mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 3,793,677 | (T)7→6 | coding (649/699 nt) | rfaY ← | lipopolysaccharide core heptose(II) kinase RfaY |
| MC JC | 3,809,219 | Δ82 bp | pseudogene (610‑691/716 nt) | rph ← | ribonuclease PH |
| RA | 4,026,743 | T→A | L80Q (CTG→CAG) | trkH → | Trk system potassium transporter TrkH |
| RA | 4,323,055 | T→G | Q15P (CAA→CCA) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 387287–388428 | 397243 | 8816–9957 | 80 [78] | [0] 174 | [BW25113_RS01920]–[phoA] | [BW25113_RS01920],BW25113_RS01920,BW25113_RS01930,iprA,ampH,sbmA,yaiW,yaiY,yaiZ,ddlA,BW25113_RS25915,iraP,[phoA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 88 (0.550) | 88 (0.550) | 77/496 | 2.4 | 49.4% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 92 (0.580) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 388422 | NA (NA) | 168 (1.060) | 139/494 | 0.1 | 100% | intergenic (‑65/‑7) | BW25113_RS01920/BW25113_RS01930 | IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein |
| ? | NZ_CP009273 | 397244 = | 0 (0.000) | coding (42/1416 nt) | phoA | alkaline phosphatase | |||||
| * | ? | NZ_CP009273 | 2507755 = | NA (NA) | 150 (0.950) | 128/492 | 0.2 | 96.8% | intergenic (+32/‑55) | nupC/BW25113_RS12490 | nucleoside permease NupC/IS4‑like element IS421 family transposase |
| ? | NZ_CP009273 | 2529669 = | 5 (0.030) | coding (477/510 nt) | crr | PTS glucose transporter subunit IIA | |||||
| * | ? | NZ_CP009273 | = 2509092 | NA (NA) | 165 (1.050) | 142/490 | 0.1 | 98.8% | intergenic (+170/+30) | BW25113_RS12490/pdeA | IS4‑like element IS421 family transposase/sensor domain‑containing phosphodiesterase |
| ? | NZ_CP009273 | = 2529679 | 2 (0.010) | coding (487/510 nt) | crr | PTS glucose transporter subunit IIA | |||||