAAAAAAAAAGGACTAATTTTTTTTAACATAATTAAACATATTATCATACTCTATTTTCCAGAATCCGTAGACTTATAATAGCCAGAAccg                                                                                                                                   >  2:217882/1‑248 (MQ=255)
                                                                                                                       gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGAAAAAGCAAGCAATAATATAAAAATGGGCTAATTTTTTTTAACATAATTAAACATATCATCATCGTCTATTTTTCAGAATCCGTCGACTTATAATCTCCCGAACGGCa                                                                                                                                 >  1:308526/1‑249 (MQ=255)
                                                                                                                       gggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCat                                                                                                                                <  1:355636/250‑1 (MQ=255)
                                                                                                                                   ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGt                                                                                                                     <  2:14757/249‑1 (MQ=255)
                                                                                                                                            aGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAAc                                                                                                            <  2:639899/249‑1 (MQ=255)
                                                                                                                                            aGGCGACTGTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAAc                                                                                                            <  2:180201/249‑1 (MQ=255)
                                                                                                                                                   tttCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGGATTAAAAAAAATGCAAGGAAAAATATAATAAAGTGCTAATTTTTTTTAACATCATTAAGAATATCATAATCGTCTATTTTGCAGAATCCGTCGACATTTAATTGCCACGACGGCATATCATGACGGGGCTGCGAGAGCTGTGGc                                                                                                    >  2:522203/1‑250 (MQ=255)
                                                                                                                                                           ttATTGCGAGTCGCGTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAAc                                                                                             <  2:311874/249‑1 (MQ=255)
                                                                                                                                                                gCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTcc                                                                                        <  2:457206/249‑1 (MQ=255)
                                                                                                                                                                        ccTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGGATGAAAGAAAATACAAGCAAAAAAATAATAATTGCCCAATTTTTTTTAAAAACATTAAAAATATTATCATCGTCTTTTTTTCAGAATCCCTCGGCCTATAAAACCCAGAAAGGCATATCAAGACGGGTCTTCGGACGCTTTGGCCCCAAAAGATCCAGTCAAcag                                                                               >  1:636890/1‑248 (MQ=255)
                                                                                                                                                                              cTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGGATGAAAGAAAAAGCAAACAATAAAATAATAATTGGCTAATTTCTTTTAAAATCATTAAGCATATCATCATCGTCTATTTTTCAGAATCCGTCGACTTATAATTTCCAGAACGGCATATCAGGACGGGGCTGCGAACGCTGTGGCCCAAAAAGATCCAGTAAAATATGTTGa                                                                         >  1:55883/1‑250 (MQ=255)
                                                                                                                                                                                     taAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGt                                                                  <  1:548180/250‑1 (MQ=255)
                                                                                                                                                                                     taAATCTTATTATTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGt                                                                  <  1:648947/250‑1 (MQ=255)
                                                                                                                                                                                            tATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTGGAATGAAAGAAAATGCAAACAATAATATAATAAAAGCCTAATTTCTTTTAACATCATTAAACATATCATCAACGTCTATTTTCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCCAAAAGATCCAGTAAAATGTGTAGATGTTCGTTGATTTc                                                           >  1:293193/1‑250 (MQ=255)
                                                                                                                                                                                                     ccTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCACCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTTTAGATGTTCGTAGATTTCCGAGCCATa                                                  <  2:243223/250‑1 (MQ=255)
                                                                                                                                                                                                         aTCTTTTTCCTTTGCATAATGCGCCTGTGATTAATGGCGGGTGCTTTTAGAAATAAAAGAAAATGCAAAAAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCAAGAATCCGTCGACTTATAACCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAACCGTTCCAGAAAACGGTGTAGATGTTGGTAGATTTCCGAGCCATAATCg                                              <  2:538308/250‑1 (MQ=255)
                                                                                                                                                                                                            aTTTTCCTTTGCATAATGCGCCTGGGAATAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCATAATTTCTTTGAAAATCATAAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGAATATCAGGACGGTGCTGCGAACGCTGGGGCCCAAACCGTTCCAGAAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGaa                                            <  2:535261/249‑1 (MQ=255)
                                                                                                                                                                                                                 ccttgtcATAATGCGTCTGGGTTTATGGGCGGGGTCTTTAAGAAATGAAAAAAAATGCAAGAAATAATAAAATAATGGCCTAATTTCTTTAAACATCATTAAGCATATCATAATCTTCTATTGGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGTTGCGACCGCTGTGACCCAAAACGTCCCAGTAAACTGTGTAGATGTTCGTAAATTTCCGAGCCATAATCGAAAAGgcg                                      <  2:629862/244‑1 (MQ=255)
                                                                                                                                                                                                                            tgagcCGGGGATTAAGGGGGGGTTCTTTTGGAAAGAAAAAAAAATGAAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCACCGTCTATTTGCCAGAATCCGTCGCCTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCAAACGCTGTGGCCCAAAACGTCCAAGTAAACTGTGTAGATGTTCGTAAATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTAt                           <  2:250106/247‑1 (MQ=255)
                                                                                                                                                                                                                                ccTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTAAAATCGCCAGAACGGCATATCAGGACGGTGCGGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAg                       <  1:174561/250‑1 (MQ=255)
                                                                                                                                                                                                                                             gggggTTCTTTAAGGAATAAAAAAAAATGCAAGCAATAAAATAATAATGGCCTATTTTCTTGGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGATTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGAAAACTGTGTAGATGTTCGTAGATTCCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAAt          <  2:95963/248‑1 (MQ=255)
                                                                                                                                                                                                                                                      tttAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGc  >  1:137282/1‑249 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                     
GATACGTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGC  >  NZ_CP009273/4525765‑4526259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑